Search of human proteins with 30410846

Search of human proteins with 30410846

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|30410846 APG4 autophagy 4 homolog C isoform 8 [Homo sapiens]
         (458 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|30410846 APG4 autophagy 4 homolog C isoform 8 [Homo sapiens]       947   0.0  
gi|30410844 APG4 autophagy 4 homolog C isoform 7 [Homo sapiens]       947   0.0  
gi|27903825 APG4 autophagy 4 homolog D [Homo sapiens]                 409   e-114
gi|30795252 autophagy-related cysteine endopeptidase 2 isoform a...   180   3e-45
gi|30410798 APG4 autophagy 4 homolog B isoform b [Homo sapiens]       161   1e-39
gi|47132611 APG4 autophagy 4 homolog B isoform a [Homo sapiens]       161   1e-39
gi|30795248 autophagy-related cysteine endopeptidase 2 isoform b...   133   3e-31
gi|4503943 glutaryl-Coenzyme A dehydrogenase isoform a precursor...    32   0.92 
gi|7669494 glutaryl-Coenzyme A dehydrogenase isoform b precursor...    32   0.92 
gi|34101286 zinc finger RNA binding protein [Homo sapiens]             30   6.0  
gi|29171753 PTPRF interacting protein alpha 1 isoform a [Homo sa...    29   7.8  
gi|4505983 PTPRF interacting protein alpha 1 isoform b [Homo sap...    29   7.8  

>gi|30410846 APG4 autophagy 4 homolog C isoform 8 [Homo sapiens]
          Length = 458

 Score =  947 bits (2448), Expect = 0.0
 Identities = 458/458 (100%), Positives = 458/458 (100%)

Query: 1   MEATGTDEVDKLKTKFISAWNNMKYSWVLKTKTYFSRNSPVLLLGKCYHFKYEDEDKTLP 60
           MEATGTDEVDKLKTKFISAWNNMKYSWVLKTKTYFSRNSPVLLLGKCYHFKYEDEDKTLP
Sbjct: 1   MEATGTDEVDKLKTKFISAWNNMKYSWVLKTKTYFSRNSPVLLLGKCYHFKYEDEDKTLP 60

Query: 61  AESGCTIEDHVIAGNVEEFRKDFISRIWLTYREEFPQIEGSALTTDCGWGCTLRTGQMLL 120
           AESGCTIEDHVIAGNVEEFRKDFISRIWLTYREEFPQIEGSALTTDCGWGCTLRTGQMLL
Sbjct: 61  AESGCTIEDHVIAGNVEEFRKDFISRIWLTYREEFPQIEGSALTTDCGWGCTLRTGQMLL 120

Query: 121 AQGLILHFLGRAWTWPDALNIENSDSESWTSHTVKKFTASFEASLSGEREFKTPTISLKE 180
           AQGLILHFLGRAWTWPDALNIENSDSESWTSHTVKKFTASFEASLSGEREFKTPTISLKE
Sbjct: 121 AQGLILHFLGRAWTWPDALNIENSDSESWTSHTVKKFTASFEASLSGEREFKTPTISLKE 180

Query: 181 TIGKYSDDHEMRNEVYHRKIISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGPAVVAHI 240
           TIGKYSDDHEMRNEVYHRKIISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGPAVVAHI
Sbjct: 181 TIGKYSDDHEMRNEVYHRKIISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGPAVVAHI 240

Query: 241 LRKAVEEARHPDLQGITIYVAQDCTVYNSDVIDKQSASMTSDNADDKAVIILVPVRLGGE 300
           LRKAVEEARHPDLQGITIYVAQDCTVYNSDVIDKQSASMTSDNADDKAVIILVPVRLGGE
Sbjct: 241 LRKAVEEARHPDLQGITIYVAQDCTVYNSDVIDKQSASMTSDNADDKAVIILVPVRLGGE 300

Query: 301 RTNTDYLEFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDF 360
           RTNTDYLEFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDF
Sbjct: 301 RTNTDYLEFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDF 360

Query: 361 PLETFHCPSPKKMSFRKMDPSCTIGFYCRNVQDFKRASEEITKMLKFSSKEKYPLFTFVN 420
           PLETFHCPSPKKMSFRKMDPSCTIGFYCRNVQDFKRASEEITKMLKFSSKEKYPLFTFVN
Sbjct: 361 PLETFHCPSPKKMSFRKMDPSCTIGFYCRNVQDFKRASEEITKMLKFSSKEKYPLFTFVN 420

Query: 421 GHSRDYDFTSTTTNEEDLFSEDEKKQLKRFSTEEFVLL 458
           GHSRDYDFTSTTTNEEDLFSEDEKKQLKRFSTEEFVLL
Sbjct: 421 GHSRDYDFTSTTTNEEDLFSEDEKKQLKRFSTEEFVLL 458


>gi|30410844 APG4 autophagy 4 homolog C isoform 7 [Homo sapiens]
          Length = 458

 Score =  947 bits (2448), Expect = 0.0
 Identities = 458/458 (100%), Positives = 458/458 (100%)

Query: 1   MEATGTDEVDKLKTKFISAWNNMKYSWVLKTKTYFSRNSPVLLLGKCYHFKYEDEDKTLP 60
           MEATGTDEVDKLKTKFISAWNNMKYSWVLKTKTYFSRNSPVLLLGKCYHFKYEDEDKTLP
Sbjct: 1   MEATGTDEVDKLKTKFISAWNNMKYSWVLKTKTYFSRNSPVLLLGKCYHFKYEDEDKTLP 60

Query: 61  AESGCTIEDHVIAGNVEEFRKDFISRIWLTYREEFPQIEGSALTTDCGWGCTLRTGQMLL 120
           AESGCTIEDHVIAGNVEEFRKDFISRIWLTYREEFPQIEGSALTTDCGWGCTLRTGQMLL
Sbjct: 61  AESGCTIEDHVIAGNVEEFRKDFISRIWLTYREEFPQIEGSALTTDCGWGCTLRTGQMLL 120

Query: 121 AQGLILHFLGRAWTWPDALNIENSDSESWTSHTVKKFTASFEASLSGEREFKTPTISLKE 180
           AQGLILHFLGRAWTWPDALNIENSDSESWTSHTVKKFTASFEASLSGEREFKTPTISLKE
Sbjct: 121 AQGLILHFLGRAWTWPDALNIENSDSESWTSHTVKKFTASFEASLSGEREFKTPTISLKE 180

Query: 181 TIGKYSDDHEMRNEVYHRKIISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGPAVVAHI 240
           TIGKYSDDHEMRNEVYHRKIISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGPAVVAHI
Sbjct: 181 TIGKYSDDHEMRNEVYHRKIISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGPAVVAHI 240

Query: 241 LRKAVEEARHPDLQGITIYVAQDCTVYNSDVIDKQSASMTSDNADDKAVIILVPVRLGGE 300
           LRKAVEEARHPDLQGITIYVAQDCTVYNSDVIDKQSASMTSDNADDKAVIILVPVRLGGE
Sbjct: 241 LRKAVEEARHPDLQGITIYVAQDCTVYNSDVIDKQSASMTSDNADDKAVIILVPVRLGGE 300

Query: 301 RTNTDYLEFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDF 360
           RTNTDYLEFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDF
Sbjct: 301 RTNTDYLEFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDF 360

Query: 361 PLETFHCPSPKKMSFRKMDPSCTIGFYCRNVQDFKRASEEITKMLKFSSKEKYPLFTFVN 420
           PLETFHCPSPKKMSFRKMDPSCTIGFYCRNVQDFKRASEEITKMLKFSSKEKYPLFTFVN
Sbjct: 361 PLETFHCPSPKKMSFRKMDPSCTIGFYCRNVQDFKRASEEITKMLKFSSKEKYPLFTFVN 420

Query: 421 GHSRDYDFTSTTTNEEDLFSEDEKKQLKRFSTEEFVLL 458
           GHSRDYDFTSTTTNEEDLFSEDEKKQLKRFSTEEFVLL
Sbjct: 421 GHSRDYDFTSTTTNEEDLFSEDEKKQLKRFSTEEFVLL 458


>gi|27903825 APG4 autophagy 4 homolog D [Homo sapiens]
          Length = 474

 Score =  409 bits (1052), Expect = e-114
 Identities = 212/464 (45%), Positives = 289/464 (62%), Gaps = 61/464 (13%)

Query: 7   DEVDKLKTKFISAWNNMKYSWVLKTKTYFSRNSPVLLLGKCYHFKYEDEDKTLPAESGCT 66
           DEVDK K KF++AWNN+KY WV+K++T FS+ S + L G+ Y F+ E             
Sbjct: 60  DEVDKFKAKFLTAWNNVKYGWVVKSRTSFSKISSIHLCGRRYRFEGE------------- 106

Query: 67  IEDHVIAGNVEEFRKDFISRIWLTYREEFPQIEGSALTTDCGWGCTLRTGQMLLAQGLIL 126
                  G+++ F++DF+SR+WLTYR +FP + G  LT+DCGWGC LR+GQM+LAQGL+L
Sbjct: 107 -------GDIQRFQRDFVSRLWLTYRRDFPPLPGGCLTSDCGWGCMLRSGQMMLAQGLLL 159

Query: 127 HFLGRAWTWPDALNIENSDSESWTSHTVKKFTASFEASLSGEREFKTPTISLKETIGKYS 186
           HFL R WTW + + +   +     S           +   G   +  P  +         
Sbjct: 160 HFLPRDWTWAEGMGLGPPELSGSAS----------PSRYHGPARWMPPRWA--------Q 201

Query: 187 DDHEMRNEVYHRKIISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGPAVVAHILRKAVE 246
              E+  E  HR+I+SWF D P A FGLH+L+E G+ SGKKAGDWYGP++VAHILRKAVE
Sbjct: 202 GAPELEQERRHRQIVSWFADHPRAPFGLHRLVELGQSSGKKAGDWYGPSLVAHILRKAVE 261

Query: 247 EARHPDLQGITIYVAQDCTVYNSDVIDKQSASMTSDNADDKAVIILVPVRLGGERTNTDY 306
                D+  + +YV+QDCTVY +DV   +  +     A+ K+V+ILVPVRLGGE  N  Y
Sbjct: 262 SCS--DVTRLVVYVSQDCTVYKADVA--RLVARPDPTAEWKSVVILVPVRLGGETLNPVY 317

Query: 307 LEFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDFPLETFH 366
           +  VK +L  E C+GI+GGKP+ S YF G+QDD L+Y+DPHYCQ  VDVS  DFPLE+FH
Sbjct: 318 VPCVKELLRCELCLGIMGGKPRHSLYFIGYQDDFLLYLDPHYCQPTVDVSQADFPLESFH 377

Query: 367 CPSPKKMSFRKMDPSCTIGFYCRNVQDFKRASEEITKMLKFSS-KEKYPLFTFVNGHSRD 425
           C SP+KM+F KMDPSCT+GFY  + ++F+    E+T++L  SS  E+YP+FT   GH++D
Sbjct: 378 CTSPRKMAFAKMDPSCTVGFYAGDRKEFETLCSELTRVLSSSSATERYPMFTLAEGHAQD 437

Query: 426 YDFTSTTTNEEDLFSEDEKKQL-----------KRFSTEEFVLL 458
           +         +DL S+  +  L           KR S+E+FV L
Sbjct: 438 HSL-------DDLCSQLAQPTLRLPRTGRLLRAKRPSSEDFVFL 474


>gi|30795252 autophagy-related cysteine endopeptidase 2 isoform a
           [Homo sapiens]
          Length = 398

 Score =  180 bits (456), Expect = 3e-45
 Identities = 123/422 (29%), Positives = 191/422 (45%), Gaps = 99/422 (23%)

Query: 68  EDHVIAGNVEEFRKDFISRIWLTYREEFPQIEGSALTTDCGWGCTLRTGQMLLAQGLILH 127
           + H++     +   D  +R+W TYR +F  I G+  ++D GWGC LR GQM+LAQ LI  
Sbjct: 34  KQHLLKTEKSKLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICR 93

Query: 128 FLGRAWTWPDALNIENSDSESWTSHTVKKFTASFEASLSGEREFKTPTISLKETIGKYSD 187
            LGR W+W                                E++ + P    KE       
Sbjct: 94  HLGRDWSW--------------------------------EKQKEQP----KE------- 110

Query: 188 DHEMRNEVYHRKIISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGPAVVAHILRKAVEE 247
                    +++I+  F D     + +HQ+ + G   GK  G+W+GP  VA +L+K    
Sbjct: 111 ---------YQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKL--- 158

Query: 248 ARHPDLQGITIYVAQDCTVYNSDVI--------------DKQSASMTSDNADD------- 286
           A   +   + +YV+ D TV   D+               D+   S+T+ N          
Sbjct: 159 ALFDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCS 218

Query: 287 --KAVIILVPVRLGGERTNTDYLEFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIYM 344
             K ++++VP+RLG  + N  Y++  K    +   +G +GGKP  +YYF GF  D LI++
Sbjct: 219 AWKPLLLIVPLRLGINQINPVYVDAFKECFKMPQSLGALGGKPNNAYYFIGFLGDELIFL 278

Query: 345 DPHYCQSFVDV----SIKDFPLETFHC-PSPKKMSFRKMDPSCTIGFYCRNVQDFKRASE 399
           DPH  Q+FVD     ++ D   +TFHC  SP++M+   +DPS  +GF+C+  +DF     
Sbjct: 279 DPHTTQTFVDTEENGTVND---QTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCS 335

Query: 400 EITKMLKFSSKEKYPLFTFVNGHSRDY-DFTS------TTTNEEDLFSEDEKKQLKRFST 452
            + K +    KE   +F  V  H   +  F        TTT  E +   D  +QL+ F  
Sbjct: 336 LVQKEI---LKENLRMFELVQKHPSHWPPFVPPAKPEVTTTGAEFI---DSTEQLEEFDL 389

Query: 453 EE 454
           EE
Sbjct: 390 EE 391


>gi|30410798 APG4 autophagy 4 homolog B isoform b [Homo sapiens]
          Length = 380

 Score =  161 bits (408), Expect = 1e-39
 Identities = 101/355 (28%), Positives = 158/355 (44%), Gaps = 82/355 (23%)

Query: 77  EEFRKDFISRIWLTYREEFPQIEGSALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWP 136
           +E   D  SR+W TYR+ FP I G+  T+D GWGC LR GQM+ AQ L+   LGR W   
Sbjct: 40  DEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWR-- 97

Query: 137 DALNIENSDSESWTSHTVKKFTASFEASLSGEREFKTPTISLKETIGKYSDDHEMRNEVY 196
                       WT                                         R    
Sbjct: 98  ------------WTQRK--------------------------------------RQPDS 107

Query: 197 HRKIISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLQGI 256
           +  +++ F D   + + +HQ+ + G   GK  G WYGP  VA +L+K    A       +
Sbjct: 108 YFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKL---AVFDTWSSL 164

Query: 257 TIYVAQDCTVYNSDV-------------------IDKQ------SASMTSDNADDKAVII 291
            +++A D TV   ++                    D+        A +T+  +  + +++
Sbjct: 165 AVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVL 224

Query: 292 LVPVRLGGERTNTDYLEFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQS 351
           L+P+RLG    N  Y+E +K    +   +G+IGGKP  ++YF G+  + LIY+DPH  Q 
Sbjct: 225 LIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQP 284

Query: 352 FVDVSIKDF-PLETFHCPSPK-KMSFRKMDPSCTIGFYCRNVQDFKRASEEITKM 404
            V+ +   F P E+FHC  P  +MS  ++DPS  +GF+C+   DF    +++ K+
Sbjct: 285 AVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKL 339


>gi|47132611 APG4 autophagy 4 homolog B isoform a [Homo sapiens]
          Length = 393

 Score =  161 bits (408), Expect = 1e-39
 Identities = 101/355 (28%), Positives = 158/355 (44%), Gaps = 82/355 (23%)

Query: 77  EEFRKDFISRIWLTYREEFPQIEGSALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWP 136
           +E   D  SR+W TYR+ FP I G+  T+D GWGC LR GQM+ AQ L+   LGR W   
Sbjct: 40  DEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWR-- 97

Query: 137 DALNIENSDSESWTSHTVKKFTASFEASLSGEREFKTPTISLKETIGKYSDDHEMRNEVY 196
                       WT                                         R    
Sbjct: 98  ------------WTQRK--------------------------------------RQPDS 107

Query: 197 HRKIISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLQGI 256
           +  +++ F D   + + +HQ+ + G   GK  G WYGP  VA +L+K    A       +
Sbjct: 108 YFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKL---AVFDTWSSL 164

Query: 257 TIYVAQDCTVYNSDV-------------------IDKQ------SASMTSDNADDKAVII 291
            +++A D TV   ++                    D+        A +T+  +  + +++
Sbjct: 165 AVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVL 224

Query: 292 LVPVRLGGERTNTDYLEFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQS 351
           L+P+RLG    N  Y+E +K    +   +G+IGGKP  ++YF G+  + LIY+DPH  Q 
Sbjct: 225 LIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQP 284

Query: 352 FVDVSIKDF-PLETFHCPSPK-KMSFRKMDPSCTIGFYCRNVQDFKRASEEITKM 404
            V+ +   F P E+FHC  P  +MS  ++DPS  +GF+C+   DF    +++ K+
Sbjct: 285 AVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKL 339


>gi|30795248 autophagy-related cysteine endopeptidase 2 isoform b
           [Homo sapiens]
          Length = 336

 Score =  133 bits (335), Expect = 3e-31
 Identities = 108/399 (27%), Positives = 165/399 (41%), Gaps = 115/399 (28%)

Query: 68  EDHVIAGNVEEFRKDFISRIWLTYREEFPQIEGSALTTDCGWGCTLRTGQMLLAQGLILH 127
           + H++     +   D  +R+W TYR +F  I G+  ++D GWGC LR GQM+LAQ LI  
Sbjct: 34  KQHLLKTEKSKLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICR 93

Query: 128 FLGRAWTWPDALNIENSDSESWTSHTVKKFTASFEASLSGEREFKTPTISLKETIGKYSD 187
            LGR W+W                                E++ + P    KE       
Sbjct: 94  HLGRDWSW--------------------------------EKQKEQP----KE------- 110

Query: 188 DHEMRNEVYHRKIISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGPAVVAHILRKAVEE 247
                    +++I+  F D     + +HQ+ + G   GK  G+W+GP  VA +L+K    
Sbjct: 111 ---------YQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKL--- 158

Query: 248 ARHPDLQGITIYVAQDCTVYNSDVIDKQSASMTSDNADDKAVIILVPVRLGGERTNTDYL 307
           A   +   + +YV+ D TV   D+  K+   +   +AD                      
Sbjct: 159 ALFDEWNSLAVYVSMDNTVVIEDI--KKMCRVLPLSAD---------------------- 194

Query: 308 EFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDV----SIKDFPLE 363
                           G +P  S   A  Q D LI++DPH  Q+FVD     ++ D   +
Sbjct: 195 --------------TAGDRPPDS-LTASNQSDELIFLDPHTTQTFVDTEENGTVND---Q 236

Query: 364 TFHC-PSPKKMSFRKMDPSCTIGFYCRNVQDFKRASEEITKMLKFSSKEKYPLFTFVNGH 422
           TFHC  SP++M+   +DPS  +GF+C+  +DF      + K +    KE   +F  V  H
Sbjct: 237 TFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCSLVQKEI---LKENLRMFELVQKH 293

Query: 423 SRDY-DFTS------TTTNEEDLFSEDEKKQLKRFSTEE 454
              +  F        TTT  E +   D  +QL+ F  EE
Sbjct: 294 PSHWPPFVPPAKPEVTTTGAEFI---DSTEQLEEFDLEE 329


>gi|4503943 glutaryl-Coenzyme A dehydrogenase isoform a precursor
           [Homo sapiens]
          Length = 438

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 119 LLAQGLILHFLGRAWTWPDALNIENSDSESWTSHTVKKFTASFEASLSGEREFKTPTISL 178
           LL++G  LH L R W    A   +   ++S  + + +     ++  L  E +  T  I +
Sbjct: 10  LLSRGPGLHVL-RTWVSSAAQTEKGGRTQSQLAKSSRP-EFDWQDPLVLEEQLTTDEILI 67

Query: 179 KETIGKYSDDHEM-------RNEVYHRKIISWFGD 206
           ++T   Y  +  M       RNEV+HR+IIS  G+
Sbjct: 68  RDTFRTYCQERLMPRILLANRNEVFHREIISEMGE 102


>gi|7669494 glutaryl-Coenzyme A dehydrogenase isoform b precursor
           [Homo sapiens]
          Length = 428

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 119 LLAQGLILHFLGRAWTWPDALNIENSDSESWTSHTVKKFTASFEASLSGEREFKTPTISL 178
           LL++G  LH L R W    A   +   ++S  + + +     ++  L  E +  T  I +
Sbjct: 10  LLSRGPGLHVL-RTWVSSAAQTEKGGRTQSQLAKSSRP-EFDWQDPLVLEEQLTTDEILI 67

Query: 179 KETIGKYSDDHEM-------RNEVYHRKIISWFGD 206
           ++T   Y  +  M       RNEV+HR+IIS  G+
Sbjct: 68  RDTFRTYCQERLMPRILLANRNEVFHREIISEMGE 102


>gi|34101286 zinc finger RNA binding protein [Homo sapiens]
          Length = 1074

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 234 PAVVAHILRKAVEEARHPDLQGITIYVAQDCTVYNSDVIDKQSASMTSD-----NADDKA 288
           P VV+         A  P     +I  A +CTV  S V       +T+      N+    
Sbjct: 425 PNVVSQATSSTAVSASKPTASPSSI-AANNCTVNTSSVATSSMKGLTTTGNSSLNSTSNT 483

Query: 289 VIILVPVRLGGERTNTDYLEFVKG 312
            +  VP  +  ++T+T  + FV G
Sbjct: 484 KVSAVPTNMAAKKTSTPKINFVGG 507


>gi|29171753 PTPRF interacting protein alpha 1 isoform a [Homo
           sapiens]
          Length = 1185

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 2/97 (2%)

Query: 143 NSDSESWTSHTVKKFTASFEASLSGEREFKTPTISLKETIGK--YSDDHEMRNEVYHRKI 200
           NS  +S      KK   S    L G++E   P  + KE +G+   S+      +      
Sbjct: 788 NSSQDSLHKAPKKKGIKSSIGRLFGKKEKGRPGQTGKEALGQAGVSETDNSSQDALGLSK 847

Query: 201 ISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGPAVV 237
           +    +    L   H+L+E  ++ G     W GP VV
Sbjct: 848 LGGQAEKNRKLQKKHELLEEARRQGLPFAQWDGPTVV 884


>gi|4505983 PTPRF interacting protein alpha 1 isoform b [Homo
           sapiens]
          Length = 1202

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 2/97 (2%)

Query: 143 NSDSESWTSHTVKKFTASFEASLSGEREFKTPTISLKETIGK--YSDDHEMRNEVYHRKI 200
           NS  +S      KK   S    L G++E   P  + KE +G+   S+      +      
Sbjct: 788 NSSQDSLHKAPKKKGIKSSIGRLFGKKEKGRPGQTGKEALGQAGVSETDNSSQDALGLSK 847

Query: 201 ISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGPAVV 237
           +    +    L   H+L+E  ++ G     W GP VV
Sbjct: 848 LGGQAEKNRKLQKKHELLEEARRQGLPFAQWDGPTVV 884


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,339,447
Number of Sequences: 37866
Number of extensions: 757608
Number of successful extensions: 1474
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1450
Number of HSP's gapped (non-prelim): 20
length of query: 458
length of database: 18,247,518
effective HSP length: 106
effective length of query: 352
effective length of database: 14,233,722
effective search space: 5010270144
effective search space used: 5010270144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.