Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 123317861
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|123317861 germ cell associated 1 isoform 2 [Homo sapiens]
(326 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|123317861 germ cell associated 1 isoform 2 [Homo sapiens] 674 0.0
gi|123317881 germ cell associated 1 isoform 4 [Homo sapiens] 655 0.0
gi|157951718 GSG1-like isoform 1 [Homo sapiens] 256 1e-68
gi|123317847 germ cell associated 1 isoform 1 [Homo sapiens] 254 6e-68
gi|123317872 germ cell associated 1 isoform 3 [Homo sapiens] 236 2e-62
gi|169211272 PREDICTED: germ cell-specific gene 1-like protein 2... 187 1e-47
gi|169211660 PREDICTED: germ cell-specific gene 1-like protein 2... 187 1e-47
gi|169210878 PREDICTED: germ cell-specific gene 1-like protein 2... 187 1e-47
gi|21389571 GSG1-like isoform 2 [Homo sapiens] 143 2e-34
gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Ho... 39 0.008
gi|124256496 heat shock 70kDa protein 1-like [Homo sapiens] 37 0.024
gi|24234686 heat shock 70kDa protein 8 isoform 2 [Homo sapiens] 35 0.091
gi|5729877 heat shock 70kDa protein 8 isoform 1 [Homo sapiens] 35 0.091
gi|5729756 voltage-dependent calcium channel gamma-3 subunit [Ho... 34 0.15
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 34 0.20
gi|167466173 heat shock 70kDa protein 1B [Homo sapiens] 33 0.45
gi|194248072 heat shock 70kDa protein 1A [Homo sapiens] 33 0.45
gi|13676857 heat shock 70kDa protein 2 [Homo sapiens] 32 0.59
gi|225579067 solute carrier family 12, member 4 isoform e [Homo ... 32 1.0
gi|225579065 solute carrier family 12, member 4 isoform d [Homo ... 32 1.0
gi|225579063 solute carrier family 12, member 4 isoform c [Homo ... 32 1.0
gi|225579061 solute carrier family 12, member 4 isoform b [Homo ... 32 1.0
gi|4827006 solute carrier family 12, member 4 isoform a [Homo sa... 32 1.0
gi|34419635 heat shock 70kDa protein 6 (HSP70B') [Homo sapiens] 31 1.7
gi|7656950 voltage-dependent calcium channel gamma-5 subunit iso... 30 2.2
gi|134304840 KIAA0319 [Homo sapiens] 30 2.9
gi|7656981 claudin 15 [Homo sapiens] 30 2.9
gi|239757199 PREDICTED: zinc finger protein 56 [Homo sapiens] 30 3.8
gi|155969705 chloride channel Kb [Homo sapiens] 30 3.8
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 30 3.8
>gi|123317861 germ cell associated 1 isoform 2 [Homo sapiens]
Length = 326
Score = 674 bits (1738), Expect = 0.0
Identities = 326/326 (100%), Positives = 326/326 (100%)
Query: 1 MAKMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFD 60
MAKMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFD
Sbjct: 1 MAKMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFD 60
Query: 61 MPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTP 120
MPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTP
Sbjct: 61 MPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTP 120
Query: 121 PAKREILWLSLGTQITYIGLQFISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGM 180
PAKREILWLSLGTQITYIGLQFISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGM
Sbjct: 121 PAKREILWLSLGTQITYIGLQFISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGM 180
Query: 181 VAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAWLSFTCCMASAVTTFNTYTRMVLEF 240
VAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAWLSFTCCMASAVTTFNTYTRMVLEF
Sbjct: 181 VAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAWLSFTCCMASAVTTFNTYTRMVLEF 240
Query: 241 KCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDFYSEL 300
KCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDFYSEL
Sbjct: 241 KCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDFYSEL 300
Query: 301 RNKGFQRGASQELKEAVRSSVEEEQC 326
RNKGFQRGASQELKEAVRSSVEEEQC
Sbjct: 301 RNKGFQRGASQELKEAVRSSVEEEQC 326
>gi|123317881 germ cell associated 1 isoform 4 [Homo sapiens]
Length = 362
Score = 655 bits (1691), Expect = 0.0
Identities = 323/347 (93%), Positives = 324/347 (93%), Gaps = 23/347 (6%)
Query: 3 KMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 62
+MELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP
Sbjct: 16 EMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 75
Query: 63 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEP-------------- 108
VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEP
Sbjct: 76 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQFRAL 135
Query: 109 ---------GERCRSFIELTPPAKREILWLSLGTQITYIGLQFISFLLLLTDLLLTGNPA 159
GERCRSFIELTPPAKREILWLSLGTQITYIGLQFISFLLLLTDLLLTGNPA
Sbjct: 136 RSSGTAAAKGERCRSFIELTPPAKREILWLSLGTQITYIGLQFISFLLLLTDLLLTGNPA 195
Query: 160 CGLKLSAFAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAWLSF 219
CGLKLSAFAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAWLSF
Sbjct: 196 CGLKLSAFAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAWLSF 255
Query: 220 TCCMASAVTTFNTYTRMVLEFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSY 279
TCCMASAVTTFNTYTRMVLEFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSY
Sbjct: 256 TCCMASAVTTFNTYTRMVLEFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSY 315
Query: 280 HQYHNQPIHSVSEGVDFYSELRNKGFQRGASQELKEAVRSSVEEEQC 326
HQYHNQPIHSVSEGVDFYSELRNKGFQRGASQELKEAVRSSVEEEQC
Sbjct: 316 HQYHNQPIHSVSEGVDFYSELRNKGFQRGASQELKEAVRSSVEEEQC 362
>gi|157951718 GSG1-like isoform 1 [Homo sapiens]
Length = 331
Score = 256 bits (655), Expect = 1e-68
Identities = 124/256 (48%), Positives = 173/256 (67%), Gaps = 17/256 (6%)
Query: 14 RTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMPVSLDGDTNTST 73
R LL+ L++L+L F+TT+ L+ +W GTQ+VPKP C +G A C + + + +
Sbjct: 8 RALLAVALNLLALLFATTAFLTTHWCQGTQRVPKPGCGQGGRANCPNSGANATANGTAAP 67
Query: 74 QEVVQ--------------YNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELT 119
Y+WETGDDRF FR+F +G+W SCEE + GE+CRSFI+L
Sbjct: 68 AAAAAAATASGNGPPGGALYSWETGDDRFLFRNFHTGIWYSCEEELSGLGEKCRSFIDLA 127
Query: 120 PPAKREILWLSLGTQITYIGLQFISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLG 179
P +++ +LWLS+ +++ YI L + F L+ +L + N GLKL+AFAAV +VLSGLLG
Sbjct: 128 PASEKGVLWLSVVSEVLYILLLVVGFSLMCLELFHSSNVIDGLKLNAFAAVFTVLSGLLG 187
Query: 180 MVAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAWLSFTCCMASAVTTFNTYTRMVLE 239
MVAHMMY+QVFQ TV+LGPEDWRPH W+YGW+F +AW SFTCCMA++VTT N+YT+ V+E
Sbjct: 188 MVAHMMYTQVFQVTVSLGPEDWRPHSWDYGWSFCLAWGSFTCCMAASVTTLNSYTKTVIE 247
Query: 240 FKCKH---SKSFKENP 252
F+ K + ++E P
Sbjct: 248 FRHKRKVFEQGYREEP 263
>gi|123317847 germ cell associated 1 isoform 1 [Homo sapiens]
Length = 285
Score = 254 bits (650), Expect = 6e-68
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MAKMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFD 60
MAKMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFD
Sbjct: 1 MAKMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFD 60
Query: 61 MPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTP 120
MPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTP
Sbjct: 61 MPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTP 120
Query: 121 PAKR 124
PAKR
Sbjct: 121 PAKR 124
>gi|123317872 germ cell associated 1 isoform 3 [Homo sapiens]
Length = 321
Score = 236 bits (603), Expect = 2e-62
Identities = 121/145 (83%), Positives = 122/145 (84%), Gaps = 23/145 (15%)
Query: 3 KMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 62
+MELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP
Sbjct: 16 EMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 75
Query: 63 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEP-------------- 108
VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEP
Sbjct: 76 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQFRAL 135
Query: 109 ---------GERCRSFIELTPPAKR 124
GERCRSFIELTPPAKR
Sbjct: 136 RSSGTAAAKGERCRSFIELTPPAKR 160
>gi|169211272 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 187 bits (475), Expect = 1e-47
Identities = 96/231 (41%), Positives = 144/231 (62%), Gaps = 4/231 (1%)
Query: 13 QRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEK---GLAAKCFDMPVSLDGDT 69
Q+ L + L+L+FS T+++S++W GT++V KPLC+ G F S +G
Sbjct: 6 QQQALLLLPVCLALTFSLTAVVSSHWCEGTRRVVKPLCQDQPGGQHCIHFKRDNSSNGRM 65
Query: 70 NTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTPPAKREILWL 129
+ ++Q V+ Y WE GDD+F R F G+W SCEE++ E+CRSF + P ++ +LWL
Sbjct: 66 DNNSQAVL-YIWELGDDKFIQRGFHVGLWQSCEESLNGEDEKCRSFRSVVPAEEQGVLWL 124
Query: 130 SLGTQITYIGLQFISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHMMYSQV 189
S+G ++ I L S +LL + + L++ A A+ VL+GLLGMVAHMMY+ +
Sbjct: 125 SIGGEVLDIVLILTSAILLGSRVSCRSPGFHWLRVDALVAIFMVLAGLLGMVAHMMYTTI 184
Query: 190 FQATVNLGPEDWRPHVWNYGWAFYMAWLSFTCCMASAVTTFNTYTRMVLEF 240
FQ TVNLGPEDW+P W+YGW++ +AW SF C+A +V+ + +T LEF
Sbjct: 185 FQITVNLGPEDWKPQTWDYGWSYCLAWGSFALCLAVSVSAMSRFTAARLEF 235
>gi|169211660 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 187 bits (475), Expect = 1e-47
Identities = 96/231 (41%), Positives = 144/231 (62%), Gaps = 4/231 (1%)
Query: 13 QRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEK---GLAAKCFDMPVSLDGDT 69
Q+ L + L+L+FS T+++S++W GT++V KPLC+ G F S +G
Sbjct: 6 QQQALLLLPVCLALTFSLTAVVSSHWCEGTRRVVKPLCQDQPGGQHCIHFKRDNSSNGRM 65
Query: 70 NTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTPPAKREILWL 129
+ ++Q V+ Y WE GDD+F R F G+W SCEE++ E+CRSF + P ++ +LWL
Sbjct: 66 DNNSQAVL-YIWELGDDKFIQRGFHVGLWQSCEESLNGEDEKCRSFRSVVPAEEQGVLWL 124
Query: 130 SLGTQITYIGLQFISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHMMYSQV 189
S+G ++ I L S +LL + + L++ A A+ VL+GLLGMVAHMMY+ +
Sbjct: 125 SIGGEVLDIVLILTSAILLGSRVSCRSPGFHWLRVDALVAIFMVLAGLLGMVAHMMYTTI 184
Query: 190 FQATVNLGPEDWRPHVWNYGWAFYMAWLSFTCCMASAVTTFNTYTRMVLEF 240
FQ TVNLGPEDW+P W+YGW++ +AW SF C+A +V+ + +T LEF
Sbjct: 185 FQITVNLGPEDWKPQTWDYGWSYCLAWGSFALCLAVSVSAMSRFTAARLEF 235
>gi|169210878 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 187 bits (475), Expect = 1e-47
Identities = 96/231 (41%), Positives = 144/231 (62%), Gaps = 4/231 (1%)
Query: 13 QRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEK---GLAAKCFDMPVSLDGDT 69
Q+ L + L+L+FS T+++S++W GT++V KPLC+ G F S +G
Sbjct: 6 QQQALLLLPVCLALTFSLTAVVSSHWCEGTRRVVKPLCQDQPGGQHCIHFKRDNSSNGRM 65
Query: 70 NTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTPPAKREILWL 129
+ ++Q V+ Y WE GDD+F R F G+W SCEE++ E+CRSF + P ++ +LWL
Sbjct: 66 DNNSQAVL-YIWELGDDKFIQRGFHVGLWQSCEESLNGEDEKCRSFRSVVPAEEQGVLWL 124
Query: 130 SLGTQITYIGLQFISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHMMYSQV 189
S+G ++ I L S +LL + + L++ A A+ VL+GLLGMVAHMMY+ +
Sbjct: 125 SIGGEVLDIVLILTSAILLGSRVSCRSPGFHWLRVDALVAIFMVLAGLLGMVAHMMYTTI 184
Query: 190 FQATVNLGPEDWRPHVWNYGWAFYMAWLSFTCCMASAVTTFNTYTRMVLEF 240
FQ TVNLGPEDW+P W+YGW++ +AW SF C+A +V+ + +T LEF
Sbjct: 185 FQITVNLGPEDWKPQTWDYGWSYCLAWGSFALCLAVSVSAMSRFTAARLEF 235
>gi|21389571 GSG1-like isoform 2 [Homo sapiens]
Length = 176
Score = 143 bits (360), Expect = 2e-34
Identities = 66/105 (62%), Positives = 84/105 (80%), Gaps = 3/105 (2%)
Query: 151 DLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGW 210
+L + N GLKL+AFAAV +VLSGLLGMVAHMMY+QVFQ TV+LGPEDWRPH W+YGW
Sbjct: 4 ELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGW 63
Query: 211 AFYMAWLSFTCCMASAVTTFNTYTRMVLEFKCKH---SKSFKENP 252
+F +AW SFTCCMA++VTT N+YT+ V+EF+ K + ++E P
Sbjct: 64 SFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEP 108
>gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Homo
sapiens]
Length = 327
Score = 38.5 bits (88), Expect = 0.008
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 8/121 (6%)
Query: 145 FLLLLTDLLLTGNPACGL--------KLSAFAAVSSVLSGLLGMVAHMMYSQVFQATVNL 196
F +L T LLL G G + A + V +GL ++ ++Y +
Sbjct: 110 FPILSTILLLLGGLCIGAGRIYSRKNNIVLSAGILFVAAGLSNIIGIIVYISSNTGDPSD 169
Query: 197 GPEDWRPHVWNYGWAFYMAWLSFTCCMASAVTTFNTYTRMVLEFKCKHSKSFKENPNCLP 256
++ + + +NYGW+FY LSF V N Y E + K + F + + P
Sbjct: 170 KRDEDKKNHYNYGWSFYFGALSFIVAETVGVLAVNIYIEKNKELRFKTKREFLKASSSSP 229
Query: 257 H 257
+
Sbjct: 230 Y 230
>gi|124256496 heat shock 70kDa protein 1-like [Homo sapiens]
Length = 641
Score = 37.0 bits (84), Expect = 0.024
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 15/94 (15%)
Query: 234 TRMVLEFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEG 293
+ V EFK KH K +N + RRL +A S N I S+ EG
Sbjct: 241 SHFVEEFKRKHKKDISQNKRAV--------RRLRTACERAKRTLSSSTQANLEIDSLYEG 292
Query: 294 VDFYSELRNKGFQ-------RGASQELKEAVRSS 320
+DFY+ + F+ RG + +++A+R +
Sbjct: 293 IDFYTSITRARFEELCADLFRGTLEPVEKALRDA 326
>gi|24234686 heat shock 70kDa protein 8 isoform 2 [Homo sapiens]
Length = 493
Score = 35.0 bits (79), Expect = 0.091
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 237 VLEFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDF 296
+ EFK KH K EN + RRL +A S + I S+ EG+DF
Sbjct: 242 IAEFKRKHKKDISENKRAV--------RRLRTACERAKRTLSSSTQASIEIDSLYEGIDF 293
Query: 297 YSELRNKGFQ-------RGASQELKEAVRSS 320
Y+ + F+ RG +++A+R +
Sbjct: 294 YTSITRARFEELNADLFRGTLDPVEKALRDA 324
>gi|5729877 heat shock 70kDa protein 8 isoform 1 [Homo sapiens]
Length = 646
Score = 35.0 bits (79), Expect = 0.091
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 237 VLEFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDF 296
+ EFK KH K EN + RRL +A S + I S+ EG+DF
Sbjct: 242 IAEFKRKHKKDISENKRAV--------RRLRTACERAKRTLSSSTQASIEIDSLYEGIDF 293
Query: 297 YSELRNKGFQ-------RGASQELKEAVRSS 320
Y+ + F+ RG +++A+R +
Sbjct: 294 YTSITRARFEELNADLFRGTLDPVEKALRDA 324
>gi|5729756 voltage-dependent calcium channel gamma-3 subunit [Homo
sapiens]
Length = 315
Score = 34.3 bits (77), Expect = 0.15
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 170 VSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHV--WNYGWAFYMAWLSFTCCMASAV 227
VS+ LS ++G++ ++ + N G R ++YGW+FY SF V
Sbjct: 143 VSAGLSNIIGIIVYI--------SANAGDPGQRDSKKSYSYGWSFYFGAFSFIIAEIVGV 194
Query: 228 TTFNTYTRMVLEFKCK-HSKSFKENPNC-LPHHHQCFPRRLSS 268
+ Y + + K HS+ K++ LP + F RR SS
Sbjct: 195 VAVHIYIEKHQQLRAKSHSEFLKKSTFARLPPYRYRFRRRSSS 237
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 33.9 bits (76), Expect = 0.20
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 168 AAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAWLSFTCCMASAV 227
A + V +GL ++ ++Y ++ + + ++YGW+FY LSF V
Sbjct: 162 AGILFVAAGLSNIIGVIVYISANAGEPGPKRDEEKKNHYSYGWSFYFGGLSFILAEVIGV 221
Query: 228 TTFNTYTRMVLEFKCK 243
N Y E C+
Sbjct: 222 LAVNIYIERSREAHCQ 237
>gi|167466173 heat shock 70kDa protein 1B [Homo sapiens]
Length = 641
Score = 32.7 bits (73), Expect = 0.45
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 237 VLEFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDF 296
V EFK KH K +N + RRL +A S + I S+ EG+DF
Sbjct: 242 VEEFKRKHKKDISQNKRAV--------RRLRTACERAKRTLSSSTQASLEIDSLFEGIDF 293
Query: 297 YSELRNKGFQRGASQELKEAVRSSVE 322
Y+ + F+ S + RS++E
Sbjct: 294 YTSITRARFEELCS----DLFRSTLE 315
>gi|194248072 heat shock 70kDa protein 1A [Homo sapiens]
Length = 641
Score = 32.7 bits (73), Expect = 0.45
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 237 VLEFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDF 296
V EFK KH K +N + RRL +A S + I S+ EG+DF
Sbjct: 242 VEEFKRKHKKDISQNKRAV--------RRLRTACERAKRTLSSSTQASLEIDSLFEGIDF 293
Query: 297 YSELRNKGFQRGASQELKEAVRSSVE 322
Y+ + F+ S + RS++E
Sbjct: 294 YTSITRARFEELCS----DLFRSTLE 315
>gi|13676857 heat shock 70kDa protein 2 [Homo sapiens]
Length = 639
Score = 32.3 bits (72), Expect = 0.59
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 239 EFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDFYS 298
EFK KH K N + RRL +A S + I S+ EGVDFY+
Sbjct: 247 EFKRKHKKDIGPNKRAV--------RRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYT 298
Query: 299 ELRNKGFQ-------RGASQELKEAVRSS 320
+ F+ RG + +++A+R +
Sbjct: 299 SITRARFEELNADLFRGTLEPVEKALRDA 327
>gi|225579067 solute carrier family 12, member 4 isoform e [Homo
sapiens]
Length = 1054
Score = 31.6 bits (70), Expect = 1.0
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 143 ISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHM--MYSQVFQATVNLG--- 197
I FL + + G P L L+A A +L L MVA + M+ + VNL
Sbjct: 508 IPFLRVFGHGKVNGEPTWALLLTALIAELGILIASLDMVAPILSMFFLMCYLFVNLACAV 567
Query: 198 -----PEDWRPHVWNYGWAFYMAWLSFTCCMA 224
+WRP Y WA +++L + C+A
Sbjct: 568 QTLLRTPNWRPRFKYYHWA--LSFLGMSLCLA 597
>gi|225579065 solute carrier family 12, member 4 isoform d [Homo
sapiens]
Length = 1079
Score = 31.6 bits (70), Expect = 1.0
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 143 ISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHM--MYSQVFQATVNLG--- 197
I FL + + G P L L+A A +L L MVA + M+ + VNL
Sbjct: 533 IPFLRVFGHGKVNGEPTWALLLTALIAELGILIASLDMVAPILSMFFLMCYLFVNLACAV 592
Query: 198 -----PEDWRPHVWNYGWAFYMAWLSFTCCMA 224
+WRP Y WA +++L + C+A
Sbjct: 593 QTLLRTPNWRPRFKYYHWA--LSFLGMSLCLA 622
>gi|225579063 solute carrier family 12, member 4 isoform c [Homo
sapiens]
Length = 1087
Score = 31.6 bits (70), Expect = 1.0
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 143 ISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHM--MYSQVFQATVNLG--- 197
I FL + + G P L L+A A +L L MVA + M+ + VNL
Sbjct: 541 IPFLRVFGHGKVNGEPTWALLLTALIAELGILIASLDMVAPILSMFFLMCYLFVNLACAV 600
Query: 198 -----PEDWRPHVWNYGWAFYMAWLSFTCCMA 224
+WRP Y WA +++L + C+A
Sbjct: 601 QTLLRTPNWRPRFKYYHWA--LSFLGMSLCLA 630
>gi|225579061 solute carrier family 12, member 4 isoform b [Homo
sapiens]
Length = 1079
Score = 31.6 bits (70), Expect = 1.0
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 143 ISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHM--MYSQVFQATVNLG--- 197
I FL + + G P L L+A A +L L MVA + M+ + VNL
Sbjct: 539 IPFLRVFGHGKVNGEPTWALLLTALIAELGILIASLDMVAPILSMFFLMCYLFVNLACAV 598
Query: 198 -----PEDWRPHVWNYGWAFYMAWLSFTCCMA 224
+WRP Y WA +++L + C+A
Sbjct: 599 QTLLRTPNWRPRFKYYHWA--LSFLGMSLCLA 628
>gi|4827006 solute carrier family 12, member 4 isoform a [Homo
sapiens]
Length = 1085
Score = 31.6 bits (70), Expect = 1.0
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 143 ISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHM--MYSQVFQATVNLG--- 197
I FL + + G P L L+A A +L L MVA + M+ + VNL
Sbjct: 539 IPFLRVFGHGKVNGEPTWALLLTALIAELGILIASLDMVAPILSMFFLMCYLFVNLACAV 598
Query: 198 -----PEDWRPHVWNYGWAFYMAWLSFTCCMA 224
+WRP Y WA +++L + C+A
Sbjct: 599 QTLLRTPNWRPRFKYYHWA--LSFLGMSLCLA 628
>gi|34419635 heat shock 70kDa protein 6 (HSP70B') [Homo sapiens]
Length = 643
Score = 30.8 bits (68), Expect = 1.7
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 239 EFKCKHSKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDFYS 298
EF+ KH K N L RRL +A S I S+ EGVDFY+
Sbjct: 246 EFRRKHGKDLSGNKRAL--------RRLRTACERAKRTLSSSTQATLEIDSLFEGVDFYT 297
Query: 299 ELRNKGFQRGASQELKEAVRSSVE 322
+ F+ S + RS++E
Sbjct: 298 SITRARFEELCS----DLFRSTLE 317
>gi|7656950 voltage-dependent calcium channel gamma-5 subunit
isoform b [Homo sapiens]
Length = 296
Score = 30.4 bits (67), Expect = 2.2
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 92 SFRSGMWLSCEETVEEPGERCRSF-------IELTPPAKREIL-WLSLGTQITYIGLQFI 143
S SG+W C EE G RC + +LT + +L + T + L F+
Sbjct: 53 SLHSGLWRVCFLAGEERG-RCFTIEYVMPMNTQLTSESTVNVLKMIRSATPFPLVSLFFM 111
Query: 144 SFLLLLTDLLLTGNPACGLKLSAFAA-VSSVLSGLLGMVAHMMY-SQVFQATVNLGPEDW 201
+L ++ G+ + AF + + +LSGL +V ++Y S + +N +
Sbjct: 112 FIGFILNNI---GHIRPHRTILAFVSGIFFILSGLSLVVGLVLYISSINDEMLNRTKDAE 168
Query: 202 RPHVWNYGWAFYMAWLSFTCCMASAVT 228
+ YGW+F A +SF VT
Sbjct: 169 TYFNYKYGWSFAFAAISFLLTEVKPVT 195
>gi|134304840 KIAA0319 [Homo sapiens]
Length = 1072
Score = 30.0 bits (66), Expect = 2.9
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 256 PHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIHSVSEGVDFYSELRNKGFQRGASQELKE 315
PH C P+++ GP+ SY + +P+ ++ +D+ + N+G G + E
Sbjct: 83 PHKENCEPKKM-------GPIRSYLTFVLRPVQRPAQLLDYGDMMLNRGSPSGIWGDSPE 135
Query: 316 AVRSSV 321
+R +
Sbjct: 136 DIRKDL 141
>gi|7656981 claudin 15 [Homo sapiens]
Length = 228
Score = 30.0 bits (66), Expect = 2.9
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 135 ITYIGLQFISFLLLLTDLLLTGNPACGL----KLSAFAAVSSVLSGLLGMVAHMMYSQVF 190
IT I L F+ LL + L T L KL+A A +L+G+ GMVA Y+ F
Sbjct: 83 ITAILLGFLGLLLGIAGLRCTNIGGLELSRKAKLAATAGALHILAGICGMVAISWYA--F 140
Query: 191 QATVNLGPEDWRPHVWNYGWAFYMAW 216
T + + + G A Y+ W
Sbjct: 141 NITRDFFDPLYPGTKYELGPALYLGW 166
>gi|239757199 PREDICTED: zinc finger protein 56 [Homo sapiens]
Length = 592
Score = 29.6 bits (65), Expect = 3.8
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 27 SFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQ 78
+F+ S L+NY + T + P E G+A K F + G T TS + VV+
Sbjct: 499 AFNQPSTLTNYEKIHTGQKPYKCEECGMAYKKFSSKIIHTGKTPTSVKNVVK 550
>gi|155969705 chloride channel Kb [Homo sapiens]
Length = 687
Score = 29.6 bits (65), Expect = 3.8
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 250 ENPNCLPHHHQCFPRRLSSAAPT------VGPLTSYHQYHN 284
E P+ P H QC L++ PT + P TS H+ HN
Sbjct: 606 EPPSWAPGHQQCLQDILAAGCPTEPVTLKLSPETSLHEAHN 646
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 29.6 bits (65), Expect = 3.8
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 19/97 (19%)
Query: 3 KMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 62
K+ L + ++ ++S +L + ++N Q VP C L ++ ++MP
Sbjct: 2514 KLRLQHSIEREKLIVSCEQEILRVHCRAARTIAN------QAVPFSACTMLLDSEVYNMP 2567
Query: 63 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWL 99
+ GD N S + DRF+ R F S WL
Sbjct: 2568 LESQGDENKSVR-----------DRFNARQFIS--WL 2591
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.132 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,410,198
Number of Sequences: 37866
Number of extensions: 524551
Number of successful extensions: 1263
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1231
Number of HSP's gapped (non-prelim): 48
length of query: 326
length of database: 18,247,518
effective HSP length: 103
effective length of query: 223
effective length of database: 14,347,320
effective search space: 3199452360
effective search space used: 3199452360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.