Guide to the Human Genome
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Name: C9orf9 Sequence: fasta or formatted (168aa) NCBI GI: 33285006
Description:

Rsb-66 protein

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          7           2
 C cysteine            3.6          6           1
 D aspartate           4.2          7           1
 E glutamate           7.1         12           1
 F phenylalanine       2.4          4           1
 G glycine             3.0          5           2
 H histidine           6.0         10           1
 I isoleucine          4.8          8           1
 K lysine              6.5         11           1
 L leucine            12.5         21           2
 M methionine          2.4          4           1
 N asparagine          5.4          9           2
 P proline             3.0          5           1
 Q glutamine           6.0         10           4
 R arginine            4.8          8           2
 S serine              9.5         16           2
 T threonine           4.8          8           2
 V valine              6.5         11           2
 W tryptophan          0.6          1           1
 Y tyrosine            3.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Rsb-66 protein 
CTPS2                 0.016   cytidine triphosphate synthase II 
CTPS2                 0.016   cytidine triphosphate synthase II 
CTPS2                 0.016   cytidine triphosphate synthase II 
NUP155                0.013   nucleoporin 155kDa isoform 2 
NUP155                0.013   nucleoporin 155kDa isoform 1 
PDE11A                0.009   phosphodiesterase 11A isoform 3 
PDE11A                0.009   phosphodiesterase 11A isoform 4 
LRRFIP2               0.009   leucine rich repeat (in FLII) interacting protein 2...
IFT57                 0.009   estrogen-related receptor beta like 1 
R3HDM1                0.009   R3H domain containing 1 
PRDM5                 0.009   PR domain containing 5 
SYCP2L                0.009   synaptonemal complex protein 2-like 
NDE1                  0.006   nuclear distribution gene E homolog 1 
NDE1                  0.006   nuclear distribution gene E homolog 1 
LRRFIP2               0.006   leucine rich repeat (in FLII) interacting protein 2 i...
SYNE1                 0.006   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.006   spectrin repeat containing, nuclear envelope 1 isof...
CCNH                  0.006   cyclin H 
SMC5                  0.006   SMC5 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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