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Search of human proteins with 30179915
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30179915 paired immunoglobulin-like type 2 receptor beta
isoform a precursor [Homo sapiens]
(227 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30179915 paired immunoglobulin-like type 2 receptor beta isof... 463 e-131
gi|30179911 paired immunoglobulin-like type 2 receptor beta isof... 463 e-131
gi|30179909 paired immunoglobulin-like type 2 receptor alpha iso... 367 e-102
gi|30179905 paired immunoglobulin-like type 2 receptor alpha iso... 288 3e-78
gi|30179907 paired immunoglobulin-like type 2 receptor alpha iso... 286 1e-77
gi|30179913 paired immunoglobulin-like type 2 receptor beta isof... 48 6e-06
gi|148664190 immunoglobulin superfamily, member 4D isoform 1 [Ho... 42 3e-04
gi|27886631 CD8b antigen isoform 1 precursor [Homo sapiens] 37 0.014
gi|4826667 CD8b antigen isoform 5 precursor [Homo sapiens] 37 0.014
gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens] 37 0.014
gi|27886635 CD8b antigen isoform 3 precursor [Homo sapiens] 37 0.014
gi|4502659 sialic acid binding Ig-like lectin 5 [Homo sapiens] 35 0.040
gi|56550061 leukocyte membrane antigen [Homo sapiens] 35 0.040
gi|148762980 sialic acid binding Ig-like lectin 14 [Homo sapiens] 35 0.040
gi|27886637 CD8b antigen isoform 4 precursor [Homo sapiens] 35 0.069
gi|239750743 PREDICTED: hypothetical protein XP_002347522 [Homo ... 32 0.34
gi|205277425 immunoglobulin superfamily, member 9 isoform a [Hom... 32 0.34
gi|205277423 immunoglobulin superfamily, member 9 isoform b [Hom... 32 0.34
gi|239758119 PREDICTED: similar to hCG2042717 [Homo sapiens] 32 0.58
gi|239745042 PREDICTED: similar to hCG2003024 [Homo sapiens] 32 0.58
gi|5031913 melan-A [Homo sapiens] 31 0.76
gi|47106069 sialic acid binding Ig-like lectin 15 [Homo sapiens] 31 0.76
gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precur... 31 0.99
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 31 0.99
gi|157384977 glutamate receptor, ionotropic, delta 2 [Homo sapiens] 30 1.3
gi|226529863 T-cell immunoglobulin and mucin domain containing 4... 30 1.7
gi|226498466 T-cell immunoglobulin and mucin domain containing 4... 30 1.7
gi|9507239 immunoglobulin iota chain precursor [Homo sapiens] 30 1.7
gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens] 30 2.2
gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo ... 30 2.2
>gi|30179915 paired immunoglobulin-like type 2 receptor beta isoform
a precursor [Homo sapiens]
Length = 227
Score = 463 bits (1192), Expect = e-131
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ 120
LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ
Sbjct: 61 LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ 120
Query: 121 SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTIAGLRVTESKGHSE 180
SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTIAGLRVTESKGHSE
Sbjct: 121 SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTIAGLRVTESKGHSE 180
Query: 181 SWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRKGSRAPSSDF 227
SWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRKGSRAPSSDF
Sbjct: 181 SWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRKGSRAPSSDF 227
>gi|30179911 paired immunoglobulin-like type 2 receptor beta isoform
a precursor [Homo sapiens]
Length = 227
Score = 463 bits (1192), Expect = e-131
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ 120
LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ
Sbjct: 61 LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ 120
Query: 121 SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTIAGLRVTESKGHSE 180
SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTIAGLRVTESKGHSE
Sbjct: 121 SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTIAGLRVTESKGHSE 180
Query: 181 SWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRKGSRAPSSDF 227
SWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRKGSRAPSSDF
Sbjct: 181 SWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRKGSRAPSSDF 227
>gi|30179909 paired immunoglobulin-like type 2 receptor alpha
isoform 1 precursor [Homo sapiens]
Length = 303
Score = 367 bits (943), Expect = e-102
Identities = 184/229 (80%), Positives = 199/229 (86%), Gaps = 10/229 (4%)
Query: 1 MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLL LL PPAFLQP GSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ 120
LA P+VRISWRRGHFH QSFYSTRPPSIHKDYVNRLFLNWTEGQ+SGFLRISNL+K+DQ
Sbjct: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
Query: 121 SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTT--------TTTWRPSSTTTIAGLRV 172
SVYFCRVELDTR SGRQQ QSI+GTKL+ITQAVTT TTTWR SSTTT GLRV
Sbjct: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV 180
Query: 173 TESKGHSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRKGSR 221
T+ K S+SWH+SL+TA+ VA+AV VL +ILGL+CLL WRRRKG +
Sbjct: 181 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLR--WRRRKGQQ 227
>gi|30179905 paired immunoglobulin-like type 2 receptor alpha
isoform 2 precursor [Homo sapiens]
Length = 230
Score = 288 bits (736), Expect = 3e-78
Identities = 139/162 (85%), Positives = 146/162 (90%)
Query: 1 MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLL LL PPAFLQP GSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ 120
LA P+VRISWRRGHFH QSFYSTRPPSIHKDYVNRLFLNWTEGQ+SGFLRISNL+K+DQ
Sbjct: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
Query: 121 SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPS 162
SVYFCRVELDTR SGRQQ QSI+GTKL+ITQ T P+
Sbjct: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGQQRTKATTPA 162
>gi|30179907 paired immunoglobulin-like type 2 receptor alpha
isoform 3 precursor [Homo sapiens]
Length = 175
Score = 286 bits (732), Expect = 1e-77
Identities = 138/157 (87%), Positives = 145/157 (92%)
Query: 1 MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLL LL PPAFLQP GSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ 120
LA P+VRISWRRGHFH QSFYSTRPPSIHKDYVNRLFLNWTEGQ+SGFLRISNL+K+DQ
Sbjct: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
Query: 121 SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTT 157
SVYFCRVELDTR SGRQQ QSI+GTKL+ITQ + T
Sbjct: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGNPSKT 157
>gi|30179913 paired immunoglobulin-like type 2 receptor beta
isoform b [Homo sapiens]
Length = 149
Score = 48.1 bits (113), Expect = 6e-06
Identities = 22/22 (100%), Positives = 22/22 (100%)
Query: 1 MGRPLLLPLLLLLQPPAFLQPG 22
MGRPLLLPLLLLLQPPAFLQPG
Sbjct: 1 MGRPLLLPLLLLLQPPAFLQPG 22
>gi|148664190 immunoglobulin superfamily, member 4D isoform 1 [Homo
sapiens]
Length = 442
Score = 42.4 bits (98), Expect = 3e-04
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 110 LRISNLRKEDQSVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTIAG 169
L I+NL K D Y C ++ + + TI TTTTT ++TTTI
Sbjct: 298 LFINNLNKTDNGTYRCEASNIVGKAHSDYMLYVYDPPTTIPPPTTTTTT-TTTTTTTILT 356
Query: 170 LRVTESKGHSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRKGS 220
+ +T+S+ E ++D A+ + VAV+ +L LL +L ++ R KG+
Sbjct: 357 I-ITDSRAGEEGSIRAVDHAV-IGGVVAVVVFAMLCLLIILGRYFARHKGT 405
>gi|27886631 CD8b antigen isoform 1 precursor [Homo sapiens]
Length = 246
Score = 37.0 bits (84), Expect = 0.014
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 18/161 (11%)
Query: 66 NVRISWRR--------GHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRK 117
N+RI W R H + + + +IH + V + + L +++++
Sbjct: 49 NMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKP 108
Query: 118 EDQSVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTIAGLRVTESKG 177
ED +YFC + G +L KGT+L++ + TT ST R+
Sbjct: 109 EDSGIYFCMI------VGSPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLP---- 158
Query: 178 HSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRK 218
E+ L + I + L VA + +++ L + L RRR+
Sbjct: 159 RPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRR 199
>gi|4826667 CD8b antigen isoform 5 precursor [Homo sapiens]
Length = 210
Score = 37.0 bits (84), Expect = 0.014
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 18/161 (11%)
Query: 66 NVRISWRR--------GHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRK 117
N+RI W R H + + + +IH + V + + L +++++
Sbjct: 49 NMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKP 108
Query: 118 EDQSVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTIAGLRVTESKG 177
ED +YFC + G +L KGT+L++ + TT ST R+
Sbjct: 109 EDSGIYFCMI------VGSPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLP---- 158
Query: 178 HSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRK 218
E+ L + I + L VA + +++ L + L RRR+
Sbjct: 159 RPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRR 199
>gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens]
Length = 243
Score = 37.0 bits (84), Expect = 0.014
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 18/161 (11%)
Query: 66 NVRISWRR--------GHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRK 117
N+RI W R H + + + +IH + V + + L +++++
Sbjct: 49 NMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKP 108
Query: 118 EDQSVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTIAGLRVTESKG 177
ED +YFC + G +L KGT+L++ + TT ST R+
Sbjct: 109 EDSGIYFCMI------VGSPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLP---- 158
Query: 178 HSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRK 218
E+ L + I + L VA + +++ L + L RRR+
Sbjct: 159 RPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRR 199
>gi|27886635 CD8b antigen isoform 3 precursor [Homo sapiens]
Length = 221
Score = 37.0 bits (84), Expect = 0.014
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 18/161 (11%)
Query: 66 NVRISWRR--------GHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRK 117
N+RI W R H + + + +IH + V + + L +++++
Sbjct: 49 NMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKP 108
Query: 118 EDQSVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTIAGLRVTESKG 177
ED +YFC + G +L KGT+L++ + TT ST R+
Sbjct: 109 EDSGIYFCMI------VGSPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLP---- 158
Query: 178 HSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRK 218
E+ L + I + L VA + +++ L + L RRR+
Sbjct: 159 RPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRR 199
>gi|4502659 sialic acid binding Ig-like lectin 5 [Homo sapiens]
Length = 551
Score = 35.4 bits (80), Expect = 0.040
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 6 LLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPW-ELAIV 64
+LPLLLL L GGS P +Y + K ++ G V +P SF YPW
Sbjct: 1 MLPLLLLP-----LLWGGSLQEKP--VYELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSS 53
Query: 65 PNVRISWRRG---HFHGQSFYSTRPP-SIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ 120
P + + W R ++ + + P + + R L +++ L I + R ED
Sbjct: 54 PPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDT 113
Query: 121 SVYFCRVE--LDTRRSGRQQLQSIKGTKL 147
YF RVE D + S +Q +++ T L
Sbjct: 114 GSYFFRVERGRDVKYSYQQNKLNLEVTAL 142
>gi|56550061 leukocyte membrane antigen [Homo sapiens]
Length = 299
Score = 35.4 bits (80), Expect = 0.040
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Query: 112 ISNLRKEDQSVYFCRVELDTRRSGRQQL-----------QSIKGTKLTITQAVTTTTTWR 160
+ NL +ED Y+C V+ R + S+ +T + T TT +
Sbjct: 90 LENLTEEDAGTYWCGVDTPWLRDFHDPVVEVEVSVFPASTSMTPASITAAKTSTITTAFP 149
Query: 161 PSSTTTIAGLRVTESKGHSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWR 215
P S+TT+ + T S E +++ ++ L +++L ++L L+ LL WR
Sbjct: 150 PVSSTTLFAVGATHSASIQEETEEVVNS--QLPLLLSLLALLLLLLVGASLLAWR 202
>gi|148762980 sialic acid binding Ig-like lectin 14 [Homo sapiens]
Length = 396
Score = 35.4 bits (80), Expect = 0.040
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 6 LLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPW-ELAIV 64
+LPLLLL L GGS P +Y + K ++ G V +P SF YPW
Sbjct: 1 MLPLLLLP-----LLWGGSLQEKP--VYELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSS 53
Query: 65 PNVRISWRRG---HFHGQSFYSTRPP-SIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ 120
P + + W R ++ + + P + + R L +++ L I + R ED
Sbjct: 54 PPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDT 113
Query: 121 SVYFCRVE--LDTRRSGRQQLQSIKGTKL 147
YF RVE D + S +Q +++ T L
Sbjct: 114 GSYFFRVERGRDVKYSYQQNKLNLEVTAL 142
>gi|27886637 CD8b antigen isoform 4 precursor [Homo sapiens]
Length = 213
Score = 34.7 bits (78), Expect = 0.069
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 66 NVRISWRR--------GHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRK 117
N+RI W R H + + + +IH + V + + L +++++
Sbjct: 49 NMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKP 108
Query: 118 EDQSVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTI 167
ED +YFC + G +L KGT+L++ + TT +P+ +T+
Sbjct: 109 EDSGIYFCMI------VGSPELTFGKGTQLSVVDFLPTTA--QPTKKSTL 150
>gi|239750743 PREDICTED: hypothetical protein XP_002347522 [Homo
sapiens]
Length = 172
Score = 32.3 bits (72), Expect = 0.34
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 96 RLFLNWTEGQESGFLRISNLRKEDQSVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTT 155
R ++ + S +L++++LR ED +VY+C DT R G Q S++GT + T
Sbjct: 86 RFTISRDNAKNSLYLQMNSLRAEDTAVYYC--ARDTVR-GTQTQTSLQGTWDNQGKPGTL 142
Query: 156 TTTWRPSSTTTIAGLRVTESK---GHS 179
T P ++ VT K GHS
Sbjct: 143 CTVLTPGASAEFPPSSVTLGKAKDGHS 169
>gi|205277425 immunoglobulin superfamily, member 9 isoform a [Homo
sapiens]
Length = 1179
Score = 32.3 bits (72), Expect = 0.34
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 69 ISWRRGHFHGQSF--YSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQSVYFCR 126
I W R F F + P I DYV R+ L Q+ L+I LR EDQ Y CR
Sbjct: 55 IEWLRFGFLLPIFIQFGLYSPRIDPDYVGRVRL-----QKGASLQIEGLRVEDQGWYECR 109
Query: 127 V 127
V
Sbjct: 110 V 110
>gi|205277423 immunoglobulin superfamily, member 9 isoform b [Homo
sapiens]
Length = 1163
Score = 32.3 bits (72), Expect = 0.34
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 69 ISWRRGHFHGQSF--YSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQSVYFCR 126
I W R F F + P I DYV R+ L Q+ L+I LR EDQ Y CR
Sbjct: 55 IEWLRFGFLLPIFIQFGLYSPRIDPDYVGRVRL-----QKGASLQIEGLRVEDQGWYECR 109
Query: 127 V 127
V
Sbjct: 110 V 110
>gi|239758119 PREDICTED: similar to hCG2042717 [Homo sapiens]
Length = 196
Score = 31.6 bits (70), Expect = 0.58
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 53 FSFYYPWELAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRI 112
FS YY + P + W + S Y+ S+ R ++ + S +L++
Sbjct: 58 FSDYYMSWIRQAPGKGLEWV-SYISSSSSYTNYADSVK----GRFTISRDNAKNSLYLQM 112
Query: 113 SNLRKEDQSVYFCRVELDTRRSGR 136
++LR ED +VY+C DT R G+
Sbjct: 113 NSLRAEDTAVYYC--ARDTVRGGQ 134
>gi|239745042 PREDICTED: similar to hCG2003024 [Homo sapiens]
Length = 181
Score = 31.6 bits (70), Expect = 0.58
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 96 RLFLNWTEGQESGFLRISNLRKEDQSVYFCRVELDTRRSGRQQ 138
RL ++ + + + +L++SNL+ ED +VY+C DT R G+++
Sbjct: 88 RLTISREDSKNTLYLQMSNLKTEDLAVYYC--ARDTVRGGQRE 128
>gi|5031913 melan-A [Homo sapiens]
Length = 118
Score = 31.2 bits (69), Expect = 0.76
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 176 KGHSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWW-RRRKGSRA 222
KGH S+ T A + +L TVILG+L L+ W+ RRR G RA
Sbjct: 15 KGHGHSY-----TTAEEAAGIGIL-TVILGVLLLIGCWYCRRRNGYRA 56
>gi|47106069 sialic acid binding Ig-like lectin 15 [Homo sapiens]
Length = 328
Score = 31.2 bits (69), Expect = 0.76
Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 18/137 (13%)
Query: 27 SGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWELAIVPNVRISWRRGH-FHGQSFYSTR 85
S P+ + + P +SA G + +P +F +P P I WR G + G +
Sbjct: 38 SSPAQRWSMQVPPEVSAEAGDAAVLPCTFTHPHRHYDGPLTAI-WRAGEPYAGPQVFRCA 96
Query: 86 PP----------SIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQSVYFCRVELDTRRSG 135
S+H + RL N S LR+ L D YFCRVE
Sbjct: 97 AARGSELCQTALSLHGRF--RLLGNPRRNDLS--LRVERLALADDRRYFCRVEF--AGDV 150
Query: 136 RQQLQSIKGTKLTITQA 152
+ +S G +L +T A
Sbjct: 151 HDRYESRHGVRLHVTAA 167
>gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precursor
[Homo sapiens]
Length = 837
Score = 30.8 bits (68), Expect = 0.99
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 149 ITQAVTTTTTWRPSSTTTIAGLRVTESKGHSESWHLSLDTAIRVALAVAVLKTVILGLLC 208
++ VT T S +A L ES +SE+ LSL + VA + ++ LL
Sbjct: 655 LSATVTLTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLA 714
Query: 209 LLLLWWRRRK 218
L L W + +
Sbjct: 715 LRLWRWHKSR 724
>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
[Homo sapiens]
Length = 935
Score = 30.8 bits (68), Expect = 0.99
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 149 ITQAVTTTTTWRPSSTTTIAGLRVTESKGHSESWHLSLDTAIRVALAVAVLKTVILGLLC 208
++ VT T S +A L ES +SE+ LSL + VA + ++ LL
Sbjct: 655 LSATVTLTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLA 714
Query: 209 LLLLWWRRRK 218
L L W + +
Sbjct: 715 LRLWRWHKSR 724
>gi|157384977 glutamate receptor, ionotropic, delta 2 [Homo sapiens]
Length = 1007
Score = 30.4 bits (67), Expect = 1.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 202 VILGLLCLLLLWWRRRKGSRAPSSD 226
V+ + +L WW +RKGSR PS +
Sbjct: 843 VLSCFIAMLETWWNKRKGSRVPSKE 867
>gi|226529863 T-cell immunoglobulin and mucin domain containing 4
isoform 1 [Homo sapiens]
Length = 378
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 110 LRISNLRKEDQSVYFCRVEL-----DTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSST 164
L I N + D VY CR+E+ D + + R LQ T T TTTT R ++T
Sbjct: 97 LTILNPSESDSGVYCCRIEVPGWFNDVKINVRLNLQRAS----TTTHRTATTTTRRTTTT 152
Query: 165 TTIAGLRVT 173
+ ++T
Sbjct: 153 SPTTTRQMT 161
>gi|226498466 T-cell immunoglobulin and mucin domain containing 4
isoform 2 [Homo sapiens]
Length = 350
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 110 LRISNLRKEDQSVYFCRVEL-----DTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSST 164
L I N + D VY CR+E+ D + + R LQ T T TTTT R ++T
Sbjct: 97 LTILNPSESDSGVYCCRIEVPGWFNDVKINVRLNLQRAS----TTTHRTATTTTRRTTTT 152
Query: 165 TTIAGLRVT 173
+ ++T
Sbjct: 153 SPTTTRQMT 161
>gi|9507239 immunoglobulin iota chain precursor [Homo sapiens]
Length = 145
Score = 30.0 bits (66), Expect = 1.7
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 25 TGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWELAIVPNVRISWRRGHFHG--QSFY 82
TG GP + + QP +S+++G ++ + + ++ + R GH ++
Sbjct: 15 TGCGPQPV--LHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYF 72
Query: 83 STRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQSVYFC 125
S S R + + G+L IS L+ ED+++Y+C
Sbjct: 73 SQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYC 115
>gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens]
Length = 651
Score = 29.6 bits (65), Expect = 2.2
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 62 AIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQS 121
+++P I W RG GQ + P H V + +RIS++ ED
Sbjct: 540 SLLPVGPIQWFRGACPGQKLIYS-PKRCHSPRVTTISDQRKRNSTDYSIRISSITLEDAG 598
Query: 122 VYFCRVELDTRRSGRQQLQSIKGTKLTI 149
Y+C ++L +++S GT++++
Sbjct: 599 TYYC-MKLRRAIPANVEIKSGPGTQMSV 625
>gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo
sapiens]
Length = 651
Score = 29.6 bits (65), Expect = 2.2
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 62 AIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQS 121
+++P I W RG GQ + P H V + +RIS++ ED
Sbjct: 540 SLLPVGPIQWFRGACPGQKLIYS-PKRCHSPRVTTISDQRKRNSTDYSIRISSITLEDAG 598
Query: 122 VYFCRVELDTRRSGRQQLQSIKGTKLTI 149
Y+C ++L +++S GT++++
Sbjct: 599 TYYC-MKLRRAIPANVEIKSGPGTQMSV 625
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,389,875
Number of Sequences: 37866
Number of extensions: 409771
Number of successful extensions: 1957
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1873
Number of HSP's gapped (non-prelim): 121
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.