Guide to the Human Genome
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Name: CYP20A1 Sequence: fasta or formatted (462aa) NCBI GI: 29171730
Description:

cytochrome P450, family 20, subfamily A, polypeptide 1

Referenced in:

Cytochrome P450 Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         18           2
 C cysteine            1.3          6           1
 D aspartate           4.8         22           2
 E glutamate           7.4         34           2
 F phenylalanine       5.0         23           1
 G glycine             5.8         27           3
 H histidine           2.4         11           1
 I isoleucine          5.2         24           2
 K lysine              6.1         28           2
 L leucine            12.3         57           3
 M methionine          2.6         12           1
 N asparagine          3.7         17           1
 P proline             3.9         18           1
 Q glutamine           5.0         23           2
 R arginine            4.3         20           2
 S serine              7.8         36           2
 T threonine           6.3         29           2
 V valine              8.2         38           2
 W tryptophan          1.3          6           1
 Y tyrosine            2.8         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytochrome P450, family 20, subfamily A, polypeptide... 
CYP3A4                0.065   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP3A7                0.056   cytochrome P450, family 3, subfamily A, polypeptide 7...
CYP4V2                0.056   cytochrome P450, family 4, subfamily v, polypeptide...
CYP3A5                0.050   cytochrome P450, family 3, subfamily A, polypeptide 5...
CYP46A1               0.050   cytochrome P450, family 46 
CYP3A43               0.049   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP27A1               0.048   cytochrome P450, family 27, subfamily A, polypeptide ...
CYP17A1               0.045   cytochrome P450, family 17 
CYP3A43               0.045   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP2W1                0.045   cytochrome P450, family 2, subfamily W, polypeptide ...
CYP4A11               0.042   cytochrome P450, family 4, subfamily A, polypeptide...
CYP2R1                0.041   cytochrome P450, family 2, subfamily R, polypeptide ...
CYP3A43               0.040   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP24A1               0.039   cytochrome P450 family 24 subfamily A polypeptide 1 ...
TBXAS1                0.039   thromboxane A synthase 1, platelet isoform TXS-I [H...
TBXAS1                0.039   thromboxane A synthase 1, platelet isoform TXS-I [H...
CYP4A22               0.038   cytochrome P450, family 4, subfamily A, polypeptide ...
CYP2J2                0.038   cytochrome P450, family 2, subfamily J, polypeptide ...
CYP2U1                0.037   cytochrome P450, family 2, subfamily U, polypeptide ...
CYP51A1               0.036   cytochrome P450, family 51, subfamily A, polypeptide ...
CYP2A13               0.036   cytochrome P450, family 2, subfamily A, polypeptide ...
CYP4F8                0.036   cytochrome P450, family 4, subfamily F, polypeptide 8...
CYP27B1               0.035   cytochrome P450, family 27, subfamily B, polypeptide ...
CYP2C19               0.033   cytochrome P450, family 2, subfamily C, polypeptide 1...
CYP2A6                0.033   cytochrome P450, family 2, subfamily A, polypeptide...
TBXAS1                0.032   thromboxane A synthase 1, platelet isoform TXS-II [...
CYP4F2                0.032   cytochrome P450, family 4, subfamily F, polypeptide ...
CYP19A1               0.032   cytochrome P450, family 19 
CYP19A1               0.032   cytochrome P450, family 19 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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