Guide to the Human Genome
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Search of human proteins with 30410796

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|30410796 proteasome activator subunit 3 isoform 2 [Homo
sapiens]
         (267 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|30410796 proteasome activator subunit 3 isoform 2 [Homo sapiens]   528   e-150
gi|30410794 proteasome activator subunit 3 isoform 1 [Homo sapiens]   489   e-139
gi|5453990 proteasome activator subunit 1 isoform 1 [Homo sapiens]    195   3e-50
gi|30581141 proteasome activator subunit 1 isoform 2 [Homo sapiens]   171   8e-43
gi|30410792 proteasome activator subunit 2 [Homo sapiens]             155   3e-38
gi|30065649 protein phosphatase 2A, regulatory subunit B' isofor...    30   2.2  
gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens]               29   3.8  
gi|158341646 hypothetical protein LOC729830 [Homo sapiens]             29   4.9  
gi|189163504 serine peptidase inhibitor, Kazal type 5 isoform c ...    28   6.4  
gi|74027261 serine peptidase inhibitor, Kazal type 5 isoform b p...    28   6.4  
gi|189163501 serine peptidase inhibitor, Kazal type 5 isoform a ...    28   6.4  
gi|226246554 hypothetical protein LOC643677 [Homo sapiens]             28   8.4  
gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap...    28   8.4  
gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sap...    28   8.4  
gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap...    28   8.4  
gi|28558993 intraflagellar transport 88 homolog isoform 1 [Homo ...    28   8.4  
gi|28329439 intraflagellar transport 88 homolog isoform 2 [Homo ...    28   8.4  

>gi|30410796 proteasome activator subunit 3 isoform 2 [Homo sapiens]
          Length = 267

 Score =  528 bits (1361), Expect = e-150
 Identities = 267/267 (100%), Positives = 267/267 (100%)

Query: 1   MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60
           MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
Sbjct: 1   MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60

Query: 61  DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120
           DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
Sbjct: 61  DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120

Query: 121 KVKPEIRLLIEKCNTPSGKGPHICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRT 180
           KVKPEIRLLIEKCNTPSGKGPHICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRT
Sbjct: 121 KVKPEIRLLIEKCNTPSGKGPHICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRT 180

Query: 181 VESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQ 240
           VESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQ
Sbjct: 181 VESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQ 240

Query: 241 YVTLHDMILKNIEKIKRPRSSNAETLY 267
           YVTLHDMILKNIEKIKRPRSSNAETLY
Sbjct: 241 YVTLHDMILKNIEKIKRPRSSNAETLY 267


>gi|30410794 proteasome activator subunit 3 isoform 1 [Homo sapiens]
          Length = 254

 Score =  489 bits (1260), Expect = e-139
 Identities = 254/267 (95%), Positives = 254/267 (95%), Gaps = 13/267 (4%)

Query: 1   MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60
           MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
Sbjct: 1   MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60

Query: 61  DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120
           DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
Sbjct: 61  DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120

Query: 121 KVKPEIRLLIEKCNTPSGKGPHICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRT 180
           KVKPEIRLLIEKCNT             VKMWVQLLIPRIEDGNNFGVSIQEETVAELRT
Sbjct: 121 KVKPEIRLLIEKCNT-------------VKMWVQLLIPRIEDGNNFGVSIQEETVAELRT 167

Query: 181 VESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQ 240
           VESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQ
Sbjct: 168 VESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQ 227

Query: 241 YVTLHDMILKNIEKIKRPRSSNAETLY 267
           YVTLHDMILKNIEKIKRPRSSNAETLY
Sbjct: 228 YVTLHDMILKNIEKIKRPRSSNAETLY 254


>gi|5453990 proteasome activator subunit 1 isoform 1 [Homo sapiens]
          Length = 249

 Score =  195 bits (496), Expect = 3e-50
 Identities = 102/266 (38%), Positives = 166/266 (62%), Gaps = 19/266 (7%)

Query: 3   SLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDM 62
           ++L+V  E + KVD FRE + ++ E+L+ ++FPKK+ ELD+FLKEP LN  +L+ + + +
Sbjct: 2   AMLRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPL 61

Query: 63  NLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPN-GMLKSNQQLVDIIEK 121
           ++PVPDP+      +       K++  ++ +E  +G      P  G +  N+++V ++++
Sbjct: 62  DIPVPDPVKEKEKEE-----RKKQQEKEDKDEKKKGEDEDKGPPCGPVNCNEKIVVLLQR 116

Query: 122 VKPEIRLLIEKCNTPSGKGPHICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTV 181
           +KPEI+ +IE+ N              V  W+QL IPRIEDGNNFGV++QE+    + ++
Sbjct: 117 LKPEIKDVIEQLNL-------------VTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSL 163

Query: 182 ESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQY 241
            ++   +  QIS+Y+  R   V+K AK PHV DYR+ V E+DE EY  +RL++ E+RN Y
Sbjct: 164 HTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAY 223

Query: 242 VTLHDMILKNIEKIKRPRSSNAETLY 267
             L+D+ILKN EK+K+PR      +Y
Sbjct: 224 AVLYDIILKNFEKLKKPRGETKGMIY 249


>gi|30581141 proteasome activator subunit 1 isoform 2 [Homo sapiens]
          Length = 250

 Score =  171 bits (432), Expect = 8e-43
 Identities = 91/241 (37%), Positives = 150/241 (62%), Gaps = 19/241 (7%)

Query: 3   SLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDM 62
           ++L+V  E + KVD FRE + ++ E+L+ ++FPKK+ ELD+FLKEP LN  +L+ + + +
Sbjct: 2   AMLRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPL 61

Query: 63  NLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPN-GMLKSNQQLVDIIEK 121
           ++PVPDP+      +       K++  ++ +E  +G      P  G +  N+++V ++++
Sbjct: 62  DIPVPDPVKEKEKEE-----RKKQQEKEDKDEKKKGEDEDKGPPCGPVNCNEKIVVLLQR 116

Query: 122 VKPEIRLLIEKCNTPSGKGPHICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTV 181
           +KPEI+ +IE+ N              V  W+QL IPRIEDGNNFGV++QE+    + ++
Sbjct: 117 LKPEIKDVIEQLNL-------------VTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSL 163

Query: 182 ESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQY 241
            ++   +  QIS+Y+  R   V+K AK PHV DYR+ V E+DE EY  +RL++ E+RN Y
Sbjct: 164 HTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAY 223

Query: 242 V 242
           V
Sbjct: 224 V 224


>gi|30410792 proteasome activator subunit 2 [Homo sapiens]
          Length = 239

 Score =  155 bits (392), Expect = 3e-38
 Identities = 84/263 (31%), Positives = 145/263 (55%), Gaps = 30/263 (11%)

Query: 5   LKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNL 64
           +++  E + +V+ FR+ +  EAE+ +  F P+K++ L+  L+E  LN+ DLT + + +++
Sbjct: 7   VRLSGEARKQVEVFRQNLFQEAEEFLYRFLPQKIIYLNQLLQEDSLNVADLTSLRAPLDI 66

Query: 65  PVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKP 124
           P+PDP       D ++    +K+ + +C              G L  N++++ ++  VKP
Sbjct: 67  PIPDP---PPKDDEMETDKQEKKEVHKC--------------GFLPGNEKVLSLLALVKP 109

Query: 125 EIRLLIEKCNTPSGKGPHICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESE 184
           E+  L EKC             + V  W+Q LIP+IEDGN+FGV+IQE+ +  +  V+++
Sbjct: 110 EVWTLKEKC-------------ILVITWIQHLIPKIEDGNDFGVAIQEKVLERVNAVKTK 156

Query: 185 AASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTL 244
             ++   IS+Y+  R   V+K +K  HV DYR  V E DE  Y  LR ++ +LR  Y  L
Sbjct: 157 VEAFQTTISKYFSERGDAVAKASKETHVMDYRALVHERDEAAYGELRAMVLDLRAFYAEL 216

Query: 245 HDMILKNIEKIKRPRSSNAETLY 267
           + +I  N+EKI  P+     ++Y
Sbjct: 217 YHIISSNLEKIVNPKGEEKPSMY 239


>gi|30065649 protein phosphatase 2A, regulatory subunit B' isoform d
           [Homo sapiens]
          Length = 281

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 4   LLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLL----ELDSFLKEPILN 51
           +L +++ VK K  +F  R++ EAE+LVA   P  L     E+  +LKE + N
Sbjct: 52  ILTLNEGVKGKKLTFEYRVSEEAENLVATVVPTHLAAAVPEVAVYLKESVGN 103


>gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens]
          Length = 1946

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 10/114 (8%)

Query: 36   KKLLELDSFLKEPILNIHDLTQIHSDMNLPVP-----DPILLTNSHD--GLDGPTYKKRR 88
            K L +L   +K+  + + D TQ++SD+   V      + +L +   D   L   T + RR
Sbjct: 1653 KSLGQLQIQIKDLQMQLDDSTQLNSDLKEQVAVAERRNSLLQSELEDLRSLQEQTERGRR 1712

Query: 89   LDECE--EAFQGTKVFVMPN-GMLKSNQQLVDIIEKVKPEIRLLIEKCNTPSGK 139
            L E E  EA +   +F   N  +L   ++L   + +++ E   ++++C     K
Sbjct: 1713 LSEEELLEATERINLFYTQNTSLLSQKKKLEADVARMQKEAEEVVQECQNAEEK 1766


>gi|158341646 hypothetical protein LOC729830 [Homo sapiens]
          Length = 1040

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 17/77 (22%)

Query: 25  EAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTNSHDGLD---G 81
           E+E+L+A +        D  +KE       L +     N P PDP+LLT   +G +   G
Sbjct: 747 ESEELIAQY--------DQIIKELDSGAEGLME----QNYPTPDPLLLTKEEEGKEESKG 794

Query: 82  PTYK--KRRLDECEEAF 96
              K  K+ L++ E+ F
Sbjct: 795 EKEKEGKKELEDEEDDF 811


>gi|189163504 serine peptidase inhibitor, Kazal type 5 isoform c
           precursor [Homo sapiens]
          Length = 916

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 78  GLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIR 127
           G DG TY  R     E A  G+++ V   G  KS+    D+    +P +R
Sbjct: 120 GTDGKTYDNRCALCAENAKTGSQIGVKSEGECKSSNPEQDVCSAFRPFVR 169


>gi|74027261 serine peptidase inhibitor, Kazal type 5 isoform b
           precursor [Homo sapiens]
          Length = 1064

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 78  GLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIR 127
           G DG TY  R     E A  G+++ V   G  KS+    D+    +P +R
Sbjct: 120 GTDGKTYDNRCALCAENAKTGSQIGVKSEGECKSSNPEQDVCSAFRPFVR 169


>gi|189163501 serine peptidase inhibitor, Kazal type 5 isoform a
           precursor [Homo sapiens]
          Length = 1094

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 78  GLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIR 127
           G DG TY  R     E A  G+++ V   G  KS+    D+    +P +R
Sbjct: 120 GTDGKTYDNRCALCAENAKTGSQIGVKSEGECKSSNPEQDVCSAFRPFVR 169


>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
          Length = 7081

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 143  ICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKL 202
            IC   +   W + +   I + ++ G S     +    T   +  +   ++S   +  AK+
Sbjct: 3569 ICHKRRTSKWKKSVFSHILNTSDCGASSNRLEMQWNMT--DKMVNVKHRMSEIDLVAAKI 3626

Query: 203  VSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDM-ILKNIEKIKRPRSS 261
               I   PH +  + T+  +      S +  IS+ +N  V   DM  +K+   I +PR S
Sbjct: 3627 CESILSLPHFKLNKETIDGVISSNVKSTKQHISQGKNDRVKAMDMKRIKSPNIILKPRKS 3686

Query: 262  N 262
            +
Sbjct: 3687 S 3687


>gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
          Length = 6929

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 143  ICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKL 202
            IC   +   W + +   I + ++ G S     +    T   +  +   ++S   +  AK+
Sbjct: 3498 ICHKRRTSKWKKSVFSHILNTSDCGASSNRLEMQWNMT--DKMVNVKHRMSEIDLVAAKI 3555

Query: 203  VSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDM-ILKNIEKIKRPRSS 261
               I   PH +  + T+  +      S +  IS+ +N  V   DM  +K+   I +PR S
Sbjct: 3556 CESILSLPHFKLNKETIDGVISSNVKSTKQHISQGKNDRVKAMDMKRIKSPNIILKPRKS 3615

Query: 262  N 262
            +
Sbjct: 3616 S 3616


>gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
          Length = 6929

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 143  ICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKL 202
            IC   +   W + +   I + ++ G S     +    T   +  +   ++S   +  AK+
Sbjct: 3498 ICHKRRTSKWKKSVFSHILNTSDCGASSNRLEMQWNMT--DKMVNVKHRMSEIDLVAAKI 3555

Query: 203  VSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDM-ILKNIEKIKRPRSS 261
               I   PH +  + T+  +      S +  IS+ +N  V   DM  +K+   I +PR S
Sbjct: 3556 CESILSLPHFKLNKETIDGVISSNVKSTKQHISQGKNDRVKAMDMKRIKSPNIILKPRKS 3615

Query: 262  N 262
            +
Sbjct: 3616 S 3616


>gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
          Length = 6929

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 143  ICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKL 202
            IC   +   W + +   I + ++ G S     +    T   +  +   ++S   +  AK+
Sbjct: 3498 ICHKRRTSKWKKSVFSHILNTSDCGASSNRLEMQWNMT--DKMVNVKHRMSEIDLVAAKI 3555

Query: 203  VSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDM-ILKNIEKIKRPRSS 261
               I   PH +  + T+  +      S +  IS+ +N  V   DM  +K+   I +PR S
Sbjct: 3556 CESILSLPHFKLNKETIDGVISSNVKSTKQHISQGKNDRVKAMDMKRIKSPNIILKPRKS 3615

Query: 262  N 262
            +
Sbjct: 3616 S 3616


>gi|28558993 intraflagellar transport 88 homolog isoform 1 [Homo
           sapiens]
          Length = 833

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 13/100 (13%)

Query: 178 LRTVESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISL------R 231
           LR +E E  +  +   +Y +T AKL++ + +      Y   V  +   +Y+ L       
Sbjct: 373 LRQMERERKAMAE---KYIMTSAKLIAPVIETSFAAGYDWCVEVVKASQYVELANDLEIN 429

Query: 232 LIISELR----NQYVTLHDMILKNIEKIKRPRSSNAETLY 267
             ++ LR    NQ V +  ++ K   ++K   ++N   LY
Sbjct: 430 KAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALY 469


>gi|28329439 intraflagellar transport 88 homolog isoform 2 [Homo
           sapiens]
          Length = 824

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 13/100 (13%)

Query: 178 LRTVESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISL------R 231
           LR +E E  +  +   +Y +T AKL++ + +      Y   V  +   +Y+ L       
Sbjct: 364 LRQMERERKAMAE---KYIMTSAKLIAPVIETSFAAGYDWCVEVVKASQYVELANDLEIN 420

Query: 232 LIISELR----NQYVTLHDMILKNIEKIKRPRSSNAETLY 267
             ++ LR    NQ V +  ++ K   ++K   ++N   LY
Sbjct: 421 KAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALY 460


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.136    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,373,643
Number of Sequences: 37866
Number of extensions: 413183
Number of successful extensions: 1070
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1051
Number of HSP's gapped (non-prelim): 23
length of query: 267
length of database: 18,247,518
effective HSP length: 100
effective length of query: 167
effective length of database: 14,460,918
effective search space: 2414973306
effective search space used: 2414973306
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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