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Search of human proteins with 123317847
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|123317847 germ cell associated 1 isoform 1 [Homo sapiens]
(285 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|123317847 germ cell associated 1 isoform 1 [Homo sapiens] 604 e-173
gi|123317872 germ cell associated 1 isoform 3 [Homo sapiens] 586 e-168
gi|123317861 germ cell associated 1 isoform 2 [Homo sapiens] 254 5e-68
gi|123317881 germ cell associated 1 isoform 4 [Homo sapiens] 236 1e-62
gi|157951718 GSG1-like isoform 1 [Homo sapiens] 102 3e-22
gi|169211272 PREDICTED: germ cell-specific gene 1-like protein 2... 82 5e-16
gi|169211660 PREDICTED: germ cell-specific gene 1-like protein 2... 82 5e-16
gi|169210878 PREDICTED: germ cell-specific gene 1-like protein 2... 82 5e-16
gi|18640734 contactin associated protein-like 5 [Homo sapiens] 31 1.4
gi|112363080 microtubule associated serine/threonine kinase 2 [H... 30 2.4
gi|38045963 aiolos isoform 4 [Homo sapiens] 30 2.4
gi|4557377 Bruton agammaglobulinemia tyrosine kinase [Homo sapiens] 30 3.2
gi|239757199 PREDICTED: zinc finger protein 56 [Homo sapiens] 30 3.2
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 30 3.2
gi|116256477 Down syndrome critical region gene 1-like 1 protein... 30 3.2
gi|150456436 hypothetical protein LOC55719 isoform 1 [Homo sapiens] 30 3.2
gi|209915547 hypothetical protein LOC55719 isoform 2 [Homo sapiens] 30 3.2
gi|187936949 solute carrier family 39 (zinc transporter), member... 29 4.1
gi|55741750 solute carrier family 39 (zinc transporter), member ... 29 4.1
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 28 7.0
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 28 7.0
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 28 7.0
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 28 7.0
gi|55770876 notch4 preproprotein [Homo sapiens] 28 9.2
>gi|123317847 germ cell associated 1 isoform 1 [Homo sapiens]
Length = 285
Score = 604 bits (1557), Expect = e-173
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MAKMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFD 60
MAKMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFD
Sbjct: 1 MAKMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFD 60
Query: 61 MPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTP 120
MPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTP
Sbjct: 61 MPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTP 120
Query: 121 PAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKASLPSPPLGLCGKNPMVIPGNADHLHR 180
PAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKASLPSPPLGLCGKNPMVIPGNADHLHR
Sbjct: 121 PAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKASLPSPPLGLCGKNPMVIPGNADHLHR 180
Query: 181 TSIHQLPPATNRLATHWEPCLWAQTERLCCCFLCPVRSPGDGGPHDVFTSLPSDCQLGSR 240
TSIHQLPPATNRLATHWEPCLWAQTERLCCCFLCPVRSPGDGGPHDVFTSLPSDCQLGSR
Sbjct: 181 TSIHQLPPATNRLATHWEPCLWAQTERLCCCFLCPVRSPGDGGPHDVFTSLPSDCQLGSR 240
Query: 241 RLETTCLELWLGLLHGLALLHLLHGVGCHHLQHVHQDGAGVQVQA 285
RLETTCLELWLGLLHGLALLHLLHGVGCHHLQHVHQDGAGVQVQA
Sbjct: 241 RLETTCLELWLGLLHGLALLHLLHGVGCHHLQHVHQDGAGVQVQA 285
>gi|123317872 germ cell associated 1 isoform 3 [Homo sapiens]
Length = 321
Score = 586 bits (1510), Expect = e-168
Identities = 282/306 (92%), Positives = 283/306 (92%), Gaps = 23/306 (7%)
Query: 3 KMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 62
+MELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP
Sbjct: 16 EMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 75
Query: 63 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEP-------------- 108
VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEP
Sbjct: 76 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQFRAL 135
Query: 109 ---------GERCRSFIELTPPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKASLPSP 159
GERCRSFIELTPPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKASLPSP
Sbjct: 136 RSSGTAAAKGERCRSFIELTPPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKASLPSP 195
Query: 160 PLGLCGKNPMVIPGNADHLHRTSIHQLPPATNRLATHWEPCLWAQTERLCCCFLCPVRSP 219
PLGLCGKNPMVIPGNADHLHRTSIHQLPPATNRLATHWEPCLWAQTERLCCCFLCPVRSP
Sbjct: 196 PLGLCGKNPMVIPGNADHLHRTSIHQLPPATNRLATHWEPCLWAQTERLCCCFLCPVRSP 255
Query: 220 GDGGPHDVFTSLPSDCQLGSRRLETTCLELWLGLLHGLALLHLLHGVGCHHLQHVHQDGA 279
GDGGPHDVFTSLPSDCQLGSRRLETTCLELWLGLLHGLALLHLLHGVGCHHLQHVHQDGA
Sbjct: 256 GDGGPHDVFTSLPSDCQLGSRRLETTCLELWLGLLHGLALLHLLHGVGCHHLQHVHQDGA 315
Query: 280 GVQVQA 285
GVQVQA
Sbjct: 316 GVQVQA 321
>gi|123317861 germ cell associated 1 isoform 2 [Homo sapiens]
Length = 326
Score = 254 bits (650), Expect = 5e-68
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MAKMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFD 60
MAKMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFD
Sbjct: 1 MAKMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFD 60
Query: 61 MPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTP 120
MPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTP
Sbjct: 61 MPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTP 120
Query: 121 PAKR 124
PAKR
Sbjct: 121 PAKR 124
>gi|123317881 germ cell associated 1 isoform 4 [Homo sapiens]
Length = 362
Score = 236 bits (603), Expect = 1e-62
Identities = 121/145 (83%), Positives = 122/145 (84%), Gaps = 23/145 (15%)
Query: 3 KMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 62
+MELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP
Sbjct: 16 EMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 75
Query: 63 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEP-------------- 108
VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEP
Sbjct: 76 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQFRAL 135
Query: 109 ---------GERCRSFIELTPPAKR 124
GERCRSFIELTPPAKR
Sbjct: 136 RSSGTAAAKGERCRSFIELTPPAKR 160
>gi|157951718 GSG1-like isoform 1 [Homo sapiens]
Length = 331
Score = 102 bits (255), Expect = 3e-22
Identities = 50/126 (39%), Positives = 74/126 (58%), Gaps = 14/126 (11%)
Query: 14 RTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMPVSLDGDTNTST 73
R LL+ L++L+L F+TT+ L+ +W GTQ+VPKP C +G A C + + + +
Sbjct: 8 RALLAVALNLLALLFATTAFLTTHWCQGTQRVPKPGCGQGGRANCPNSGANATANGTAAP 67
Query: 74 QEVVQ--------------YNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELT 119
Y+WETGDDRF FR+F +G+W SCEE + GE+CRSFI+L
Sbjct: 68 AAAAAAATASGNGPPGGALYSWETGDDRFLFRNFHTGIWYSCEEELSGLGEKCRSFIDLA 127
Query: 120 PPAKRG 125
P +++G
Sbjct: 128 PASEKG 133
>gi|169211272 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 82.0 bits (201), Expect = 5e-16
Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 4/116 (3%)
Query: 13 QRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEK---GLAAKCFDMPVSLDGDT 69
Q+ L + L+L+FS T+++S++W GT++V KPLC+ G F S +G
Sbjct: 6 QQQALLLLPVCLALTFSLTAVVSSHWCEGTRRVVKPLCQDQPGGQHCIHFKRDNSSNGRM 65
Query: 70 NTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTPPAKRG 125
+ ++Q V+ Y WE GDD+F R F G+W SCEE++ E+CRSF + P ++G
Sbjct: 66 DNNSQAVL-YIWELGDDKFIQRGFHVGLWQSCEESLNGEDEKCRSFRSVVPAEEQG 120
>gi|169211660 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 82.0 bits (201), Expect = 5e-16
Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 4/116 (3%)
Query: 13 QRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEK---GLAAKCFDMPVSLDGDT 69
Q+ L + L+L+FS T+++S++W GT++V KPLC+ G F S +G
Sbjct: 6 QQQALLLLPVCLALTFSLTAVVSSHWCEGTRRVVKPLCQDQPGGQHCIHFKRDNSSNGRM 65
Query: 70 NTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTPPAKRG 125
+ ++Q V+ Y WE GDD+F R F G+W SCEE++ E+CRSF + P ++G
Sbjct: 66 DNNSQAVL-YIWELGDDKFIQRGFHVGLWQSCEESLNGEDEKCRSFRSVVPAEEQG 120
>gi|169210878 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 82.0 bits (201), Expect = 5e-16
Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 4/116 (3%)
Query: 13 QRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEK---GLAAKCFDMPVSLDGDT 69
Q+ L + L+L+FS T+++S++W GT++V KPLC+ G F S +G
Sbjct: 6 QQQALLLLPVCLALTFSLTAVVSSHWCEGTRRVVKPLCQDQPGGQHCIHFKRDNSSNGRM 65
Query: 70 NTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTPPAKRG 125
+ ++Q V+ Y WE GDD+F R F G+W SCEE++ E+CRSF + P ++G
Sbjct: 66 DNNSQAVL-YIWELGDDKFIQRGFHVGLWQSCEESLNGEDEKCRSFRSVVPAEEQG 120
>gi|18640734 contactin associated protein-like 5 [Homo sapiens]
Length = 1306
Score = 30.8 bits (68), Expect = 1.4
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 11/113 (9%)
Query: 22 SMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQYNW 81
S+ L+ T L S W +G C+ LA+ M S D T T Q NW
Sbjct: 3 SLPRLTSVLTLLFSGLWHLGLTATNYN-CDDPLASLLSPMAFSSSSDL-TGTHSPAQLNW 60
Query: 82 ETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELTPPAKRGEKGLLEFAT 134
G +S + WL + G R +E+T A +G G ++ T
Sbjct: 61 RVGTGGWSPADSNAQQWLQM-----DLGNR----VEITAVATQGRYGSSDWVT 104
>gi|112363080 microtubule associated serine/threonine kinase 2 [Homo
sapiens]
Length = 1798
Score = 30.0 bits (66), Expect = 2.4
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 135 LQGPCHPTLRFGGKRLMEKASLPS---PPLGLCGKNPMVIPGN---ADHLHRTSIHQLPP 188
++ P P R G + +E+A+ S P LG G + P A HLH ++ L P
Sbjct: 1573 MESPSGPHRRLGSPQAIEEAASSSSAGPNLGQSGATDPIPPEGCWKAQHLHTQALTALSP 1632
Query: 189 ATNRL 193
+T+ L
Sbjct: 1633 STSGL 1637
>gi|38045963 aiolos isoform 4 [Homo sapiens]
Length = 470
Score = 30.0 bits (66), Expect = 2.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 104 TVEEPGERCRSFIELTPPAKRGEK 127
++EE ERCR+F++ T P GEK
Sbjct: 216 SLEEHKERCRTFLQSTDPGDTGEK 239
>gi|4557377 Bruton agammaglobulinemia tyrosine kinase [Homo sapiens]
Length = 659
Score = 29.6 bits (65), Expect = 3.2
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 151 MEKASL----PSPPLGLCGKNPMVIPGNADHLHRTSIHQLPPA---TNRLATHWEPCLWA 203
ME+ S+ P P + + P+ + + L + IHQL + L + PC W
Sbjct: 89 MEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIRYNSDLVQKYHPCFWI 148
Query: 204 QTERLCC 210
+ LCC
Sbjct: 149 DGQYLCC 155
>gi|239757199 PREDICTED: zinc finger protein 56 [Homo sapiens]
Length = 592
Score = 29.6 bits (65), Expect = 3.2
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 27 SFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQ 78
+F+ S L+NY + T + P E G+A K F + G T TS + VV+
Sbjct: 499 AFNQPSTLTNYEKIHTGQKPYKCEECGMAYKKFSSKIIHTGKTPTSVKNVVK 550
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 29.6 bits (65), Expect = 3.2
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 19/97 (19%)
Query: 3 KMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 62
K+ L + ++ ++S +L + ++N Q VP C L ++ ++MP
Sbjct: 2514 KLRLQHSIEREKLIVSCEQEILRVHCRAARTIAN------QAVPFSACTMLLDSEVYNMP 2567
Query: 63 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWL 99
+ GD N S + DRF+ R F S WL
Sbjct: 2568 LESQGDENKSVR-----------DRFNARQFIS--WL 2591
>gi|116256477 Down syndrome critical region gene 1-like 1 protein
[Homo sapiens]
Length = 197
Score = 29.6 bits (65), Expect = 3.2
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 46 PKPLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETV 105
P C+ C V ++ TN +E + + T DD +F+ F+S +
Sbjct: 4 PSMDCDVSTLVACV---VDVEVFTNQEVKEKFEGLFRTYDDCVTFQLFKS--FRRVRINF 58
Query: 106 EEPGERCRSFIELTPPAKRGEKGLLEFATLQGP 138
P R+ IEL RG+K L FA +Q P
Sbjct: 59 SNPKSAARARIELHETQFRGKKLKLYFAQVQTP 91
>gi|150456436 hypothetical protein LOC55719 isoform 1 [Homo sapiens]
Length = 1173
Score = 29.6 bits (65), Expect = 3.2
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 106 EEPGERCRSFIELTPPAKRGEKGLLEFATLQGPCHPTLRFGGKRL 150
E PG+R +S I+ PA + ++ +L+ P +++GG RL
Sbjct: 42 ESPGDRKQSIIDFFKPASKQDRHMLD-----SPQKSNIKYGGSRL 81
>gi|209915547 hypothetical protein LOC55719 isoform 2 [Homo sapiens]
Length = 1186
Score = 29.6 bits (65), Expect = 3.2
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 106 EEPGERCRSFIELTPPAKRGEKGLLEFATLQGPCHPTLRFGGKRL 150
E PG+R +S I+ PA + ++ +L+ P +++GG RL
Sbjct: 42 ESPGDRKQSIIDFFKPASKQDRHMLD-----SPQKSNIKYGGSRL 81
>gi|187936949 solute carrier family 39 (zinc transporter), member 10
[Homo sapiens]
Length = 831
Score = 29.3 bits (64), Expect = 4.1
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 242 LETTCLELWLGLLHGLALLHLL-HGVGCHHLQHVHQDGAG 280
L T + L +G + G ALLHLL H G H H H G G
Sbjct: 439 LLTFLVALAVGTMSGDALLHLLPHSQGGHDHSHQHAHGHG 478
>gi|55741750 solute carrier family 39 (zinc transporter), member 10
[Homo sapiens]
Length = 831
Score = 29.3 bits (64), Expect = 4.1
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 242 LETTCLELWLGLLHGLALLHLL-HGVGCHHLQHVHQDGAG 280
L T + L +G + G ALLHLL H G H H H G G
Sbjct: 439 LLTFLVALAVGTMSGDALLHLLPHSQGGHDHSHQHAHGHG 478
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 28.5 bits (62), Expect = 7.0
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 120 PPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKASLPSPP--LGLCG 165
PP RG+ G L+ +L G P G + + P PP LG CG
Sbjct: 1341 PPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCG 1388
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 28.5 bits (62), Expect = 7.0
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 120 PPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKASLPSPP--LGLCG 165
PP RG+ G L+ +L G P G + + P PP LG CG
Sbjct: 1341 PPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCG 1388
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 28.5 bits (62), Expect = 7.0
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 120 PPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKASLPSPP--LGLCG 165
PP RG+ G L+ +L G P G + + P PP LG CG
Sbjct: 1341 PPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCG 1388
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 28.5 bits (62), Expect = 7.0
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 120 PPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKASLPSPP--LGLCG 165
PP RG+ G L+ +L G P G + + P PP LG CG
Sbjct: 1341 PPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCG 1388
>gi|55770876 notch4 preproprotein [Homo sapiens]
Length = 2003
Score = 28.1 bits (61), Expect = 9.2
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 100 SCEETVEE-------PGERC----RSFIELTPPAKRGEKGLLEFATLQGPCH 140
SCEE +++ PG C SF L PP + G LE L PCH
Sbjct: 351 SCEENLDDCIAATCAPGSTCIDRVGSFSCLCPPGRTGLLCHLEDMCLSQPCH 402
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,976,489
Number of Sequences: 37866
Number of extensions: 653345
Number of successful extensions: 1483
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1466
Number of HSP's gapped (non-prelim): 26
length of query: 285
length of database: 18,247,518
effective HSP length: 101
effective length of query: 184
effective length of database: 14,423,052
effective search space: 2653841568
effective search space used: 2653841568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.