Guide to the Human Genome
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Name: STARD6 Sequence: fasta or formatted (220aa) NCBI GI: 21040261
Description:

START domain containing protein 6

Referenced in:

Cholesterol Biosynthesis

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          9           1
 C cysteine            1.4          3           1
 D aspartate           5.0         11           1
 E glutamate           4.1          9           2
 F phenylalanine       5.0         11           1
 G glycine             5.5         12           1
 H histidine           3.6          8           2
 I isoleucine          8.2         18           2
 K lysine              7.3         16           2
 L leucine             4.5         10           1
 M methionine          3.2          7           1
 N asparagine          5.5         12           1
 P proline             5.5         12           2
 Q glutamine           3.2          7           2
 R arginine            5.5         12           2
 S serine             11.4         25           2
 T threonine           5.5         12           1
 V valine              6.4         14           2
 W tryptophan          0.9          2           1
 Y tyrosine            4.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   START domain containing protein 6 
STARD5                0.274   StAR-related lipid transfer protein 5 
STARD4                0.204   StAR-related lipid transfer (START) domain containin...
STARD3                0.124   StAR-related lipid transfer (START) domain containin...
STAR                  0.124   steroidogenic acute regulatory protein isoform 1 [Ho...
STAR                  0.073   steroidogenic acute regulatory protein isoform 2 [Ho...
STARD7                0.040   START domain containing 7 
ACOT11                0.035   thioesterase, adipose associated isoform BFIT2 [Homo...
ACOT11                0.035   thioesterase, adipose associated isoform BFIT1 [Homo...
ACOT12                0.030   acyl-CoA thioesterase 12 
STARD10               0.019   START domain containing 10 
JARID2                0.007   jumonji, AT rich interactive domain 2 protein 
SMG7                  0.007   SMG-7 homolog isoform 1 
SMG7                  0.007   SMG-7 homolog isoform 4 
SMG7                  0.007   SMG-7 homolog isoform 2 
WDR42A                0.007   H326 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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