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Search of human proteins with 122937209
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122937209 hypothetical protein LOC728858 [Homo sapiens]
(269 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937209 hypothetical protein LOC728858 [Homo sapiens] 554 e-158
gi|38569491 serine/threonine-protein kinase QSK [Homo sapiens] 32 0.76
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 31 0.99
gi|156104891 general transcription factor IIF, polypeptide 1, 74... 31 0.99
gi|24308113 KIF1 binding protein [Homo sapiens] 31 0.99
gi|226423889 myocardin isoform 1 [Homo sapiens] 30 1.7
gi|23957692 myocardin isoform 2 [Homo sapiens] 30 1.7
gi|226423891 myocardin isoform 3 [Homo sapiens] 30 1.7
gi|111118961 sorting nexin 21 isoform d [Homo sapiens] 30 2.2
gi|15553099 sorting nexin 21 isoform a [Homo sapiens] 30 2.2
gi|111118959 sorting nexin 21 isoform c [Homo sapiens] 30 2.2
gi|23510350 sorting nexin 21 isoform b [Homo sapiens] 30 2.2
gi|195963418 tubulin tyrosine ligase-like family, member 6 isofo... 30 2.9
gi|195963416 tubulin tyrosine ligase-like family, member 6 isofo... 30 2.9
gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [H... 29 3.8
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 29 3.8
gi|158534077 regulator of G-protein signaling 22 [Homo sapiens] 29 3.8
gi|81295809 pericentrin [Homo sapiens] 29 4.9
gi|66932918 MER receptor tyrosine kinase precursor [Homo sapiens] 29 4.9
gi|38016947 complement component 5 preproprotein [Homo sapiens] 28 8.4
gi|115495445 ankyrin repeat domain 30A [Homo sapiens] 28 8.4
gi|138175817 zinc finger protein 236 [Homo sapiens] 28 8.4
>gi|122937209 hypothetical protein LOC728858 [Homo sapiens]
Length = 269
Score = 554 bits (1428), Expect = e-158
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MAYSSSNSDIEDDSSKSNSNLSLSVGYFPCEDTPCEDTTSWEDAPSKGPSIHFLPPVQGA 60
MAYSSSNSDIEDDSSKSNSNLSLSVGYFPCEDTPCEDTTSWEDAPSKGPSIHFLPPVQGA
Sbjct: 1 MAYSSSNSDIEDDSSKSNSNLSLSVGYFPCEDTPCEDTTSWEDAPSKGPSIHFLPPVQGA 60
Query: 61 WGTERIGRRMKRQDQIQDEPEQFCKLSIFLAWDVDIGSDNTDSRANRLLNGDNLWIDKLP 120
WGTERIGRRMKRQDQIQDEPEQFCKLSIFLAWDVDIGSDNTDSRANRLLNGDNLWIDKLP
Sbjct: 61 WGTERIGRRMKRQDQIQDEPEQFCKLSIFLAWDVDIGSDNTDSRANRLLNGDNLWIDKLP 120
Query: 121 KERTKLSVGKLNNLVQEFQIFLENLKDDDAVFPETAQQDFQLSSGSPPEMVQMISQATAS 180
KERTKLSVGKLNNLVQEFQIFLENLKDDDAVFPETAQQDFQLSSGSPPEMVQMISQATAS
Sbjct: 121 KERTKLSVGKLNNLVQEFQIFLENLKDDDAVFPETAQQDFQLSSGSPPEMVQMISQATAS 180
Query: 181 QRTSAPEISSILSEQPEKDDTPSHTQAQCCLNFGWAFSWLRQRILPSLLRRDHPVNATKS 240
QRTSAPEISSILSEQPEKDDTPSHTQAQCCLNFGWAFSWLRQRILPSLLRRDHPVNATKS
Sbjct: 181 QRTSAPEISSILSEQPEKDDTPSHTQAQCCLNFGWAFSWLRQRILPSLLRRDHPVNATKS 240
Query: 241 PHRSAPTKRLFHRGKRIQPQETLELGHPI 269
PHRSAPTKRLFHRGKRIQPQETLELGHPI
Sbjct: 241 PHRSAPTKRLFHRGKRIQPQETLELGHPI 269
>gi|38569491 serine/threonine-protein kinase QSK [Homo sapiens]
Length = 1263
Score = 31.6 bits (70), Expect = 0.76
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 160 FQLSSGSPPEM----VQMISQATASQRTSAPEISSILSEQPEKDDTPSHTQAQC 209
F+ S SPP M +Q A++SQ P S+I +QPE +P + C
Sbjct: 684 FRQPSNSPPPMSSAMIQPHGAASSSQFQGLPSRSAIFQQQPENCSSPPNVALTC 737
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 31.2 bits (69), Expect = 0.99
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 4 SSSNSDIEDDSSKSNSNLSLSVGYFPCEDTPCEDTTSWEDAPSKGPSIHFLPPVQ 58
SSS+S SS S+S+ S S ED+ C AP+ GPS P +
Sbjct: 2648 SSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAALPTK 2702
>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
[Homo sapiens]
Length = 517
Score = 31.2 bits (69), Expect = 0.99
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 31/158 (19%)
Query: 68 RRMKRQDQIQDEPE-------QFCKLSIF-LAWDVDIGSDNTDSRANRLLNGDNLWIDKL 119
RR+K QDQ +DE E + +L I L D+++ SD +D+ ++
Sbjct: 180 RRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEE--------GGRV 231
Query: 120 PKERTKLSVGKLNNLVQEFQIFLENLKDDDAVFPETAQQDFQ------LSSGSPPEMVQM 173
PK + K + K + + DD F ++ DF+ +S GS +
Sbjct: 232 PKAKKKAPLAKGGRKKK------KKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEP 285
Query: 174 ISQATASQRTSAP---EISSILSEQPEKDDTPSHTQAQ 208
S+A A Q+ P + S SE+ E++ P + +
Sbjct: 286 ESKAKAPQQEEGPKGVDEQSDSSEESEEEKPPEEDKEE 323
>gi|24308113 KIF1 binding protein [Homo sapiens]
Length = 621
Score = 31.2 bits (69), Expect = 0.99
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
Query: 128 VGKLNNL----VQEFQIFLENLKDDDAVFPETAQQD 159
V K+NNL ++ +Q+FL++L+D + VFPE +D
Sbjct: 503 VKKINNLNKSALKYYQLFLDSLRDPNKVFPEHIGED 538
>gi|226423889 myocardin isoform 1 [Homo sapiens]
Length = 986
Score = 30.4 bits (67), Expect = 1.7
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 108 LLNGDNLWIDKLPKERTKLSVGKLNNLVQEFQIFLENLKDDDAVFPETAQQDFQLSSGSP 167
L+ + L +D KE K + + F F E+ D +T +D Q S+GSP
Sbjct: 121 LVEKNILPVDSAVKEAIKGNQVSFSKSTDAFA-FEEDSSSDGLSPDQTRSEDPQNSAGSP 179
Query: 168 PEMVQMISQATASQRTSAPEISSILSEQPEKDDTPSH 204
P+ + +T S T+ S +++ + PSH
Sbjct: 180 PDAKASDTPSTGSLGTNQDLASGSENDRNDSASQPSH 216
>gi|23957692 myocardin isoform 2 [Homo sapiens]
Length = 938
Score = 30.4 bits (67), Expect = 1.7
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 108 LLNGDNLWIDKLPKERTKLSVGKLNNLVQEFQIFLENLKDDDAVFPETAQQDFQLSSGSP 167
L+ + L +D KE K + + F F E+ D +T +D Q S+GSP
Sbjct: 121 LVEKNILPVDSAVKEAIKGNQVSFSKSTDAFA-FEEDSSSDGLSPDQTRSEDPQNSAGSP 179
Query: 168 PEMVQMISQATASQRTSAPEISSILSEQPEKDDTPSH 204
P+ + +T S T+ S +++ + PSH
Sbjct: 180 PDAKASDTPSTGSLGTNQDLASGSENDRNDSASQPSH 216
>gi|226423891 myocardin isoform 3 [Homo sapiens]
Length = 684
Score = 30.4 bits (67), Expect = 1.7
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 108 LLNGDNLWIDKLPKERTKLSVGKLNNLVQEFQIFLENLKDDDAVFPETAQQDFQLSSGSP 167
L+ + L +D KE K + + F F E+ D +T +D Q S+GSP
Sbjct: 25 LVEKNILPVDSAVKEAIKGNQVSFSKSTDAFA-FEEDSSSDGLSPDQTRSEDPQNSAGSP 83
Query: 168 PEMVQMISQATASQRTSAPEISSILSEQPEKDDTPSH 204
P+ + +T S T+ S +++ + PSH
Sbjct: 84 PDAKASDTPSTGSLGTNQDLASGSENDRNDSASQPSH 120
>gi|111118961 sorting nexin 21 isoform d [Homo sapiens]
Length = 158
Score = 30.0 bits (66), Expect = 2.2
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 7 NSDIEDDSSKS-NSNLSLSVGYFPCEDTPCEDTTSWEDAP---------SKGPSIHFLPP 56
+S++EDD ++ +S LS ++ + ED ++ E+A + G PP
Sbjct: 42 SSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPP 101
Query: 57 VQGAWGTERIGRRMK 71
G WG++ + R+++
Sbjct: 102 PDGQWGSQLLARQLQ 116
>gi|15553099 sorting nexin 21 isoform a [Homo sapiens]
Length = 373
Score = 30.0 bits (66), Expect = 2.2
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 7 NSDIEDDSSKS-NSNLSLSVGYFPCEDTPCEDTTSWEDAP---------SKGPSIHFLPP 56
+S++EDD ++ +S LS ++ + ED ++ E+A + G PP
Sbjct: 42 SSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPP 101
Query: 57 VQGAWGTERIGRRMK 71
G WG++ + R+++
Sbjct: 102 PDGQWGSQLLARQLQ 116
>gi|111118959 sorting nexin 21 isoform c [Homo sapiens]
Length = 152
Score = 30.0 bits (66), Expect = 2.2
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 7 NSDIEDDSSKS-NSNLSLSVGYFPCEDTPCEDTTSWEDAP---------SKGPSIHFLPP 56
+S++EDD ++ +S LS ++ + ED ++ E+A + G PP
Sbjct: 42 SSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPP 101
Query: 57 VQGAWGTERIGRRMK 71
G WG++ + R+++
Sbjct: 102 PDGQWGSQLLARQLQ 116
>gi|23510350 sorting nexin 21 isoform b [Homo sapiens]
Length = 199
Score = 30.0 bits (66), Expect = 2.2
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 7 NSDIEDDSSKS-NSNLSLSVGYFPCEDTPCEDTTSWEDAP---------SKGPSIHFLPP 56
+S++EDD ++ +S LS ++ + ED ++ E+A + G PP
Sbjct: 42 SSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPP 101
Query: 57 VQGAWGTERIGRRMK 71
G WG++ + R+++
Sbjct: 102 PDGQWGSQLLARQLQ 116
>gi|195963418 tubulin tyrosine ligase-like family, member 6 isoform
1 [Homo sapiens]
Length = 891
Score = 29.6 bits (65), Expect = 2.9
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 153 PETAQQDFQLSSGSPPEMVQMISQATASQRTSAPEISSILSEQPEKDDTPSH-TQAQCCL 211
PE+ Q +S SPP + TAS S PE ++S + +K TP H TQ +
Sbjct: 689 PESTTQ-LSISPKSPPTLA-----VTASSEYSGPETDRVVSFKCKKQQTPPHLTQKKMLK 742
Query: 212 NF 213
+F
Sbjct: 743 SF 744
>gi|195963416 tubulin tyrosine ligase-like family, member 6 isoform
2 [Homo sapiens]
Length = 584
Score = 29.6 bits (65), Expect = 2.9
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 153 PETAQQDFQLSSGSPPEMVQMISQATASQRTSAPEISSILSEQPEKDDTPSH-TQAQCCL 211
PE+ Q +S SPP + TAS S PE ++S + +K TP H TQ +
Sbjct: 382 PESTTQ-LSISPKSPPTLA-----VTASSEYSGPETDRVVSFKCKKQQTPPHLTQKKMLK 435
Query: 212 NF 213
+F
Sbjct: 436 SF 437
>gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [Homo
sapiens]
Length = 299
Score = 29.3 bits (64), Expect = 3.8
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 219 WLRQ---RILP-----SLLRRDHPVNATKSPHRSAPTKRLFHRGKRIQPQETLELGHPI 269
WL Q R+LP S + RD P AT + AP R G ++Q +ET L PI
Sbjct: 161 WLEQNLERVLPQPPKSSEVWRDEPAVATGAASDPAPPGRPQEMGPKLQARETPSLPTPI 219
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 29.3 bits (64), Expect = 3.8
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 219 WLRQ---RILP-----SLLRRDHPVNATKSPHRSAPTKRLFHRGKRIQPQETLELGHPI 269
WL Q R+LP S + RD P AT + AP R G ++Q +ET L PI
Sbjct: 161 WLEQNLERVLPQPPKSSEVWRDEPAVATGAASDPAPPGRPQEMGPKLQARETPSLPTPI 219
>gi|158534077 regulator of G-protein signaling 22 [Homo sapiens]
Length = 1264
Score = 29.3 bits (64), Expect = 3.8
Identities = 21/109 (19%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 134 LVQEFQIFLENLKDDDAVFPETAQQDFQLSSGSPPEMVQMISQATASQRTSAP------- 186
LV F FL +A+ F++++ +P + + + + +Q+ P
Sbjct: 28 LVDYFNEFLSLPTFSEAIRFNADYGVFEVANDAPQFLEKQLKKILQNQQPRNPIYDVVRK 87
Query: 187 ---EISSILSEQPEKDDTPSHTQAQCCLNFGWAFSWLRQRILPSLLRRD 232
E+ + P++D+T + CL+ W+++ LP+ L D
Sbjct: 88 GKNEVKPVQMNAPDEDETINVNYNIMCLSREEGIKWIKKERLPAFLESD 136
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 28.9 bits (63), Expect = 4.9
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 4 SSSNSDIEDDSSKSNSNLSLSVGYFPCEDTPCEDTTSWEDAPSKGPSIHFLPPVQGAWGT 63
S+ ++ ++++S + + +L G C+ T C+DT G F + G
Sbjct: 44 SAVDASVQEESPVTKEDSALCGGGDICKSTSCDDTPD-------GAGGAFAAQPEDCDGE 96
Query: 64 ERIGRRMKRQDQIQDEPEQFC 84
+R +Q Q+ D P + C
Sbjct: 97 KREDLEQLQQKQVNDHPPEQC 117
>gi|66932918 MER receptor tyrosine kinase precursor [Homo sapiens]
Length = 999
Score = 28.9 bits (63), Expect = 4.9
Identities = 17/71 (23%), Positives = 34/71 (47%)
Query: 122 ERTKLSVGKLNNLVQEFQIFLENLKDDDAVFPETAQQDFQLSSGSPPEMVQMISQATASQ 181
+R L +GK+ + + NLK +D + A + +L + S E+ + +S+A +
Sbjct: 583 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMK 642
Query: 182 RTSAPEISSIL 192
S P + +L
Sbjct: 643 DFSHPNVIRLL 653
>gi|38016947 complement component 5 preproprotein [Homo sapiens]
Length = 1676
Score = 28.1 bits (61), Expect = 8.4
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 132 NNLVQEFQIFL-----ENLKDDDAVFPETAQQDFQLSSGSPPEMVQMISQATASQRTSAP 186
N +V E +++ E+LKDD +TA Q+ L +G I+Q T T+
Sbjct: 257 NKVVTEADVYITFGIREDLKDDQKEMMQTAMQNTMLING--------IAQVTFDSETAVK 308
Query: 187 EIS 189
E+S
Sbjct: 309 ELS 311
>gi|115495445 ankyrin repeat domain 30A [Homo sapiens]
Length = 1341
Score = 28.1 bits (61), Expect = 8.4
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 143 ENLKDDDAVFPETAQQDFQLSSGSPPEMVQMISQ-----ATASQRTSAPEISSILSEQPE 197
+ L+ D PE+ Q+D++ +S + + +SQ A+ + +I+ L E P
Sbjct: 488 QTLRADPMFPPESKQKDYEENSWDSESLCETVSQKDVCLPKATHQKEIDKINGKLEESPN 547
Query: 198 KD 199
KD
Sbjct: 548 KD 549
>gi|138175817 zinc finger protein 236 [Homo sapiens]
Length = 1845
Score = 28.1 bits (61), Expect = 8.4
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 146 KDDDAVFPETAQQDFQLSSGSPPEMVQMISQATASQRTSAPEISSILSEQPEKDDTPSHT 205
K V T ++ QL+ P E + + IS + +Q E D P H
Sbjct: 1107 KSRPEVITFTEEETAQLAKIRPQESATVSEKVLVQSAAEKDRISELRDKQAELQDEPKH- 1165
Query: 206 QAQCC 210
A CC
Sbjct: 1166 -ANCC 1169
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,198,433
Number of Sequences: 37866
Number of extensions: 505086
Number of successful extensions: 1298
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1283
Number of HSP's gapped (non-prelim): 31
length of query: 269
length of database: 18,247,518
effective HSP length: 101
effective length of query: 168
effective length of database: 14,423,052
effective search space: 2423072736
effective search space used: 2423072736
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.