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Search of human proteins with 29837655
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29837655 DNA polymerase delta interacting protein 3 isoform
1 [Homo sapiens]
(421 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29837655 DNA polymerase delta interacting protein 3 isoform 1... 823 0.0
gi|30089919 DNA polymerase delta interacting protein 3 isoform 2... 747 0.0
gi|238776833 THO complex 4 [Homo sapiens] 53 5e-07
gi|21450675 RNA binding motif protein 46 [Homo sapiens] 41 0.002
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 40 0.004
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 40 0.004
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 40 0.004
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 38 0.015
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 38 0.015
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 38 0.020
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 38 0.020
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 38 0.020
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 38 0.020
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 38 0.020
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 38 0.020
gi|33620747 myelin expression factor 2 [Homo sapiens] 34 0.22
gi|239745083 PREDICTED: similar to Golgin subfamily A member 8-l... 33 0.37
gi|20357578 apobec-1 complementation factor isoform 3 [Homo sapi... 33 0.37
gi|20357575 apobec-1 complementation factor isoform 2 [Homo sapi... 33 0.37
gi|20357572 apobec-1 complementation factor isoform 1 [Homo sapi... 33 0.37
gi|150170670 piccolo isoform 2 [Homo sapiens] 33 0.49
gi|150378539 piccolo isoform 1 [Homo sapiens] 33 0.49
gi|239745085 PREDICTED: similar to Golgin subfamily A member 8-l... 33 0.63
gi|171543895 ataxin 2 [Homo sapiens] 33 0.63
gi|183396783 BCL-6 interacting corepressor isoform a [Homo sapiens] 32 0.83
gi|183396787 BCL-6 interacting corepressor isoform c [Homo sapiens] 32 0.83
gi|183396785 BCL-6 interacting corepressor isoform b [Homo sapiens] 32 0.83
gi|21071037 BCL-6 interacting corepressor isoform a [Homo sapiens] 32 0.83
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s... 32 0.83
gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo ... 32 0.83
>gi|29837655 DNA polymerase delta interacting protein 3 isoform 1
[Homo sapiens]
Length = 421
Score = 823 bits (2126), Expect = 0.0
Identities = 421/421 (100%), Positives = 421/421 (100%)
Query: 1 MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI 60
MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI
Sbjct: 1 MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI 60
Query: 61 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK 120
GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK
Sbjct: 61 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK 120
Query: 121 ISLKRSSPAAFINPPIGTVTPALKLTKTIQVPQQKAMAPLHPHPAGMRINVVNNHQAKQN 180
ISLKRSSPAAFINPPIGTVTPALKLTKTIQVPQQKAMAPLHPHPAGMRINVVNNHQAKQN
Sbjct: 121 ISLKRSSPAAFINPPIGTVTPALKLTKTIQVPQQKAMAPLHPHPAGMRINVVNNHQAKQN 180
Query: 181 LYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPA 240
LYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPA
Sbjct: 181 LYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPA 240
Query: 241 LPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELF 300
LPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELF
Sbjct: 241 LPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELF 300
Query: 301 CVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQP 360
CVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQP
Sbjct: 301 CVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQP 360
Query: 361 ILLRLSDSPSMKKESELPRRVNSASSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIK 420
ILLRLSDSPSMKKESELPRRVNSASSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIK
Sbjct: 361 ILLRLSDSPSMKKESELPRRVNSASSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIK 420
Query: 421 L 421
L
Sbjct: 421 L 421
>gi|30089919 DNA polymerase delta interacting protein 3 isoform 2
[Homo sapiens]
Length = 392
Score = 747 bits (1929), Expect = 0.0
Identities = 392/421 (93%), Positives = 392/421 (93%), Gaps = 29/421 (6%)
Query: 1 MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI 60
MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI
Sbjct: 1 MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI 60
Query: 61 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK 120
GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK
Sbjct: 61 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK 120
Query: 121 ISLKRSSPAAFINPPIGTVTPALKLTKTIQVPQQKAMAPLHPHPAGMRINVVNNHQAKQN 180
ISLKRSSPAAFINPPIGTVTPALKLTKTIQ N
Sbjct: 121 ISLKRSSPAAFINPPIGTVTPALKLTKTIQ-----------------------------N 151
Query: 181 LYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPA 240
LYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPA
Sbjct: 152 LYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPA 211
Query: 241 LPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELF 300
LPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELF
Sbjct: 212 LPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELF 271
Query: 301 CVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQP 360
CVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQP
Sbjct: 272 CVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQP 331
Query: 361 ILLRLSDSPSMKKESELPRRVNSASSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIK 420
ILLRLSDSPSMKKESELPRRVNSASSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIK
Sbjct: 332 ILLRLSDSPSMKKESELPRRVNSASSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIK 391
Query: 421 L 421
L
Sbjct: 392 L 392
>gi|238776833 THO complex 4 [Homo sapiens]
Length = 264
Score = 53.1 bits (126), Expect = 5e-07
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 279 GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDAITAYK 332
G K+ V+NL V++ DI ELF G LK+A + + G A+V F +K DA+ A K
Sbjct: 112 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMK 171
Query: 333 KYNNRCLDGQPMKCNL 348
+YN LDG+PM L
Sbjct: 172 QYNGVPLDGRPMNIQL 187
>gi|21450675 RNA binding motif protein 46 [Homo sapiens]
Length = 533
Score = 41.2 bits (95), Expect = 0.002
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 19/125 (15%)
Query: 284 VNNLHPRVTEEDIVELFCVC--GALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDG 341
V NL TEE I F GA++R + + A V F ++DA+ A N +C+DG
Sbjct: 240 VRNLMISTTEETIKAEFNKFKPGAVERVKKLRD-YAFVHFFNREDAVAAMSVMNGKCIDG 298
Query: 342 QPMKCNL------------HMNGNVITSDQPILL----RLSDSPSMKKESELPRRVNSAS 385
++ L H+NG + + + +++ S ++ K LP R+N
Sbjct: 299 ASIEVTLAKPVNKENTWRQHLNGQISPNSENLIVFANKEESHPKTLGKLPTLPARLNGQH 358
Query: 386 SSNPP 390
S +PP
Sbjct: 359 SPSPP 363
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 40.0 bits (92), Expect = 0.004
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 278 EGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP---------GVAEVVFVKKDDAI 328
E ++ V NL TEED+ +LF G L + L +P G A + F+ + A+
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPL--SELHYPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 329 TAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSN 388
AY + + + G+ LH+ + I + S S KK+ E + NSASS N
Sbjct: 458 KAYSEVDGQVFQGR----MLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASSHN 513
Score = 28.9 bits (63), Expect = 9.2
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 252 NMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRAR- 310
N S + +EE +E + P G + + NL+ TEE + E+F G +K
Sbjct: 708 NSSAKMEEEEEEEEEEEESLP------GCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSI 761
Query: 311 ---------LVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNL 348
L+ G V + K + A A K+ +DG ++ +
Sbjct: 762 SKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRI 808
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 40.0 bits (92), Expect = 0.004
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 278 EGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP---------GVAEVVFVKKDDAI 328
E ++ V NL TEED+ +LF G L + L +P G A + F+ + A+
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPL--SELHYPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 329 TAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSN 388
AY + + + G+ LH+ + I + S S KK+ E + NSASS N
Sbjct: 458 KAYSEVDGQVFQGR----MLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASSHN 513
Score = 28.9 bits (63), Expect = 9.2
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 252 NMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRAR- 310
N S + +EE +E + P G + + NL+ TEE + E+F G +K
Sbjct: 708 NSSAKMEEEEEEEEEEEESLP------GCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSI 761
Query: 311 ---------LVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNL 348
L+ G V + K + A A K+ +DG ++ +
Sbjct: 762 SKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRI 808
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 40.0 bits (92), Expect = 0.004
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 278 EGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP---------GVAEVVFVKKDDAI 328
E ++ V NL TEED+ +LF G L + L +P G A + F+ + A+
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPL--SELHYPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 329 TAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSN 388
AY + + + G+ LH+ + I + S S KK+ E + NSASS N
Sbjct: 458 KAYSEVDGQVFQGR----MLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASSHN 513
Score = 28.9 bits (63), Expect = 9.2
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 252 NMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRAR- 310
N S + +EE +E + P G + + NL+ TEE + E+F G +K
Sbjct: 708 NSSAKMEEEEEEEEEEEESLP------GCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSI 761
Query: 311 ---------LVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNL 348
L+ G V + K + A A K+ +DG ++ +
Sbjct: 762 SKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRI 808
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 38.1 bits (87), Expect = 0.015
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 190 GIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKA 249
G +S ++ ++SG + SS S S + ++ + ++ + S +
Sbjct: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
Query: 250 LTNMSRTLVNKEEPPKELPAAEPVLSPL-EGTKMTVNNLHPRVTEEDIVELFCVCGALKR 308
N R+ +K +PPK SP + TK+ + L VT++ I+E+F G +K
Sbjct: 131 HDNRRRSR-SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
Query: 309 ARL----VHP----GVAEVVFVKKDDAITAYKKYNNRCLDGQ 342
+ +HP G A V F D+A A K + +DGQ
Sbjct: 190 IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ 231
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 38.1 bits (87), Expect = 0.015
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 190 GIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKA 249
G +S ++ ++SG + SS S S + ++ + ++ + S +
Sbjct: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
Query: 250 LTNMSRTLVNKEEPPKELPAAEPVLSPL-EGTKMTVNNLHPRVTEEDIVELFCVCGALKR 308
N R+ +K +PPK SP + TK+ + L VT++ I+E+F G +K
Sbjct: 131 HDNRRRSR-SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
Query: 309 ARL----VHP----GVAEVVFVKKDDAITAYKKYNNRCLDGQ 342
+ +HP G A V F D+A A K + +DGQ
Sbjct: 190 IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ 231
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 37.7 bits (86), Expect = 0.020
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 20/210 (9%)
Query: 190 GIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKA 249
G +S ++ ++SG + SS S S + ++ + ++ + S +
Sbjct: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
Query: 250 LTNMSRTLVNKEEPPKELPAAEPVLSPL-EGTKMTVNNLHPRVTEEDIVELFCVCGALKR 308
N R+ +K +PPK SP + TK+ + L VT++ I+E+F G +K
Sbjct: 131 HDNRRRSR-SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
Query: 309 ARL----VHP----GVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQ- 359
+ +HP G A V F D+A A K + +DGQ + + + + +
Sbjct: 190 IDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRR 249
Query: 360 ---------PILLRLSDSPSMKKESELPRR 380
P + L P M++ S PRR
Sbjct: 250 FSPPRRMLPPPPMWLRSPPRMRRRSRSPRR 279
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 37.7 bits (86), Expect = 0.020
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 20/210 (9%)
Query: 190 GIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKA 249
G +S ++ ++SG + SS S S + ++ + ++ + S +
Sbjct: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
Query: 250 LTNMSRTLVNKEEPPKELPAAEPVLSPL-EGTKMTVNNLHPRVTEEDIVELFCVCGALKR 308
N R+ +K +PPK SP + TK+ + L VT++ I+E+F G +K
Sbjct: 131 HDNRRRSR-SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
Query: 309 ARL----VHP----GVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQ- 359
+ +HP G A V F D+A A K + +DGQ + + + + +
Sbjct: 190 IDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRR 249
Query: 360 ---------PILLRLSDSPSMKKESELPRR 380
P + L P M++ S PRR
Sbjct: 250 FSPPRRMLPPPPMWLRSPPRMRRRSRSPRR 279
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 37.7 bits (86), Expect = 0.020
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 20/210 (9%)
Query: 190 GIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKA 249
G +S ++ ++SG + SS S S + ++ + ++ + S +
Sbjct: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
Query: 250 LTNMSRTLVNKEEPPKELPAAEPVLSPL-EGTKMTVNNLHPRVTEEDIVELFCVCGALKR 308
N R+ +K +PPK SP + TK+ + L VT++ I+E+F G +K
Sbjct: 131 HDNRRRSR-SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
Query: 309 ARL----VHP----GVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQ- 359
+ +HP G A V F D+A A K + +DGQ + + + + +
Sbjct: 190 IDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRR 249
Query: 360 ---------PILLRLSDSPSMKKESELPRR 380
P + L P M++ S PRR
Sbjct: 250 FSPPRRMLPPPPMWLRSPPRMRRRSRSPRR 279
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 37.7 bits (86), Expect = 0.020
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 20/210 (9%)
Query: 190 GIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKA 249
G +S ++ ++SG + SS S S + ++ + ++ + S +
Sbjct: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
Query: 250 LTNMSRTLVNKEEPPKELPAAEPVLSPL-EGTKMTVNNLHPRVTEEDIVELFCVCGALKR 308
N R+ +K +PPK SP + TK+ + L VT++ I+E+F G +K
Sbjct: 131 HDNRRRSR-SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
Query: 309 ARL----VHP----GVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQ- 359
+ +HP G A V F D+A A K + +DGQ + + + + +
Sbjct: 190 IDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRR 249
Query: 360 ---------PILLRLSDSPSMKKESELPRR 380
P + L P M++ S PRR
Sbjct: 250 FSPPRRMLPPPPMWLRSPPRMRRRSRSPRR 279
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 37.7 bits (86), Expect = 0.020
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 20/210 (9%)
Query: 190 GIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKA 249
G +S ++ ++SG + SS S S + ++ + ++ + S +
Sbjct: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
Query: 250 LTNMSRTLVNKEEPPKELPAAEPVLSPL-EGTKMTVNNLHPRVTEEDIVELFCVCGALKR 308
N R+ +K +PPK SP + TK+ + L VT++ I+E+F G +K
Sbjct: 131 HDNRRRSR-SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
Query: 309 ARL----VHP----GVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQ- 359
+ +HP G A V F D+A A K + +DGQ + + + + +
Sbjct: 190 IDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRR 249
Query: 360 ---------PILLRLSDSPSMKKESELPRR 380
P + L P M++ S PRR
Sbjct: 250 FSPPRRMLPPPPMWLRSPPRMRRRSRSPRR 279
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 37.7 bits (86), Expect = 0.020
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 20/210 (9%)
Query: 190 GIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKA 249
G +S ++ ++SG + SS S S + ++ + ++ + S +
Sbjct: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
Query: 250 LTNMSRTLVNKEEPPKELPAAEPVLSPL-EGTKMTVNNLHPRVTEEDIVELFCVCGALKR 308
N R+ +K +PPK SP + TK+ + L VT++ I+E+F G +K
Sbjct: 131 HDNRRRSR-SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
Query: 309 ARL----VHP----GVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQ- 359
+ +HP G A V F D+A A K + +DGQ + + + + +
Sbjct: 190 IDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRR 249
Query: 360 ---------PILLRLSDSPSMKKESELPRR 380
P + L P M++ S PRR
Sbjct: 250 FSPPRRMLPPPPMWLRSPPRMRRRSRSPRR 279
>gi|33620747 myelin expression factor 2 [Homo sapiens]
Length = 600
Score = 34.3 bits (77), Expect = 0.22
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 250 LTNMSRTLVNKEEPPKELPAAEPVLSPLE----GTKMTVNNLHPRVTEEDIVELFCVCGA 305
L N+ +++N P E V+S L+ G+ + V NL +V + + E+F + G
Sbjct: 205 LMNLPPSILNNPNIPPE------VISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGT 258
Query: 306 LKRARLVHP------GVAEVVFVKKDDAITAYKKYNNRCLDGQPM 344
+KRA + G+ V F + +A+ A +N + L +PM
Sbjct: 259 VKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPM 303
>gi|239745083 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 4 [Homo sapiens]
Length = 590
Score = 33.5 bits (75), Expect = 0.37
Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 36/193 (18%)
Query: 38 QGLLSQSTRTA-TFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDARE 96
Q L + R A Q + + Q+I L + K +++ +E+L +++ R + + Q++ +
Sbjct: 301 QHLRKELERVAGALQAQVEYNQRISLLNEGQKERLREQQERLPEQEERLQQLAEPQNSFK 360
Query: 97 MLNSRKQQTTVPQKPRQVADAREKISLKRSSPAAFINPPIGTVTPALKLTKTIQVPQQKA 156
LN+ + +V Q +QV + +EK+ + + T TP+ K + A
Sbjct: 361 ELNN--ENKSVLQLEQQVKELQEKLGKVKETV---------TSTPSKK-------EPEAA 402
Query: 157 MAPLHPHPAGMRINVVNNHQAKQNLYDLDEDDD----------------GIASVPTKQMK 200
P P P G + +++ + K +L +L + + + S P + K
Sbjct: 403 RGPGAPGPGGESSSFMDHLEEKADLSELVKKQELRFIQYWQERCHQKIHHLLSEPGGRAK 462
Query: 201 FAASGGFLHHMAG 213
AA GG HH AG
Sbjct: 463 DAALGGG-HHQAG 474
>gi|20357578 apobec-1 complementation factor isoform 3 [Homo
sapiens]
Length = 594
Score = 33.5 bits (75), Expect = 0.37
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 270 AEPVLSPLEGTKMTVNNLHPR-----VTEEDIVELF--CVCGALKRARLVHPGVAEVVFV 322
AEP + E T +V L+ R +EE I + F GA++R + + A V F
Sbjct: 224 AEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD-YAFVHFS 282
Query: 323 KKDDAITAYKKYNNRCLDGQPMKCNL 348
++DA+ A K N + LDG P++ L
Sbjct: 283 NREDAVEAMKALNGKVLDGSPIEVTL 308
>gi|20357575 apobec-1 complementation factor isoform 2 [Homo
sapiens]
Length = 594
Score = 33.5 bits (75), Expect = 0.37
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 270 AEPVLSPLEGTKMTVNNLHPR-----VTEEDIVELF--CVCGALKRARLVHPGVAEVVFV 322
AEP + E T +V L+ R +EE I + F GA++R + + A V F
Sbjct: 216 AEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD-YAFVHFS 274
Query: 323 KKDDAITAYKKYNNRCLDGQPMKCNL 348
++DA+ A K N + LDG P++ L
Sbjct: 275 NREDAVEAMKALNGKVLDGSPIEVTL 300
>gi|20357572 apobec-1 complementation factor isoform 1 [Homo
sapiens]
Length = 586
Score = 33.5 bits (75), Expect = 0.37
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 270 AEPVLSPLEGTKMTVNNLHPR-----VTEEDIVELF--CVCGALKRARLVHPGVAEVVFV 322
AEP + E T +V L+ R +EE I + F GA++R + + A V F
Sbjct: 216 AEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD-YAFVHFS 274
Query: 323 KKDDAITAYKKYNNRCLDGQPMKCNL 348
++DA+ A K N + LDG P++ L
Sbjct: 275 NREDAVEAMKALNGKVLDGSPIEVTL 300
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 33.1 bits (74), Expect = 0.49
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 214 LSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKALTNMSRTLVNKEEPPKELPAAEPV 273
L ++ + S LP+T++ P PSSI + + ++ EP K A +PV
Sbjct: 2462 LETTAVLRSNGLPVTRICTTAPPPVPPKPSSIPSGLV------FTHRPEPSKPPIAPKPV 2515
Query: 274 LSPLEGTKMTVNNLHPRVT 292
+ L T ++HP+ T
Sbjct: 2516 IPQLPTTTQKPTDIHPKPT 2534
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 33.1 bits (74), Expect = 0.49
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 214 LSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKALTNMSRTLVNKEEPPKELPAAEPV 273
L ++ + S LP+T++ P PSSI + + ++ EP K A +PV
Sbjct: 2462 LETTAVLRSNGLPVTRICTTAPPPVPPKPSSIPSGLV------FTHRPEPSKPPIAPKPV 2515
Query: 274 LSPLEGTKMTVNNLHPRVT 292
+ L T ++HP+ T
Sbjct: 2516 IPQLPTTTQKPTDIHPKPT 2534
>gi|239745085 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 3 [Homo sapiens]
Length = 601
Score = 32.7 bits (73), Expect = 0.63
Identities = 42/193 (21%), Positives = 82/193 (42%), Gaps = 37/193 (19%)
Query: 38 QGLLSQSTRTA-TFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDARE 96
Q L + R A Q + + Q+I L + K +++ +E+L +++ R + + Q++ +
Sbjct: 313 QHLRKELERVAGALQAQVEYNQRISLLNEGQKERLREQQERLPEQEERLQQLAEPQNSFK 372
Query: 97 MLNSRKQQTTVPQKPRQVADAREKISLKRSSPAAFINPPIGTVTPALKLTKTIQVPQQKA 156
LN+ + +V Q +QV + +EK+ + + L + Q + A
Sbjct: 373 ELNN--ENKSVLQLEQQVKELQEKLGKRLA-----------------HLVASAQKEPEAA 413
Query: 157 MAPLHPHPAGMRINVVNNHQAKQNLYDLDEDDD----------------GIASVPTKQMK 200
P P P G + +++ + K +L +L + + + S P + K
Sbjct: 414 RGPGAPGPGGESSSFMDHLEEKADLSELVKKQELRFIQYWQERCHQKIHHLLSEPGGRAK 473
Query: 201 FAASGGFLHHMAG 213
AA GG HH AG
Sbjct: 474 DAALGGG-HHQAG 485
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 32.7 bits (73), Expect = 0.63
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 98 LNSRKQQTTVPQKPRQVADAREKISLKRSSPAAFINPPIGTVTPALKLTKTIQVPQQKAM 157
+N K VP P+Q D + ++ PA+ PPI PA PQQ
Sbjct: 991 VNQAKTYRAVPNMPQQRQDQHHQSAMMH--PASAAGPPIAATPPAYSTQYVAYSPQQFPN 1048
Query: 158 APLHPH 163
PL H
Sbjct: 1049 QPLVQH 1054
>gi|183396783 BCL-6 interacting corepressor isoform a [Homo sapiens]
Length = 1721
Score = 32.3 bits (72), Expect = 0.83
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 56 ARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVA 115
A + +G S K V+ A ++ A G++ D E ++ TV +
Sbjct: 827 AAESVGQSAEPPKPSVEPALQQHRDFIALREELGRISDFHETYTFKQPVFTVSKDSVLAG 886
Query: 116 DAREKISLKRSSPAAFINPPIGTVTPALKLTKTIQVPQ 153
+E + L S+P F+ PP+G+ PA+ KT + P+
Sbjct: 887 TNKENLGLPVSTP--FLEPPLGSDGPAVTFGKTQEDPK 922
>gi|183396787 BCL-6 interacting corepressor isoform c [Homo sapiens]
Length = 1755
Score = 32.3 bits (72), Expect = 0.83
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 56 ARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVA 115
A + +G S K V+ A ++ A G++ D E ++ TV +
Sbjct: 827 AAESVGQSAEPPKPSVEPALQQHRDFIALREELGRISDFHETYTFKQPVFTVSKDSVLAG 886
Query: 116 DAREKISLKRSSPAAFINPPIGTVTPALKLTKTIQVPQ 153
+E + L S+P F+ PP+G+ PA+ KT + P+
Sbjct: 887 TNKENLGLPVSTP--FLEPPLGSDGPAVTFGKTQEDPK 922
>gi|183396785 BCL-6 interacting corepressor isoform b [Homo sapiens]
Length = 1703
Score = 32.3 bits (72), Expect = 0.83
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 56 ARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVA 115
A + +G S K V+ A ++ A G++ D E ++ TV +
Sbjct: 827 AAESVGQSAEPPKPSVEPALQQHRDFIALREELGRISDFHETYTFKQPVFTVSKDSVLAG 886
Query: 116 DAREKISLKRSSPAAFINPPIGTVTPALKLTKTIQVPQ 153
+E + L S+P F+ PP+G+ PA+ KT + P+
Sbjct: 887 TNKENLGLPVSTP--FLEPPLGSDGPAVTFGKTQEDPK 922
>gi|21071037 BCL-6 interacting corepressor isoform a [Homo sapiens]
Length = 1721
Score = 32.3 bits (72), Expect = 0.83
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 56 ARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVA 115
A + +G S K V+ A ++ A G++ D E ++ TV +
Sbjct: 827 AAESVGQSAEPPKPSVEPALQQHRDFIALREELGRISDFHETYTFKQPVFTVSKDSVLAG 886
Query: 116 DAREKISLKRSSPAAFINPPIGTVTPALKLTKTIQVPQ 153
+E + L S+P F+ PP+G+ PA+ KT + P+
Sbjct: 887 TNKENLGLPVSTP--FLEPPLGSDGPAVTFGKTQEDPK 922
>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
sapiens]
Length = 370
Score = 32.3 bits (72), Expect = 0.83
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 278 EGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP-----GVAEVVFVKKDDAITAYK 332
+G K+ + NL + +E + F G++ R +++ G + F +DA A
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMT 350
Query: 333 KYNNRCLDGQPMKCNL 348
+ N R L +P+ L
Sbjct: 351 EMNGRILGSKPLSIAL 366
>gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo
sapiens]
Length = 217
Score = 32.3 bits (72), Expect = 0.83
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 274 LSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP-------GVAEVVFVKKDD 326
L+P + T + V+NL +T D+ +F G + + ++ GVA ++F+ KD
Sbjct: 5 LAPSKST-VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDS 63
Query: 327 AITAYKKYNNRCLDGQPMKCNL 348
A + NN+ L G+ +K ++
Sbjct: 64 AQNCTRAINNKQLFGRVIKASI 85
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,428,009
Number of Sequences: 37866
Number of extensions: 708361
Number of successful extensions: 2857
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 2816
Number of HSP's gapped (non-prelim): 98
length of query: 421
length of database: 18,247,518
effective HSP length: 105
effective length of query: 316
effective length of database: 14,271,588
effective search space: 4509821808
effective search space used: 4509821808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.