Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: STARD5 Sequence: fasta or formatted (213aa) NCBI GI: 32526915
Description:

StAR-related lipid transfer protein 5

Referenced in:

Cholesterol Biosynthesis

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         12           2
 C cysteine            3.3          7           1
 D aspartate           4.7         10           1
 E glutamate           6.6         14           2
 F phenylalanine       5.6         12           2
 G glycine             7.5         16           2
 H histidine           2.3          5           1
 I isoleucine          3.3          7           2
 K lysine              4.7         10           1
 L leucine             7.0         15           1
 M methionine          2.3          5           1
 N asparagine          3.8          8           1
 P proline             7.5         16           2
 Q glutamine           2.8          6           1
 R arginine            5.6         12           2
 S serine              6.6         14           2
 T threonine           6.6         14           1
 V valine              9.4         20           2
 W tryptophan          1.9          4           1
 Y tyrosine            2.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   StAR-related lipid transfer protein 5 
STARD6                0.276   START domain containing protein 6 
STARD4                0.252   StAR-related lipid transfer (START) domain containin...
STAR                  0.106   steroidogenic acute regulatory protein isoform 1 [Ho...
STARD3                0.104   StAR-related lipid transfer (START) domain containin...
STAR                  0.075   steroidogenic acute regulatory protein isoform 2 [Ho...
HGFAC                 0.012   HGF activator preproprotein 
STARD7                0.009   START domain containing 7 
ELFN2                 0.007   leucine rich repeat containing 62 
VPS4A                 0.005   vacuolar protein sorting factor 4A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press