Guide to the Human Genome
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Name: SYT16 Sequence: fasta or formatted (645aa) NCBI GI: 123173752
Description:

synaptotagmin XIV-like

Referenced in:

ER, Golgi, and the Secretory Pathway
Synapses

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         32           2
 C cysteine            1.4          9           2
 D aspartate           6.2         40           2
 E glutamate           8.2         53           3
 F phenylalanine       3.6         23           2
 G glycine             6.0         39           2
 H histidine           3.3         21           2
 I isoleucine          2.9         19           1
 K lysine              5.0         32           2
 L leucine             8.4         54           2
 M methionine          2.5         16           2
 N asparagine          3.7         24           1
 P proline             3.7         24           1
 Q glutamine           6.7         43           2
 R arginine            5.7         37           2
 S serine             13.6         88           3
 T threonine           4.8         31           2
 V valine              6.0         39           2
 W tryptophan          1.4          9           1
 Y tyrosine            1.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptotagmin XIV-like 
SYT14                 0.324   synaptotagmin XIV isoform 2 
SYT14                 0.324   synaptotagmin XIV isoform 4 
SYT14                 0.316   synaptotagmin XIV isoform 3 
SYT14                 0.316   synaptotagmin XIV isoform 1 
SYT9                  0.071   synaptotagmin IX 
SYT10                 0.071   synaptotagmin X 
SYT4                  0.070   synaptotagmin IV 
SYT3                  0.067   synaptotagmin III 
SYT3                  0.067   synaptotagmin III 
SYT3                  0.067   synaptotagmin III 
DOC2A                 0.066   double C2-like domains, alpha 
SYT6                  0.065   synaptotagmin VI 
SYT1                  0.063   synaptotagmin I 
SYT1                  0.063   synaptotagmin I 
SYT1                  0.063   synaptotagmin I 
SYT12                 0.063   synaptotagmin XII 
RPH3A                 0.063   rabphilin 3A homolog isoform 1 
RPH3A                 0.063   rabphilin 3A homolog isoform 2 
SYT2                  0.061   synaptotagmin II 
SYT2                  0.061   synaptotagmin II 
SYT7                  0.059   synaptotagmin VII 
DOC2B                 0.059   double C2-like domains, beta 
SYT11                 0.056   synaptotagmin XI 
SYT5                  0.054   synaptotagmin V 
SYT17                 0.053   B/K protein 
LOC390213             0.047   PREDICTED: hypothetical protein LOC390213 
SYT15                 0.037   synaptotagmin XV isoform a 
LOC390213             0.032   PREDICTED: similar to hCG21066 
LOC390213             0.032   PREDICTED: similar to hCG21066 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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