Search of human proteins with 30410798

Search of human proteins with 30410798

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|30410798 APG4 autophagy 4 homolog B isoform b [Homo sapiens]
         (380 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|30410798 APG4 autophagy 4 homolog B isoform b [Homo sapiens]       799   0.0  
gi|47132611 APG4 autophagy 4 homolog B isoform a [Homo sapiens]       779   0.0  
gi|30795252 autophagy-related cysteine endopeptidase 2 isoform a...   430   e-120
gi|30795248 autophagy-related cysteine endopeptidase 2 isoform b...   273   1e-73
gi|27903825 APG4 autophagy 4 homolog D [Homo sapiens]                 192   4e-49
gi|30410846 APG4 autophagy 4 homolog C isoform 8 [Homo sapiens]       161   8e-40
gi|30410844 APG4 autophagy 4 homolog C isoform 7 [Homo sapiens]       161   8e-40
gi|157951704 Fanconi anemia core complex 100 kDa subunit isoform...    31   2.1  
gi|157951702 Fanconi anemia core complex 100 kDa subunit isoform...    31   2.1  
gi|21361682 Tax1 (human T-cell leukemia virus type I) binding pr...    30   2.8  
gi|7706322 homeobox prox 1 [Homo sapiens]                              29   8.0  
gi|221316634 LIM domain only 7 isoform 2 [Homo sapiens]                29   8.0  

>gi|30410798 APG4 autophagy 4 homolog B isoform b [Homo sapiens]
          Length = 380

 Score =  799 bits (2063), Expect = 0.0
 Identities = 380/380 (100%), Positives = 380/380 (100%)

Query: 1   MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKNFPA 60
           MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKNFPA
Sbjct: 1   MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKNFPA 60

Query: 61  IGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKD 120
           IGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKD
Sbjct: 61  IGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKD 120

Query: 121 SYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIR 180
           SYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIR
Sbjct: 121 SYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIR 180

Query: 181 RLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYV 240
           RLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYV
Sbjct: 181 RLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYV 240

Query: 241 ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFH 300
           ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFH
Sbjct: 241 ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFH 300

Query: 301 CQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVELQPSHLA 360
           CQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVELQPSHLA
Sbjct: 301 CQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVELQPSHLA 360

Query: 361 CPDVLNLSLGESCQVQILLM 380
           CPDVLNLSLGESCQVQILLM
Sbjct: 361 CPDVLNLSLGESCQVQILLM 380


>gi|47132611 APG4 autophagy 4 homolog B isoform a [Homo sapiens]
          Length = 393

 Score =  779 bits (2011), Expect = 0.0
 Identities = 370/372 (99%), Positives = 370/372 (99%)

Query: 1   MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKNFPA 60
           MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKNFPA
Sbjct: 1   MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKNFPA 60

Query: 61  IGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKD 120
           IGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKD
Sbjct: 61  IGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKD 120

Query: 121 SYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIR 180
           SYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIR
Sbjct: 121 SYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIR 180

Query: 181 RLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYV 240
           RLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYV
Sbjct: 181 RLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYV 240

Query: 241 ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFH 300
           ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFH
Sbjct: 241 ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFH 300

Query: 301 CQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVELQPSHLA 360
           CQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVELQPSHLA
Sbjct: 301 CQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVELQPSHLA 360

Query: 361 CPDVLNLSLGES 372
           CPDVLNLSL  S
Sbjct: 361 CPDVLNLSLDSS 372


>gi|30795252 autophagy-related cysteine endopeptidase 2 isoform a
           [Homo sapiens]
          Length = 398

 Score =  430 bits (1105), Expect = e-120
 Identities = 199/345 (57%), Positives = 262/345 (75%), Gaps = 9/345 (2%)

Query: 17  EDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCML 76
           E++P+T E VWILG+++ + TEK ++LSD+++RLWFTYR+ F  IGGTGP+SD GWGCML
Sbjct: 20  EEYPDTDELVWILGKQHLLKTEKSKLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCML 79

Query: 77  RCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEG 136
           RCGQM+ AQAL+CRHLGRDW W ++K QP  Y  +L  F+DRKD  YSIHQ+AQMGVGEG
Sbjct: 80  RCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEG 139

Query: 137 KSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFP 196
           KSIG+W+GPNTVAQVLKKLA+FD W+SLAV+++MDNTVV+E+I+++CR  +P +  TA  
Sbjct: 140 KSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRV-LPLSADTA-- 196

Query: 197 ADSDRHCNGFPAGAEVTNRP---SPWRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSL 253
              DR  +   A  +        S W+PL+L++PLRLG+  IN  YV+  K CF MPQSL
Sbjct: 197 --GDRPPDSLTASNQSKGTSAYCSAWKPLLLIVPLRLGINQINPVYVDAFKECFKMPQSL 254

Query: 254 GVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFHCQHPPCRMSIAEL 313
           G +GGKPN+A+YFIG++G+ELI+LDPHTTQ  V+  +   + D++FHC   P RM+I  L
Sbjct: 255 GALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEENGTVNDQTFHCLQSPQRMNILNL 314

Query: 314 DPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVELQPSH 358
           DPS+A+GFFCK E DF++WC  V+K  +L   L MFELV+  PSH
Sbjct: 315 DPSVALGFFCKEEKDFDNWCSLVQK-EILKENLRMFELVQKHPSH 358


>gi|30795248 autophagy-related cysteine endopeptidase 2 isoform b
           [Homo sapiens]
          Length = 336

 Score =  273 bits (699), Expect = 1e-73
 Identities = 147/345 (42%), Positives = 199/345 (57%), Gaps = 71/345 (20%)

Query: 17  EDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCML 76
           E++P+T E VWILG+++ + TEK ++LSD+++RLWFTYR+ F  IGGTGP+SD GWGCML
Sbjct: 20  EEYPDTDELVWILGKQHLLKTEKSKLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCML 79

Query: 77  RCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEG 136
           RCGQM+ AQAL+CRHLGRDW W ++K QP  Y  +L  F+DRKD  YSIHQ+AQMGVGEG
Sbjct: 80  RCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEG 139

Query: 137 KSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFP 196
           KSIG+W+GPNTVAQVLKKLA+FD W+SLAV+++MDNTVV+E+I+++CR           P
Sbjct: 140 KSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCR---------VLP 190

Query: 197 ADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGL---TDINEAYVETLKHCFMMPQSL 253
             +D   +  P     +N+      L+ L P        T+ N    +   HC   PQ +
Sbjct: 191 LSADTAGDRPPDSLTASNQSD---ELIFLDPHTTQTFVDTEENGTVNDQTFHCLQSPQRM 247

Query: 254 GVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFHCQHPPCRMSIAEL 313
            ++   P+ A   +G+  +E                                        
Sbjct: 248 NILNLDPSVA---LGFFCKE---------------------------------------- 264

Query: 314 DPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVELQPSH 358
                       E DF++WC  V+K  +L   L MFELV+  PSH
Sbjct: 265 ------------EKDFDNWCSLVQK-EILKENLRMFELVQKHPSH 296


>gi|27903825 APG4 autophagy 4 homolog D [Homo sapiens]
          Length = 474

 Score =  192 bits (488), Expect = 4e-49
 Identities = 118/368 (32%), Positives = 171/368 (46%), Gaps = 69/368 (18%)

Query: 26  VWILGRKYSIFTEKD--EILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIF 83
           + + GR+Y    E D      D  SRLW TYR++FP + G   TSD GWGCMLR GQM+ 
Sbjct: 94  IHLCGRRYRFEGEGDIQRFQRDFVSRLWLTYRRDFPPLPGGCLTSDCGWGCMLRSGQMML 153

Query: 84  AQALVCRHLGRDWRWTQR----------KRQPDSYFS----------------------- 110
           AQ L+   L RDW W +              P  Y                         
Sbjct: 154 AQGLLLHFLPRDWTWAEGMGLGPPELSGSASPSRYHGPARWMPPRWAQGAPELEQERRHR 213

Query: 111 -VLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKK-LAVFDTWSSLAVHI 168
            +++ F D   + + +H++ ++G   GK  G WYGP+ VA +L+K +      + L V++
Sbjct: 214 QIVSWFADHPRAPFGLHRLVELGQSSGKKAGDWYGPSLVAHILRKAVESCSDVTRLVVYV 273

Query: 169 AMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPL 228
           + D TV   ++ RL     P A                            W+ +V+L+P+
Sbjct: 274 SQDCTVYKADVARLVARPDPTA---------------------------EWKSVVILVPV 306

Query: 229 RLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEP 288
           RLG   +N  YV  +K        LG++GGKP  + YFIGY  + L+YLDPH  QP V+ 
Sbjct: 307 RLGGETLNPVYVPCVKELLRCELCLGIMGGKPRHSLYFIGYQDDFLLYLDPHYCQPTVDV 366

Query: 289 TDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGA--- 345
           +   F P ESFHC  P  +M+ A++DPS  VGF+     +F   C ++ ++     A   
Sbjct: 367 SQADF-PLESFHCTSPR-KMAFAKMDPSCTVGFYAGDRKEFETLCSELTRVLSSSSATER 424

Query: 346 LPMFELVE 353
            PMF L E
Sbjct: 425 YPMFTLAE 432


>gi|30410846 APG4 autophagy 4 homolog C isoform 8 [Homo sapiens]
          Length = 458

 Score =  161 bits (408), Expect = 8e-40
 Identities = 101/355 (28%), Positives = 158/355 (44%), Gaps = 82/355 (23%)

Query: 40  DEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWR-- 97
           +E   D  SR+W TYR+ FP I G+  T+D GWGC LR GQM+ AQ L+   LGR W   
Sbjct: 77  EEFRKDFISRIWLTYREEFPQIEGSALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWP 136

Query: 98  ------------WTQRK--------------------------------------RQPDS 107
                       WT                                         R    
Sbjct: 137 DALNIENSDSESWTSHTVKKFTASFEASLSGEREFKTPTISLKETIGKYSDDHEMRNEVY 196

Query: 108 YFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKL---AVFDTWSSL 164
           +  +++ F D   + + +HQ+ + G   GK  G WYGP  VA +L+K    A       +
Sbjct: 197 HRKIISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLQGI 256

Query: 165 AVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVL 224
            +++A D TV   ++                    D+        A +T+  +  + +++
Sbjct: 257 TIYVAQDCTVYNSDV-------------------IDKQ------SASMTSDNADDKAVII 291

Query: 225 LIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQP 284
           L+P+RLG    N  Y+E +K    +   +G+IGGKP  ++YF G+  + LIY+DPH  Q 
Sbjct: 292 LVPVRLGGERTNTDYLEFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQS 351

Query: 285 AVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKL 339
            V+ +   F P E+FHC  P  +MS  ++DPS  +GF+C+   DF    +++ K+
Sbjct: 352 FVDVSIKDF-PLETFHCPSPK-KMSFRKMDPSCTIGFYCRNVQDFKRASEEITKM 404


>gi|30410844 APG4 autophagy 4 homolog C isoform 7 [Homo sapiens]
          Length = 458

 Score =  161 bits (408), Expect = 8e-40
 Identities = 101/355 (28%), Positives = 158/355 (44%), Gaps = 82/355 (23%)

Query: 40  DEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWR-- 97
           +E   D  SR+W TYR+ FP I G+  T+D GWGC LR GQM+ AQ L+   LGR W   
Sbjct: 77  EEFRKDFISRIWLTYREEFPQIEGSALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWP 136

Query: 98  ------------WTQRK--------------------------------------RQPDS 107
                       WT                                         R    
Sbjct: 137 DALNIENSDSESWTSHTVKKFTASFEASLSGEREFKTPTISLKETIGKYSDDHEMRNEVY 196

Query: 108 YFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKL---AVFDTWSSL 164
           +  +++ F D   + + +HQ+ + G   GK  G WYGP  VA +L+K    A       +
Sbjct: 197 HRKIISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLQGI 256

Query: 165 AVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVL 224
            +++A D TV   ++                    D+        A +T+  +  + +++
Sbjct: 257 TIYVAQDCTVYNSDV-------------------IDKQ------SASMTSDNADDKAVII 291

Query: 225 LIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQP 284
           L+P+RLG    N  Y+E +K    +   +G+IGGKP  ++YF G+  + LIY+DPH  Q 
Sbjct: 292 LVPVRLGGERTNTDYLEFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQS 351

Query: 285 AVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKL 339
            V+ +   F P E+FHC  P  +MS  ++DPS  +GF+C+   DF    +++ K+
Sbjct: 352 FVDVSIKDF-PLETFHCPSPK-KMSFRKMDPSCTIGFYCRNVQDFKRASEEITKM 404


>gi|157951704 Fanconi anemia core complex 100 kDa subunit isoform a
           [Homo sapiens]
          Length = 730

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 258 GKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFHC 301
           G PN+    + ++ E +I++    T+P        F+PDE  HC
Sbjct: 115 GDPNALVKILHHLEEPVIFIGALKTEPQAAEAAENFLPDEDVHC 158


>gi|157951702 Fanconi anemia core complex 100 kDa subunit isoform b
           [Homo sapiens]
          Length = 881

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 258 GKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFHC 301
           G PN+    + ++ E +I++    T+P        F+PDE  HC
Sbjct: 266 GDPNALVKILHHLEEPVIFIGALKTEPQAAEAAENFLPDEDVHC 309


>gi|21361682 Tax1 (human T-cell leukemia virus type I) binding
           protein 1 isoform a [Homo sapiens]
          Length = 789

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 19/133 (14%)

Query: 198 DSDRHCNGFPAGAEVTNRPSPWRPLVLLIP-LRLGLTDINEAYVETLKHCFMMPQSLGVI 256
           D    CN +    E+      W+  V +   ++L L ++ + Y E LK     P    + 
Sbjct: 547 DEKAKCNKY--ADELAKMELKWKEQVKIAENVKLELAEVQDNYKE-LKRSLENPAERKME 603

Query: 257 GGKPNSAHYFI------GYV------GEELIYLDPHTTQPAVEPTDGCFIPDESFHCQHP 304
           G    S   F       GYV         L Y +P+ +Q   +  DG F PDE    Q P
Sbjct: 604 GQNSQSPQCFKTCSEQNGYVLTLSNAQPVLQYGNPYASQETRDGADGAFYPDE---IQRP 660

Query: 305 PCRMSIAELDPSI 317
           P R+    L+ ++
Sbjct: 661 PVRVPSWGLEDNV 673


>gi|7706322 homeobox prox 1 [Homo sapiens]
          Length = 244

 Score = 28.9 bits (63), Expect = 8.0
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 171 DNTVVMEEIR-----RLCRTSVPCAGAT--AFPADSDRHCNGFPAGAEVTNRPSPWRPLV 223
           D  V+++ IR     RL + +V  A  T    P   D+H  GF  G  V N  +    L+
Sbjct: 148 DYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVALDKHILGFDTGDAVLNEAAQILRLL 207

Query: 224 LLIPLRLGLTDINEAYV 240
            +  LR   T INEA V
Sbjct: 208 HIEELRELQTKINEAIV 224


>gi|221316634 LIM domain only 7 isoform 2 [Homo sapiens]
          Length = 1385

 Score = 28.9 bits (63), Expect = 8.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 35 IFTEKDEILSDVASRLWFTYRKNFPAIGGTGPTS 68
          ++TE D   S    R+W T  +N+P + GT  +S
Sbjct: 62 VYTEADGTFSSNQRRIWGTNVENWPTVQGTSKSS 95


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,641,565
Number of Sequences: 37866
Number of extensions: 709653
Number of successful extensions: 1293
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1269
Number of HSP's gapped (non-prelim): 20
length of query: 380
length of database: 18,247,518
effective HSP length: 104
effective length of query: 276
effective length of database: 14,309,454
effective search space: 3949409304
effective search space used: 3949409304
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.