Guide to the Human Genome
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Name: TBXAS1 Sequence: fasta or formatted (534aa) NCBI GI: 195972896
Description:

thromboxane A synthase 1, platelet isoform TXS-I

Referenced in:

Arachidonate, Prostaglandins, and Leukotrienes
Cytochrome P450 Enzymes
Platelets and Megakaryocytes

Other entries for this name:
alt mRNA [534aa] thromboxane A synthase 1, platelet isoform TXS-I
alt prot [460aa] thromboxane A synthase 1, platelet isoform TXS-II
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         41           2
 C cysteine            2.2         12           1
 D aspartate           4.1         22           1
 E glutamate           6.9         37           2
 F phenylalanine       6.9         37           2
 G glycine             5.1         27           1
 H histidine           2.2         12           2
 I isoleucine          4.1         22           2
 K lysine              4.3         23           1
 L leucine            12.0         64           3
 M methionine          3.2         17           2
 N asparagine          3.2         17           1
 P proline             7.1         38           2
 Q glutamine           3.9         21           2
 R arginine            6.9         37           3
 S serine              6.0         32           2
 T threonine           3.7         20           2
 V valine              6.9         37           2
 W tryptophan          0.9          5           1
 Y tyrosine            2.4         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   thromboxane A synthase 1, platelet isoform TXS-I [H... 
TBXAS1                1.000   thromboxane A synthase 1, platelet isoform TXS-I [H...
TBXAS1                0.853   thromboxane A synthase 1, platelet isoform TXS-II [...
CYP3A4                0.280   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP3A5                0.274   cytochrome P450, family 3, subfamily A, polypeptide 5...
CYP3A7                0.270   cytochrome P450, family 3, subfamily A, polypeptide 7...
CYP3A43               0.264   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP3A43               0.261   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP3A43               0.203   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP4V2                0.112   cytochrome P450, family 4, subfamily v, polypeptide...
CYP4X1                0.101   cytochrome P450, family 4, subfamily X, polypeptide ...
CYP4F8                0.091   cytochrome P450, family 4, subfamily F, polypeptide 8...
CYP46A1               0.089   cytochrome P450, family 46 
CYP17A1               0.089   cytochrome P450, family 17 
CYP2C19               0.086   cytochrome P450, family 2, subfamily C, polypeptide 1...
CYP4F3                0.085   cytochrome P450, family 4, subfamily F, polypeptide...
CYP2U1                0.084   cytochrome P450, family 2, subfamily U, polypeptide ...
CYP4F22               0.084   cytochrome P450, family 4, subfamily F, polypeptide...
CYP4Z1                0.082   cytochrome P450 4Z1 
CYP2J2                0.082   cytochrome P450, family 2, subfamily J, polypeptide ...
CYP4B1                0.082   cytochrome P450, family 4, subfamily B, polypeptide...
CYP4F2                0.081   cytochrome P450, family 4, subfamily F, polypeptide ...
CYP4B1                0.081   cytochrome P450, family 4, subfamily B, polypeptide...
CYP4F12               0.081   cytochrome P450, family 4, subfamily F, polypeptide...
CYP2C9                0.076   cytochrome P450, family 2, subfamily C, polypeptide ...
CYP4F11               0.076   cytochrome P450 family 4 subfamily F polypeptide 11...
CYP4F11               0.076   cytochrome P450 family 4 subfamily F polypeptide 11...
CYP27B1               0.076   cytochrome P450, family 27, subfamily B, polypeptide ...
CYP2C18               0.076   cytochrome P450 family 2 subfamily C polypeptide 18 ...
CYP2C8                0.074   cytochrome P450, family 2, subfamily C, polypeptide ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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