BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|30410796 proteasome activator subunit 3 isoform 2 [Homo sapiens] (267 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|30410796 proteasome activator subunit 3 isoform 2 [Homo sapiens] 528 e-150 gi|30410794 proteasome activator subunit 3 isoform 1 [Homo sapiens] 489 e-139 gi|5453990 proteasome activator subunit 1 isoform 1 [Homo sapiens] 195 3e-50 gi|30581141 proteasome activator subunit 1 isoform 2 [Homo sapiens] 171 8e-43 gi|30410792 proteasome activator subunit 2 [Homo sapiens] 155 3e-38 gi|30065649 protein phosphatase 2A, regulatory subunit B' isofor... 30 2.2 gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens] 29 3.8 gi|158341646 hypothetical protein LOC729830 [Homo sapiens] 29 4.9 gi|189163504 serine peptidase inhibitor, Kazal type 5 isoform c ... 28 6.4 gi|74027261 serine peptidase inhibitor, Kazal type 5 isoform b p... 28 6.4 gi|189163501 serine peptidase inhibitor, Kazal type 5 isoform a ... 28 6.4 gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 28 8.4 gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap... 28 8.4 gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sap... 28 8.4 gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap... 28 8.4 gi|28558993 intraflagellar transport 88 homolog isoform 1 [Homo ... 28 8.4 gi|28329439 intraflagellar transport 88 homolog isoform 2 [Homo ... 28 8.4 >gi|30410796 proteasome activator subunit 3 isoform 2 [Homo sapiens] Length = 267 Score = 528 bits (1361), Expect = e-150 Identities = 267/267 (100%), Positives = 267/267 (100%) Query: 1 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS Sbjct: 1 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60 Query: 61 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE Sbjct: 61 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120 Query: 121 KVKPEIRLLIEKCNTPSGKGPHICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRT 180 KVKPEIRLLIEKCNTPSGKGPHICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRT Sbjct: 121 KVKPEIRLLIEKCNTPSGKGPHICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRT 180 Query: 181 VESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQ 240 VESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQ Sbjct: 181 VESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQ 240 Query: 241 YVTLHDMILKNIEKIKRPRSSNAETLY 267 YVTLHDMILKNIEKIKRPRSSNAETLY Sbjct: 241 YVTLHDMILKNIEKIKRPRSSNAETLY 267 >gi|30410794 proteasome activator subunit 3 isoform 1 [Homo sapiens] Length = 254 Score = 489 bits (1260), Expect = e-139 Identities = 254/267 (95%), Positives = 254/267 (95%), Gaps = 13/267 (4%) Query: 1 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS Sbjct: 1 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60 Query: 61 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE Sbjct: 61 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120 Query: 121 KVKPEIRLLIEKCNTPSGKGPHICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRT 180 KVKPEIRLLIEKCNT VKMWVQLLIPRIEDGNNFGVSIQEETVAELRT Sbjct: 121 KVKPEIRLLIEKCNT-------------VKMWVQLLIPRIEDGNNFGVSIQEETVAELRT 167 Query: 181 VESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQ 240 VESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQ Sbjct: 168 VESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQ 227 Query: 241 YVTLHDMILKNIEKIKRPRSSNAETLY 267 YVTLHDMILKNIEKIKRPRSSNAETLY Sbjct: 228 YVTLHDMILKNIEKIKRPRSSNAETLY 254 >gi|5453990 proteasome activator subunit 1 isoform 1 [Homo sapiens] Length = 249 Score = 195 bits (496), Expect = 3e-50 Identities = 102/266 (38%), Positives = 166/266 (62%), Gaps = 19/266 (7%) Query: 3 SLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDM 62 ++L+V E + KVD FRE + ++ E+L+ ++FPKK+ ELD+FLKEP LN +L+ + + + Sbjct: 2 AMLRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPL 61 Query: 63 NLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPN-GMLKSNQQLVDIIEK 121 ++PVPDP+ + K++ ++ +E +G P G + N+++V ++++ Sbjct: 62 DIPVPDPVKEKEKEE-----RKKQQEKEDKDEKKKGEDEDKGPPCGPVNCNEKIVVLLQR 116 Query: 122 VKPEIRLLIEKCNTPSGKGPHICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTV 181 +KPEI+ +IE+ N V W+QL IPRIEDGNNFGV++QE+ + ++ Sbjct: 117 LKPEIKDVIEQLNL-------------VTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSL 163 Query: 182 ESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQY 241 ++ + QIS+Y+ R V+K AK PHV DYR+ V E+DE EY +RL++ E+RN Y Sbjct: 164 HTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAY 223 Query: 242 VTLHDMILKNIEKIKRPRSSNAETLY 267 L+D+ILKN EK+K+PR +Y Sbjct: 224 AVLYDIILKNFEKLKKPRGETKGMIY 249 >gi|30581141 proteasome activator subunit 1 isoform 2 [Homo sapiens] Length = 250 Score = 171 bits (432), Expect = 8e-43 Identities = 91/241 (37%), Positives = 150/241 (62%), Gaps = 19/241 (7%) Query: 3 SLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDM 62 ++L+V E + KVD FRE + ++ E+L+ ++FPKK+ ELD+FLKEP LN +L+ + + + Sbjct: 2 AMLRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPL 61 Query: 63 NLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPN-GMLKSNQQLVDIIEK 121 ++PVPDP+ + K++ ++ +E +G P G + N+++V ++++ Sbjct: 62 DIPVPDPVKEKEKEE-----RKKQQEKEDKDEKKKGEDEDKGPPCGPVNCNEKIVVLLQR 116 Query: 122 VKPEIRLLIEKCNTPSGKGPHICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTV 181 +KPEI+ +IE+ N V W+QL IPRIEDGNNFGV++QE+ + ++ Sbjct: 117 LKPEIKDVIEQLNL-------------VTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSL 163 Query: 182 ESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQY 241 ++ + QIS+Y+ R V+K AK PHV DYR+ V E+DE EY +RL++ E+RN Y Sbjct: 164 HTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAY 223 Query: 242 V 242 V Sbjct: 224 V 224 >gi|30410792 proteasome activator subunit 2 [Homo sapiens] Length = 239 Score = 155 bits (392), Expect = 3e-38 Identities = 84/263 (31%), Positives = 145/263 (55%), Gaps = 30/263 (11%) Query: 5 LKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNL 64 +++ E + +V+ FR+ + EAE+ + F P+K++ L+ L+E LN+ DLT + + +++ Sbjct: 7 VRLSGEARKQVEVFRQNLFQEAEEFLYRFLPQKIIYLNQLLQEDSLNVADLTSLRAPLDI 66 Query: 65 PVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKP 124 P+PDP D ++ +K+ + +C G L N++++ ++ VKP Sbjct: 67 PIPDP---PPKDDEMETDKQEKKEVHKC--------------GFLPGNEKVLSLLALVKP 109 Query: 125 EIRLLIEKCNTPSGKGPHICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESE 184 E+ L EKC + V W+Q LIP+IEDGN+FGV+IQE+ + + V+++ Sbjct: 110 EVWTLKEKC-------------ILVITWIQHLIPKIEDGNDFGVAIQEKVLERVNAVKTK 156 Query: 185 AASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTL 244 ++ IS+Y+ R V+K +K HV DYR V E DE Y LR ++ +LR Y L Sbjct: 157 VEAFQTTISKYFSERGDAVAKASKETHVMDYRALVHERDEAAYGELRAMVLDLRAFYAEL 216 Query: 245 HDMILKNIEKIKRPRSSNAETLY 267 + +I N+EKI P+ ++Y Sbjct: 217 YHIISSNLEKIVNPKGEEKPSMY 239 >gi|30065649 protein phosphatase 2A, regulatory subunit B' isoform d [Homo sapiens] Length = 281 Score = 30.0 bits (66), Expect = 2.2 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%) Query: 4 LLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLL----ELDSFLKEPILN 51 +L +++ VK K +F R++ EAE+LVA P L E+ +LKE + N Sbjct: 52 ILTLNEGVKGKKLTFEYRVSEEAENLVATVVPTHLAAAVPEVAVYLKESVGN 103 >gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens] Length = 1946 Score = 29.3 bits (64), Expect = 3.8 Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 10/114 (8%) Query: 36 KKLLELDSFLKEPILNIHDLTQIHSDMNLPVP-----DPILLTNSHD--GLDGPTYKKRR 88 K L +L +K+ + + D TQ++SD+ V + +L + D L T + RR Sbjct: 1653 KSLGQLQIQIKDLQMQLDDSTQLNSDLKEQVAVAERRNSLLQSELEDLRSLQEQTERGRR 1712 Query: 89 LDECE--EAFQGTKVFVMPN-GMLKSNQQLVDIIEKVKPEIRLLIEKCNTPSGK 139 L E E EA + +F N +L ++L + +++ E ++++C K Sbjct: 1713 LSEEELLEATERINLFYTQNTSLLSQKKKLEADVARMQKEAEEVVQECQNAEEK 1766 >gi|158341646 hypothetical protein LOC729830 [Homo sapiens] Length = 1040 Score = 28.9 bits (63), Expect = 4.9 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 17/77 (22%) Query: 25 EAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTNSHDGLD---G 81 E+E+L+A + D +KE L + N P PDP+LLT +G + G Sbjct: 747 ESEELIAQY--------DQIIKELDSGAEGLME----QNYPTPDPLLLTKEEEGKEESKG 794 Query: 82 PTYK--KRRLDECEEAF 96 K K+ L++ E+ F Sbjct: 795 EKEKEGKKELEDEEDDF 811 >gi|189163504 serine peptidase inhibitor, Kazal type 5 isoform c precursor [Homo sapiens] Length = 916 Score = 28.5 bits (62), Expect = 6.4 Identities = 16/50 (32%), Positives = 23/50 (46%) Query: 78 GLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIR 127 G DG TY R E A G+++ V G KS+ D+ +P +R Sbjct: 120 GTDGKTYDNRCALCAENAKTGSQIGVKSEGECKSSNPEQDVCSAFRPFVR 169 >gi|74027261 serine peptidase inhibitor, Kazal type 5 isoform b precursor [Homo sapiens] Length = 1064 Score = 28.5 bits (62), Expect = 6.4 Identities = 16/50 (32%), Positives = 23/50 (46%) Query: 78 GLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIR 127 G DG TY R E A G+++ V G KS+ D+ +P +R Sbjct: 120 GTDGKTYDNRCALCAENAKTGSQIGVKSEGECKSSNPEQDVCSAFRPFVR 169 >gi|189163501 serine peptidase inhibitor, Kazal type 5 isoform a precursor [Homo sapiens] Length = 1094 Score = 28.5 bits (62), Expect = 6.4 Identities = 16/50 (32%), Positives = 23/50 (46%) Query: 78 GLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIR 127 G DG TY R E A G+++ V G KS+ D+ +P +R Sbjct: 120 GTDGKTYDNRCALCAENAKTGSQIGVKSEGECKSSNPEQDVCSAFRPFVR 169 >gi|226246554 hypothetical protein LOC643677 [Homo sapiens] Length = 7081 Score = 28.1 bits (61), Expect = 8.4 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 143 ICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKL 202 IC + W + + I + ++ G S + T + + ++S + AK+ Sbjct: 3569 ICHKRRTSKWKKSVFSHILNTSDCGASSNRLEMQWNMT--DKMVNVKHRMSEIDLVAAKI 3626 Query: 203 VSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDM-ILKNIEKIKRPRSS 261 I PH + + T+ + S + IS+ +N V DM +K+ I +PR S Sbjct: 3627 CESILSLPHFKLNKETIDGVISSNVKSTKQHISQGKNDRVKAMDMKRIKSPNIILKPRKS 3686 Query: 262 N 262 + Sbjct: 3687 S 3687 >gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens] Length = 6929 Score = 28.1 bits (61), Expect = 8.4 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 143 ICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKL 202 IC + W + + I + ++ G S + T + + ++S + AK+ Sbjct: 3498 ICHKRRTSKWKKSVFSHILNTSDCGASSNRLEMQWNMT--DKMVNVKHRMSEIDLVAAKI 3555 Query: 203 VSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDM-ILKNIEKIKRPRSS 261 I PH + + T+ + S + IS+ +N V DM +K+ I +PR S Sbjct: 3556 CESILSLPHFKLNKETIDGVISSNVKSTKQHISQGKNDRVKAMDMKRIKSPNIILKPRKS 3615 Query: 262 N 262 + Sbjct: 3616 S 3616 >gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sapiens] Length = 6929 Score = 28.1 bits (61), Expect = 8.4 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 143 ICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKL 202 IC + W + + I + ++ G S + T + + ++S + AK+ Sbjct: 3498 ICHKRRTSKWKKSVFSHILNTSDCGASSNRLEMQWNMT--DKMVNVKHRMSEIDLVAAKI 3555 Query: 203 VSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDM-ILKNIEKIKRPRSS 261 I PH + + T+ + S + IS+ +N V DM +K+ I +PR S Sbjct: 3556 CESILSLPHFKLNKETIDGVISSNVKSTKQHISQGKNDRVKAMDMKRIKSPNIILKPRKS 3615 Query: 262 N 262 + Sbjct: 3616 S 3616 >gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sapiens] Length = 6929 Score = 28.1 bits (61), Expect = 8.4 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 143 ICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKL 202 IC + W + + I + ++ G S + T + + ++S + AK+ Sbjct: 3498 ICHKRRTSKWKKSVFSHILNTSDCGASSNRLEMQWNMT--DKMVNVKHRMSEIDLVAAKI 3555 Query: 203 VSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDM-ILKNIEKIKRPRSS 261 I PH + + T+ + S + IS+ +N V DM +K+ I +PR S Sbjct: 3556 CESILSLPHFKLNKETIDGVISSNVKSTKQHISQGKNDRVKAMDMKRIKSPNIILKPRKS 3615 Query: 262 N 262 + Sbjct: 3616 S 3616 >gi|28558993 intraflagellar transport 88 homolog isoform 1 [Homo sapiens] Length = 833 Score = 28.1 bits (61), Expect = 8.4 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 13/100 (13%) Query: 178 LRTVESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISL------R 231 LR +E E + + +Y +T AKL++ + + Y V + +Y+ L Sbjct: 373 LRQMERERKAMAE---KYIMTSAKLIAPVIETSFAAGYDWCVEVVKASQYVELANDLEIN 429 Query: 232 LIISELR----NQYVTLHDMILKNIEKIKRPRSSNAETLY 267 ++ LR NQ V + ++ K ++K ++N LY Sbjct: 430 KAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALY 469 >gi|28329439 intraflagellar transport 88 homolog isoform 2 [Homo sapiens] Length = 824 Score = 28.1 bits (61), Expect = 8.4 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 13/100 (13%) Query: 178 LRTVESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISL------R 231 LR +E E + + +Y +T AKL++ + + Y V + +Y+ L Sbjct: 364 LRQMERERKAMAE---KYIMTSAKLIAPVIETSFAAGYDWCVEVVKASQYVELANDLEIN 420 Query: 232 LIISELR----NQYVTLHDMILKNIEKIKRPRSSNAETLY 267 ++ LR NQ V + ++ K ++K ++N LY Sbjct: 421 KAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALY 460 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,373,643 Number of Sequences: 37866 Number of extensions: 413183 Number of successful extensions: 1070 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 1051 Number of HSP's gapped (non-prelim): 23 length of query: 267 length of database: 18,247,518 effective HSP length: 100 effective length of query: 167 effective length of database: 14,460,918 effective search space: 2414973306 effective search space used: 2414973306 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.