Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PDE11A Sequence: fasta or formatted (683aa) NCBI GI: 116536087
Description:

phosphodiesterase 11A isoform 3

Referenced in:

Adrenals
Cyclic Nucleotides

Other entries for this name:
alt prot [489aa] phosphodiesterase 11A isoform 1
alt prot [933aa] phosphodiesterase 11A isoform 4
alt prot [575aa] phosphodiesterase 11A isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         55           2
 C cysteine            2.0         14           1
 D aspartate           6.4         44           2
 E glutamate           6.9         47           2
 F phenylalanine       5.0         34           2
 G glycine             3.2         22           1
 H histidine           2.5         17           3
 I isoleucine          6.1         42           2
 K lysine              6.9         47           2
 L leucine            10.8         74           3
 M methionine          3.2         22           1
 N asparagine          4.2         29           2
 P proline             2.6         18           1
 Q glutamine           4.7         32           1
 R arginine            5.3         36           2
 S serine              7.6         52           3
 T threonine           4.5         31           2
 V valine              6.1         42           2
 W tryptophan          1.5         10           1
 Y tyrosine            2.2         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphodiesterase 11A isoform 3 
PDE11A                0.923   phosphodiesterase 11A isoform 4 
PDE11A                0.842   phosphodiesterase 11A isoform 2 
PDE11A                0.718   phosphodiesterase 11A isoform 1 
PDE5A                 0.370   phosphodiesterase 5A isoform 1 
PDE5A                 0.370   phosphodiesterase 5A isoform 3 
PDE5A                 0.370   phosphodiesterase 5A isoform 2 
PDE6A                 0.273   phosphodiesterase 6A 
PDE6C                 0.272   phosphodiesterase 6C 
PDE6B                 0.267   phosphodiesterase 6B isoform 2 
PDE6B                 0.267   phosphodiesterase 6B isoform 1 
PDE10A                0.252   phosphodiesterase 10A isoform 2 
PDE10A                0.252   phosphodiesterase 10A isoform 1 
PDE2A                 0.243   phosphodiesterase 2A isoform 3 
PDE2A                 0.243   phosphodiesterase 2A isoform 2 
PDE2A                 0.243   phosphodiesterase 2A isoform 1 
PDE6B                 0.226   phosphodiesterase 6B isoform 3 
PDE9A                 0.101   phosphodiesterase 9A isoform g 
PDE9A                 0.101   phosphodiesterase 9A isoform g 
PDE9A                 0.101   phosphodiesterase 9A isoform o 
PDE9A                 0.101   phosphodiesterase 9A isoform n 
PDE9A                 0.101   phosphodiesterase 9A isoform m 
PDE9A                 0.101   phosphodiesterase 9A isoform j 
PDE9A                 0.101   phosphodiesterase 9A isoform g 
PDE9A                 0.101   phosphodiesterase 9A isoform l 
PDE9A                 0.101   phosphodiesterase 9A isoform k 
PDE9A                 0.101   phosphodiesterase 9A isoform j 
PDE9A                 0.101   phosphodiesterase 9A isoform i 
PDE9A                 0.101   phosphodiesterase 9A isoform h 
PDE9A                 0.101   phosphodiesterase 9A isoform g 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press