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Search of human proteins with 31563396
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31563396 chemokine-like factor superfamily 1 isoform 3 [Homo
sapiens]
(122 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31563396 chemokine-like factor superfamily 1 isoform 3 [Homo ... 241 1e-64
gi|31563398 chemokine-like factor superfamily 1 isoform 4 [Homo ... 224 1e-59
gi|31563392 chemokine-like factor superfamily 1 isoform 1 [Homo ... 206 3e-54
gi|148743783 chemokine-like factor superfamily 1 isoform 13 [Hom... 177 1e-45
gi|31563402 chemokine-like factor superfamily 1 isoform 5 [Homo ... 112 7e-26
gi|31563394 chemokine-like factor superfamily 1 isoform 2 [Homo ... 95 1e-20
gi|148743778 chemokine-like factor superfamily 1 isoform 14 [Hom... 68 1e-12
gi|31563424 chemokine-like factor superfamily 1 isoform 12 [Homo... 58 2e-09
gi|8393581 chemokine-like factor isoform a [Homo sapiens] 35 0.011
gi|32307154 chemokine-like factor isoform b [Homo sapiens] 35 0.011
gi|7705887 hypothetical protein LOC51161 [Homo sapiens] 30 0.58
gi|195972903 zinc finger protein 385A isoform a [Homo sapiens] 29 1.00
gi|24308079 zinc finger protein 385A isoform c [Homo sapiens] 29 1.00
gi|93141024 chemokine-like factor isoform e [Homo sapiens] 28 1.3
gi|134053883 intestinal facilitative glucose transporter 7 [Homo... 27 4.9
gi|33469919 minichromosome maintenance complex component 4 [Homo... 26 6.5
gi|33469917 minichromosome maintenance complex component 4 [Homo... 26 6.5
gi|92110055 histidine decarboxylase [Homo sapiens] 26 8.4
gi|169160859 PREDICTED: similar to actin, gamma 1 [Homo sapiens] 26 8.4
>gi|31563396 chemokine-like factor superfamily 1 isoform 3 [Homo
sapiens]
Length = 122
Score = 241 bits (614), Expect = 1e-64
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAALASSGSVDLTNSIITAVFLSVVAILAMQEKKRRH 60
MDPEHAKPESSEAPSGNLKQPETAAALASSGSVDLTNSIITAVFLSVVAILAMQEKKRRH
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALASSGSVDLTNSIITAVFLSVVAILAMQEKKRRH 60
Query: 61 LLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQR 120
LLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQR
Sbjct: 61 LLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQR 120
Query: 121 PA 122
PA
Sbjct: 121 PA 122
>gi|31563398 chemokine-like factor superfamily 1 isoform 4 [Homo
sapiens]
Length = 116
Score = 224 bits (571), Expect = 1e-59
Identities = 116/122 (95%), Positives = 116/122 (95%), Gaps = 6/122 (4%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAALASSGSVDLTNSIITAVFLSVVAILAMQEKKRRH 60
MDPEHAKPESSEAPSGNLKQPETAAAL DLTNSIITAVFLSVVAILAMQEKKRRH
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAAL------DLTNSIITAVFLSVVAILAMQEKKRRH 54
Query: 61 LLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQR 120
LLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQR
Sbjct: 55 LLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQR 114
Query: 121 PA 122
PA
Sbjct: 115 PA 116
>gi|31563392 chemokine-like factor superfamily 1 isoform 1 [Homo
sapiens]
Length = 169
Score = 206 bits (525), Expect = 3e-54
Identities = 117/169 (69%), Positives = 119/169 (70%), Gaps = 47/169 (27%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAAL--------------ASSGSV------------- 33
MDPEHAKPESSEAPSGNLKQPETAAAL A+ +
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALSLILGALACFIITQANESFITITSLEICIVVFF 60
Query: 34 --------------------DLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAV 73
DLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAV
Sbjct: 61 ILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAV 120
Query: 74 IVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQRPA 122
IVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQRPA
Sbjct: 121 IVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQRPA 169
>gi|148743783 chemokine-like factor superfamily 1 isoform 13 [Homo
sapiens]
Length = 286
Score = 177 bits (450), Expect = 1e-45
Identities = 89/90 (98%), Positives = 90/90 (100%)
Query: 33 VDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLK 92
+DLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLK
Sbjct: 197 LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLK 256
Query: 93 RFLGVEVERKLSPAKDAYPETGPDAPQRPA 122
RFLGVEVERKLSPAKDAYPETGPDAPQRPA
Sbjct: 257 RFLGVEVERKLSPAKDAYPETGPDAPQRPA 286
Score = 68.2 bits (165), Expect = 1e-12
Identities = 33/33 (100%), Positives = 33/33 (100%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAALASSGSV 33
MDPEHAKPESSEAPSGNLKQPETAAALASSGSV
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALASSGSV 33
>gi|31563402 chemokine-like factor superfamily 1 isoform 5 [Homo
sapiens]
Length = 61
Score = 112 bits (280), Expect = 7e-26
Identities = 60/66 (90%), Positives = 60/66 (90%), Gaps = 6/66 (9%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAALASSGSVDLTNSIITAVFLSVVAILAMQEKKRRH 60
MDPEHAKPESSEAPSGNLKQPETAAAL DLTNSIITAVFLSVVAILAMQEKKRRH
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAAL------DLTNSIITAVFLSVVAILAMQEKKRRH 54
Query: 61 LLYVGG 66
LLYVGG
Sbjct: 55 LLYVGG 60
>gi|31563394 chemokine-like factor superfamily 1 isoform 2 [Homo
sapiens]
Length = 114
Score = 94.7 bits (234), Expect = 1e-20
Identities = 61/113 (53%), Positives = 63/113 (55%), Gaps = 47/113 (41%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAAL--------------ASSGSV------------- 33
MDPEHAKPESSEAPSGNLKQPETAAAL A+ +
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALSLILGALACFIITQANESFITITSLEICIVVFF 60
Query: 34 --------------------DLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 66
DLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG
Sbjct: 61 ILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 113
>gi|148743778 chemokine-like factor superfamily 1 isoform 14 [Homo
sapiens]
Length = 231
Score = 68.2 bits (165), Expect = 1e-12
Identities = 33/33 (100%), Positives = 33/33 (100%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAALASSGSV 33
MDPEHAKPESSEAPSGNLKQPETAAALASSGSV
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALASSGSV 33
Score = 65.9 bits (159), Expect = 7e-12
Identities = 33/34 (97%), Positives = 34/34 (100%)
Query: 33 VDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 66
+DLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG
Sbjct: 197 LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 230
>gi|31563424 chemokine-like factor superfamily 1 isoform 12 [Homo
sapiens]
Length = 28
Score = 58.2 bits (139), Expect = 2e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAAL 27
MDPEHAKPESSEAPSGNLKQPETAAAL
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAAL 27
>gi|8393581 chemokine-like factor isoform a [Homo sapiens]
Length = 152
Score = 35.4 bits (80), Expect = 0.011
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 33 VDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAVIVCCI-DAFVVTTKMRTN 90
+D+ NS++T VF+ +V++LA+ + L VGG + VCC+ D ++ K+ N
Sbjct: 79 LDIINSLVTTVFMLIVSVLALIPETT--TLTVGGGVFALVTAVCCLADGALIYRKLLFN 135
>gi|32307154 chemokine-like factor isoform b [Homo sapiens]
Length = 99
Score = 35.4 bits (80), Expect = 0.011
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 33 VDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAVIVCCI-DAFVVTTKMRTN 90
+D+ NS++T VF+ +V++LA+ + L VGG + VCC+ D ++ K+ N
Sbjct: 26 LDIINSLVTTVFMLIVSVLALIPETT--TLTVGGGVFALVTAVCCLADGALIYRKLLFN 82
>gi|7705887 hypothetical protein LOC51161 [Homo sapiens]
Length = 162
Score = 29.6 bits (65), Expect = 0.58
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 10 SSEAPSGN-LKQPETAAALASSGSVDLTNSIITAVFLSVVAILAMQEKKR 58
S EA + N + P+ A A G++ L+ IIT + L+V +L +++KKR
Sbjct: 38 SPEATTFNDTRIPDAAGGTAGVGTMLLSFGIITVIGLAVALVLYIRKKKR 87
>gi|195972903 zinc finger protein 385A isoform a [Homo sapiens]
Length = 386
Score = 28.9 bits (63), Expect = 1.00
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 54 QEKKRRHLLYVGGSLCLTAV-IVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPE 112
+E+K + LLY +LC AV + ++A TK +T L E L P K AYP
Sbjct: 193 EEEKAKRLLYC--ALCKVAVNSLSQLEAHNKGTKHKTIL------EARSGLGPIK-AYPR 243
Query: 113 TGPDAPQRP 121
GP P P
Sbjct: 244 LGPPTPGEP 252
>gi|24308079 zinc finger protein 385A isoform c [Homo sapiens]
Length = 366
Score = 28.9 bits (63), Expect = 1.00
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 54 QEKKRRHLLYVGGSLCLTAV-IVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPE 112
+E+K + LLY +LC AV + ++A TK +T L E L P K AYP
Sbjct: 173 EEEKAKRLLYC--ALCKVAVNSLSQLEAHNKGTKHKTIL------EARSGLGPIK-AYPR 223
Query: 113 TGPDAPQRP 121
GP P P
Sbjct: 224 LGPPTPGEP 232
>gi|93141024 chemokine-like factor isoform e [Homo sapiens]
Length = 113
Score = 28.5 bits (62), Expect = 1.3
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 33 VDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSL 68
+D+ NS++T VF+ +V++LA+ + L VGG L
Sbjct: 79 LDIINSLVTTVFMLIVSVLALIPETT--TLTVGGGL 112
>gi|134053883 intestinal facilitative glucose transporter 7 [Homo
sapiens]
Length = 512
Score = 26.6 bits (57), Expect = 4.9
Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 23 TAAALASSGSVDLT-NSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAVIVCCI 78
T+A + ++ S +T S + + +++ + + ++ RRHLL G +C +A +V +
Sbjct: 311 TSAGVEAAHSQYVTVGSGVVNIVMTITSAVLVERLGRRHLLLAGYGICGSACLVLTV 367
>gi|33469919 minichromosome maintenance complex component 4 [Homo
sapiens]
Length = 863
Score = 26.2 bits (56), Expect = 6.5
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 53 MQEKKRRHLLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLKRFLGVEVERK-LSPAK 107
M++ + R L+ G+L L+ +CCID F KM + + L +E++ LS AK
Sbjct: 548 MKDPETRQLVLQTGALVLSDNGICCIDEF---DKMNESTRSVLHEVMEQQTLSIAK 600
>gi|33469917 minichromosome maintenance complex component 4 [Homo
sapiens]
Length = 863
Score = 26.2 bits (56), Expect = 6.5
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 53 MQEKKRRHLLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLKRFLGVEVERK-LSPAK 107
M++ + R L+ G+L L+ +CCID F KM + + L +E++ LS AK
Sbjct: 548 MKDPETRQLVLQTGALVLSDNGICCIDEF---DKMNESTRSVLHEVMEQQTLSIAK 600
>gi|92110055 histidine decarboxylase [Homo sapiens]
Length = 662
Score = 25.8 bits (55), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 91 LKRFLGVEVERKLSPAKDAYPETGPDA 117
+KR G+ +E L P D + E PDA
Sbjct: 534 MKRENGLHLETLLDPVDDCFSEEAPDA 560
>gi|169160859 PREDICTED: similar to actin, gamma 1 [Homo sapiens]
Length = 152
Score = 25.8 bits (55), Expect = 8.4
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 24 AAALASSGSV---DLTNSI---ITAVFLSVVAILAMQEKKRRHLLYVGGSL 68
A + SSG+ D+TN + ITA+ S + I + ++R++ +++GGS+
Sbjct: 72 ANTVLSSGTTMYPDITNRMQKAITALAPSTMKIKIIAPRERKYSVWIGGSI 122
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,808,692
Number of Sequences: 37866
Number of extensions: 166326
Number of successful extensions: 627
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 23
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.