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Search of human proteins with 29126247
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29126247 basic helix-loop-helix family, member a15 [Homo
sapiens]
(189 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi... 382 e-107
gi|68989258 neurogenin 3 [Homo sapiens] 76 2e-14
gi|4885075 atonal homolog 1 [Homo sapiens] 74 6e-14
gi|57529222 basic helix-loop-helix domain containing, class B, 4... 74 6e-14
gi|148922889 scleraxis homolog B [Homo sapiens] 74 1e-13
gi|186972126 scleraxis homolog A [Homo sapiens] 74 1e-13
gi|21553337 atonal homolog 7 [Homo sapiens] 72 3e-13
gi|31077092 neurogenin 2 [Homo sapiens] 71 6e-13
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo... 70 1e-12
gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens] 67 9e-12
gi|38455396 neurogenin 1 [Homo sapiens] 67 1e-11
gi|30039710 pancreas specific transcription factor, 1a [Homo sap... 67 1e-11
gi|98986461 neurogenic differentiation 2 [Homo sapiens] 66 2e-11
gi|239749439 PREDICTED: similar to transcription factor 23 [Homo... 65 3e-11
gi|239743573 PREDICTED: similar to transcription factor 23 [Homo... 65 3e-11
gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens] 65 3e-11
gi|4758506 basic helix-loop-helix transcription factor HAND1 [Ho... 65 3e-11
gi|4507741 twist [Homo sapiens] 65 5e-11
gi|12545384 basic helix-loop-helix transcription factor HAND2 [H... 64 1e-10
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 62 2e-10
gi|27475985 neurogenic differentiation 6 [Homo sapiens] 62 2e-10
gi|121114306 neurogenic differentiation 1 [Homo sapiens] 62 4e-10
gi|226498192 atonal homolog 8 [Homo sapiens] 60 9e-10
gi|28411948 oligodendrocyte transcription factor 3 [Homo sapiens] 60 1e-09
gi|153792190 neurogenic differentiation 4 [Homo sapiens] 60 1e-09
gi|239754900 PREDICTED: similar to transcription factor 23 [Homo... 60 1e-09
gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo... 59 2e-09
gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo sapi... 57 7e-09
gi|116805332 musculin [Homo sapiens] 56 2e-08
gi|17981708 twist homolog 2 [Homo sapiens] 56 2e-08
>gi|29126247 basic helix-loop-helix family, member a15 [Homo
sapiens]
Length = 189
Score = 382 bits (982), Expect = e-107
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MKTKNRPPRRRAPVQDTEATPGEGTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRR 60
MKTKNRPPRRRAPVQDTEATPGEGTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRR
Sbjct: 1 MKTKNRPPRRRAPVQDTEATPGEGTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRR 60
Query: 61 PGPSGPGGRRDSSIQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLA 120
PGPSGPGGRRDSSIQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLA
Sbjct: 61 PGPSGPGGRRDSSIQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLA 120
Query: 121 KNYIKSLTATILTMSSSRLPGLEGPGPKLYQHYQQQQQVAGGALGATEAQPQGHLQRYST 180
KNYIKSLTATILTMSSSRLPGLEGPGPKLYQHYQQQQQVAGGALGATEAQPQGHLQRYST
Sbjct: 121 KNYIKSLTATILTMSSSRLPGLEGPGPKLYQHYQQQQQVAGGALGATEAQPQGHLQRYST 180
Query: 181 QIHSFREGT 189
QIHSFREGT
Sbjct: 181 QIHSFREGT 189
>gi|68989258 neurogenin 3 [Homo sapiens]
Length = 214
Score = 76.3 bits (186), Expect = 2e-14
Identities = 57/133 (42%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Query: 19 ATPGEGTPDGSLPNPGPEPAKGLRSRPARAAAR-APGEGRRRRPGPSGPGGRRDSSIQRR 77
A+ E T S P P P +G + R AP + R RR G S P S QRR
Sbjct: 24 ASEDEVTCPTSAP-PSPTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQRR 82
Query: 78 L---ESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATILTM 134
++N+RER RMH LN+A ALR V+P D KL+KIETL A NYI +LT T L +
Sbjct: 83 SRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQT-LRI 141
Query: 135 SSSRLPGLEGPGP 147
+ L LE P P
Sbjct: 142 ADHSLYALEPPAP 154
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 74.3 bits (181), Expect = 6e-14
Identities = 51/124 (41%), Positives = 63/124 (50%), Gaps = 12/124 (9%)
Query: 54 GEGRRRRPGPSGPGGRRDSSIQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSK 113
G R+R P G + QRRL +N RER+RMH LN+AF LR VIP DKKLSK
Sbjct: 141 GCSRQRAPSSKQVNGVQK---QRRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSK 197
Query: 114 IETLTLAKNYIKSLTATILTMSSSRLPGLEGPGPKL-----YQHYQQQQQVAGGALGATE 168
ETL +A+ YI +L+ + T S P P P + H + GGA AT
Sbjct: 198 YETLQMAQIYINALSELLQTPSGGEQP----PPPPASCKSDHHHLRTAASYEGGAGNATA 253
Query: 169 AQPQ 172
A Q
Sbjct: 254 AGAQ 257
>gi|57529222 basic helix-loop-helix domain containing, class B, 4
[Homo sapiens]
Length = 225
Score = 74.3 bits (181), Expect = 6e-14
Identities = 58/120 (48%), Positives = 67/120 (55%), Gaps = 10/120 (8%)
Query: 15 QDTEATPGEGTPD--GSLPN-PGPE-PAKGLRSRPARAAARAPG-EGRRRRPGP-SGPGG 68
++ EA G GTP G LP P P PA+ S ++ E RRRR GP S G
Sbjct: 32 REPEAARGYGTPGPGGDLPAAPAPRAPAQAAESSGEQSGDEDDAFEQRRRRRGPGSAADG 91
Query: 69 RRDSSIQR--RLESNERERQRMHKLNNAFQALREVIP--HVRADKKLSKIETLTLAKNYI 124
RR QR RL N RER+RMH LN+A LR VIP H + +KLSKI TL LAKNYI
Sbjct: 92 RRRPREQRSLRLSINARERRRMHDLNDALDGLRAVIPYAHSPSVRKLSKIATLLLAKNYI 151
>gi|148922889 scleraxis homolog B [Homo sapiens]
Length = 201
Score = 73.6 bits (179), Expect = 1e-13
Identities = 46/101 (45%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 38 AKGLRSRPARA-AARAPGEGRRRRPGP-----SGPGGRRDSSIQRRLESNERERQRMHKL 91
+ G +P R AAR +G RRR G GPGGR ++R +N RER R + +
Sbjct: 32 SSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANARERDRTNSV 91
Query: 92 NNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATIL 132
N AF ALR +IP AD+KLSKIETL LA +YI L +L
Sbjct: 92 NTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLL 132
>gi|186972126 scleraxis homolog A [Homo sapiens]
Length = 201
Score = 73.6 bits (179), Expect = 1e-13
Identities = 46/101 (45%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 38 AKGLRSRPARA-AARAPGEGRRRRPGP-----SGPGGRRDSSIQRRLESNERERQRMHKL 91
+ G +P R AAR +G RRR G GPGGR ++R +N RER R + +
Sbjct: 32 SSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANARERDRTNSV 91
Query: 92 NNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATIL 132
N AF ALR +IP AD+KLSKIETL LA +YI L +L
Sbjct: 92 NTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLL 132
>gi|21553337 atonal homolog 7 [Homo sapiens]
Length = 152
Score = 72.0 bits (175), Expect = 3e-13
Identities = 40/84 (47%), Positives = 49/84 (58%)
Query: 45 PARAAARAPGEGRRRRPGPSGPGGRRDSSIQRRLESNERERQRMHKLNNAFQALREVIPH 104
PA A P G G GR +S+ +RRL +N RER+RM LN AF LR V+P
Sbjct: 10 PAGARVAPPCAGGTECAGTCAGAGRLESAARRRLAANARERRRMQGLNTAFDRLRRVVPQ 69
Query: 105 VRADKKLSKIETLTLAKNYIKSLT 128
DKKLSK ETL +A +YI +LT
Sbjct: 70 WGQDKKLSKYETLQMALSYIMALT 93
>gi|31077092 neurogenin 2 [Homo sapiens]
Length = 272
Score = 70.9 bits (172), Expect = 6e-13
Identities = 52/131 (39%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 16 DTEATPGEGTPDGSLPNPGPEPAKGLRSRPARAA-----ARAPG--EGRRRRPGPS---G 65
D E G G+ G E +G R A A AR G +RRP +
Sbjct: 38 DEEEEEEPGASGGARRQRGAEAGQGARGGVAAGAEGCRPARLLGLVHDCKRRPSRARAVS 97
Query: 66 PGGRRDSSIQR-----RLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLA 120
G + ++QR RL++N RER RMH LN A ALREV+P D KL+KIETL A
Sbjct: 98 RGAKTAETVQRIKKTRRLKANNRERNRMHNLNAALDALREVLPTFPEDAKLTKIETLRFA 157
Query: 121 KNYIKSLTATI 131
NYI +LT T+
Sbjct: 158 HNYIWALTETL 168
>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
sapiens]
Length = 199
Score = 69.7 bits (169), Expect = 1e-12
Identities = 52/129 (40%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query: 48 AAARAPGEGRRRRPGPSGPGGRRDSSIQRRLESNERERQRMHKLNNAFQALREVIPHVRA 107
AA R PG G RR G G G +++R +N RER R +N AF ALR +IP
Sbjct: 46 AARRGPGPGGGRRAGGGGGAGPV-VVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPV 104
Query: 108 DKKLSKIETLTLAKNYIKSLTATILTMSSSRLPGLEGPGPKLYQHYQQQQQVAGGALGAT 167
D+KLSKIETL LA +YI L A +L + S G Q + AG A GA
Sbjct: 105 DRKLSKIETLRLASSYIAHL-ANVLLLGDSADDG------------QPCFRAAGSAKGAV 151
Query: 168 EAQPQGHLQ 176
A G Q
Sbjct: 152 PAAADGGRQ 160
>gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens]
Length = 193
Score = 67.0 bits (162), Expect = 9e-12
Identities = 44/103 (42%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 28 GSLPN---PGPEPAKGLRSRPARAAARAPGEGRRRRPGPSGPGGRRDSSIQRRLESNERE 84
G+LP P P G +R A+ RRRRP + GG +++ RR NERE
Sbjct: 4 GTLPRSAPPAPPVPVGCAARRRPASPELLRCSRRRRPATAETGGGA-AAVARR---NERE 59
Query: 85 RQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSL 127
R R+ +N FQALR+ +PH A KKLSK+ETL A YI++L
Sbjct: 60 RNRVKLVNLGFQALRQHVPHGGASKKLSKVETLRSAVEYIRAL 102
>gi|38455396 neurogenin 1 [Homo sapiens]
Length = 237
Score = 66.6 bits (161), Expect = 1e-11
Identities = 49/117 (41%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 34 GPEPAKGLRSRP-ARAAARAPG-----EGRRRRPGPSGPGGR---RDSSIQRRLESNERE 84
GP PA R P A+ PG + RRRR G + RR+++N+RE
Sbjct: 43 GP-PAPARRGAPNISRASEVPGAQDDEQERRRRRGRTRVRSEALLHSLRRSRRVKANDRE 101
Query: 85 RQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATILTMSSSRLPG 141
R RMH LN A ALR V+P D KL+KIETL A NYI +L T L ++ LPG
Sbjct: 102 RNRMHNLNAALDALRSVLPSFPDDTKLTKIETLRFAYNYIWALAET-LRLADQGLPG 157
>gi|30039710 pancreas specific transcription factor, 1a [Homo
sapiens]
Length = 328
Score = 66.6 bits (161), Expect = 1e-11
Identities = 46/133 (34%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 24 GTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRRPGPSGPGGRRDSSI-------QR 76
G P G P P L A AA +PG R G + RR + Q
Sbjct: 105 GAPPGGFPYSPGSPPSCLAYPCAGAAVLSPGARLRGLSGAAAAAARRRRRVRSEAELQQL 164
Query: 77 RLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATI---LT 133
R +N RER+RM +N+AF+ LR IP + +K+LSK++TL LA YI L+ + L
Sbjct: 165 RQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLSELVQADLP 224
Query: 134 MSSSRLPGLEGPG 146
+ G GPG
Sbjct: 225 LRGGGAGGCGGPG 237
>gi|98986461 neurogenic differentiation 2 [Homo sapiens]
Length = 382
Score = 65.9 bits (159), Expect = 2e-11
Identities = 48/127 (37%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 7 PPRRRAPV-----QDTEATPGEGTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRRP 61
P R PV + TEAT E +G L E + R G ++R
Sbjct: 51 PARAAKPVPLRGEEGTEATLAEVKEEGELGGEEEEEEEEEEGLDEAEGERPKKRGPKKRK 110
Query: 62 GPSGPGGRRDSSIQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAK 121
R + S RR ++N RER RMH LN A LR+V+P +KLSKIETL LAK
Sbjct: 111 MTKA---RLERSKLRRQKANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAK 167
Query: 122 NYIKSLT 128
NYI +L+
Sbjct: 168 NYIWALS 174
>gi|239749439 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 65.5 bits (158), Expect = 3e-11
Identities = 45/109 (41%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Query: 24 GTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRRPGPSGPGGRRDSSIQRRLESNE- 82
G P GS + EPA P AA R GR PGP+GPGG S R +N
Sbjct: 4 GRPAGSPLSASAEPA------PLAAAIRDSRPGRTG-PGPAGPGGGSRSGSGRPAAANAA 56
Query: 83 RERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATI 131
RER R+ L +AF L+ +P V D KLSK++ L LA YI LT ++
Sbjct: 57 RERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSL 105
>gi|239743573 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 65.5 bits (158), Expect = 3e-11
Identities = 45/109 (41%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Query: 24 GTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRRPGPSGPGGRRDSSIQRRLESNE- 82
G P GS + EPA P AA R GR PGP+GPGG S R +N
Sbjct: 4 GRPAGSPLSASAEPA------PLAAAIRDSRPGRTG-PGPAGPGGGSRSGSGRPAAANAA 56
Query: 83 RERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATI 131
RER R+ L +AF L+ +P V D KLSK++ L LA YI LT ++
Sbjct: 57 RERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSL 105
>gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]
Length = 271
Score = 65.1 bits (157), Expect = 3e-11
Identities = 51/148 (34%), Positives = 69/148 (46%), Gaps = 9/148 (6%)
Query: 11 RAPVQDTEATPGEGTPDGSLPNPGPEPAKGLRSRP-ARAAARAPGEGRRRRPGPSG-PGG 68
R P + ++ + S P K R +P A A PG G PG S P
Sbjct: 39 RQPPSSSSSSTSSTSSTSSSSTTAPLLPKAAREKPEAPAEPPGPGPGSGAHPGGSARPDA 98
Query: 69 RRDSSIQRRLESNERERQRMHKLNNAFQALREVI-PHVRA------DKKLSKIETLTLAK 121
+ + Q R + N RER+RM LN A ALREVI P+ A +KLSKI TL LA+
Sbjct: 99 KEEQQQQLRRKINSRERKRMQDLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLLAR 158
Query: 122 NYIKSLTATILTMSSSRLPGLEGPGPKL 149
NYI L +++ + + G P+L
Sbjct: 159 NYILLLGSSLQELRRALGEGAGPAAPRL 186
>gi|4758506 basic helix-loop-helix transcription factor HAND1 [Homo
sapiens]
Length = 215
Score = 65.1 bits (157), Expect = 3e-11
Identities = 60/182 (32%), Positives = 81/182 (44%), Gaps = 27/182 (14%)
Query: 5 NRPPRRRAPVQDTEATPGEGTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRRPGPS 64
+R + R Q +P + PD P GP PA AAA A G RPG S
Sbjct: 33 SRCHQERPYFQSWLLSPADAAPD--FPAGGPPPA---------AAAAATAYGPDARPGQS 81
Query: 65 -----GPGGRRDSSIQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTL 119
GGR +R+ ++ER+R +N+AF LRE IP+V AD KLSKI+TL L
Sbjct: 82 PGRLEALGGRLG---RRKGSGPKKERRRTESINSAFAELRECIPNVPADTKLSKIKTLRL 138
Query: 120 AKNYIKSLTATILTMSSS--------RLPGLEGPGPKLYQHYQQQQQVAGGALGATEAQP 171
A +YI L + + S L +G + QQ + ALG E +
Sbjct: 139 ATSYIAYLMDVLAKDAQSGDPEAFKAELKKADGGRESKRKRELQQHEGFPPALGPVEKRI 198
Query: 172 QG 173
+G
Sbjct: 199 KG 200
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 64.7 bits (156), Expect = 5e-11
Identities = 45/123 (36%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 9 RRRAPVQDTEATPGEGTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRRPGPSGPGG 68
+RR+ + G G G G EP + + + +A G G G S GG
Sbjct: 38 KRRSSRRSAGGGAGPGGAAGGGVGGGDEPGSPAQGKRGKKSAGCGGGGGAGGGGGSSSGG 97
Query: 69 RRDSSIQ----RRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYI 124
S + +R+ +N RERQR LN AF ALR++IP + +D KLSKI+TL LA YI
Sbjct: 98 GSPQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYI 156
Query: 125 KSL 127
L
Sbjct: 157 DFL 159
>gi|12545384 basic helix-loop-helix transcription factor HAND2 [Homo
sapiens]
Length = 217
Score = 63.5 bits (153), Expect = 1e-10
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 62 GPSGPGGRRDSSIQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAK 121
GP G GG R ++RR +N +ER+R +N+AF LRE IP+V AD KLSKI+TL LA
Sbjct: 88 GPPGLGGPRP--VKRRGTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLAT 145
Query: 122 NYIKSL 127
+YI L
Sbjct: 146 SYIAYL 151
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 62.4 bits (150), Expect = 2e-10
Identities = 53/140 (37%), Positives = 63/140 (45%), Gaps = 33/140 (23%)
Query: 11 RAPVQDTEATPGEGTPDGSLPNPGPEPAKGLRSRPARAAARAP------GEGRRRRPGPS 64
RA V D A+PG G G + A+G + A P G G G S
Sbjct: 161 RAGVADPRASPGAG-------GGGAKAAEGCSNAHLHGGASVPPGGLGGGGGGGSSSGSS 213
Query: 65 GPGG----------------RRDSSIQR--RLESNERERQRMHKLNNAFQALREVIP--H 104
G GG + S Q+ RL N RER+RMH LN+A LR VIP H
Sbjct: 214 GGGGGSGSGSGGSSSSSSSSSKKSKEQKALRLNINARERRRMHDLNDALDELRAVIPYAH 273
Query: 105 VRADKKLSKIETLTLAKNYI 124
+ +KLSKI TL LAKNYI
Sbjct: 274 SPSVRKLSKIATLLLAKNYI 293
>gi|27475985 neurogenic differentiation 6 [Homo sapiens]
Length = 337
Score = 62.4 bits (150), Expect = 2e-10
Identities = 38/82 (46%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 76 RRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLT------- 128
RR E+N RER RMH LN+A LR+V+P +KLSKIETL LAKNYI +L+
Sbjct: 95 RRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGK 154
Query: 129 -ATILTMSSSRLPGLEGPGPKL 149
+LT + GL P L
Sbjct: 155 RPDLLTFVQNLCKGLSQPTTNL 176
>gi|121114306 neurogenic differentiation 1 [Homo sapiens]
Length = 356
Score = 61.6 bits (148), Expect = 4e-10
Identities = 46/127 (36%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 16 DTEATPGEGTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRRPGPSGPG---GRRDS 72
D EA E + SL N G E + + + +R GP R +
Sbjct: 42 DLEAMNAE---EDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLER 98
Query: 73 SIQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATIL 132
RR+++N RER RMH LN A LR+V+P +KLSKIETL LAKNYI +L+ +
Sbjct: 99 FKLRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 158
Query: 133 TMSSSRL 139
+ S L
Sbjct: 159 SGKSPDL 165
>gi|226498192 atonal homolog 8 [Homo sapiens]
Length = 321
Score = 60.5 bits (145), Expect = 9e-10
Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 7 PPRRRAPVQDTEATPGEGTPDGSLPNPGPEPAKGLRSRPARAAA-----RAPGEGRRRRP 61
PP R AP A P P S P P G S + + + R+RP
Sbjct: 159 PPARPAP----SAPPAPPAPPESTVRPAPPTRPGESSYSSISHVIYNNHQDSSASPRKRP 214
Query: 62 GPSGPGGRRDSSIQ--RRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTL 119
G + ++Q RRL +N RER R+H ++ AF+ALR+ +P +KLSK+ L +
Sbjct: 215 GEATAASSEIKALQQTRRLLANARERTRVHTISAAFEALRKQVPCYSYGQKLSKLAILRI 274
Query: 120 AKNYIKSL 127
A NYI SL
Sbjct: 275 ACNYILSL 282
>gi|28411948 oligodendrocyte transcription factor 3 [Homo sapiens]
Length = 272
Score = 60.1 bits (144), Expect = 1e-09
Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 7/92 (7%)
Query: 46 ARAAARAPGEGRRRRPGPSGPGGRRDSSIQR-RLESNERERQRMHKLNNAFQALREVIP- 103
+RA A+A GE + + + +Q+ RL+ N RER+RMH LN A LREV+P
Sbjct: 57 SRAGAKAAGESSKYKIKKQ----LSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPY 112
Query: 104 -HVRADKKLSKIETLTLAKNYIKSLTATILTM 134
H + +KLSKI TL LA+NYI LT+++ M
Sbjct: 113 AHGPSVRKLSKIATLLLARNYILMLTSSLEEM 144
>gi|153792190 neurogenic differentiation 4 [Homo sapiens]
Length = 331
Score = 60.1 bits (144), Expect = 1e-09
Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 76 RRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATILT 133
RR+++N RER RMH LN+A LR V+P +KLSKIETL LA+NYI +L+ + T
Sbjct: 88 RRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLET 145
>gi|239754900 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 59.7 bits (143), Expect = 1e-09
Identities = 43/109 (39%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 24 GTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRRPGPSGPGGRRDSSIQRRLESNE- 82
G P GS + EPA P AA R GR PGP+G GG S R N
Sbjct: 4 GRPAGSPLSASAEPA------PLAAAIRDXRPGRTG-PGPAGLGGGSCSGSGRPAAENAA 56
Query: 83 RERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATI 131
RER R+ L +AF ++ +P V D KLSK++ L LA YI LT ++
Sbjct: 57 RERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSL 105
>gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo
sapiens]
Length = 323
Score = 58.9 bits (141), Expect = 2e-09
Identities = 34/62 (54%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 75 QRRLESNERERQRMHKLNNAFQALREVIP--HVRADKKLSKIETLTLAKNYIKSLTATIL 132
Q RL+ N RER+RMH LN A LREV+P H + +KLSKI TL LA+NYI LT ++
Sbjct: 108 QLRLKINSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSLE 167
Query: 133 TM 134
M
Sbjct: 168 EM 169
>gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo
sapiens]
Length = 280
Score = 57.4 bits (137), Expect = 7e-09
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 45 PARAAARAPGEGRRRRPGPSG---PGGRRDSSIQRRLESNERERQRMHKLNNAFQALREV 101
PA + P +RRP G + + RR+ +N RER R +N AF LR++
Sbjct: 117 PAGPFSIFPSSRLKRRPSHCELDLAEGHQPQKVARRVFTNSRERWRQQNVNGAFAELRKL 176
Query: 102 IPHVRADKKLSKIETLTLAKNYIKSLTATILTMSSSRLPGLEGPGPK 148
+P D+KLSK E L LA YI L + +++ G PGP+
Sbjct: 177 LPTHPPDRKLSKNEVLRLAMKYIGFLVRLLRDQAAALAAGPTPPGPR 223
>gi|116805332 musculin [Homo sapiens]
Length = 206
Score = 56.2 bits (134), Expect = 2e-08
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 21/139 (15%)
Query: 7 PPRRRAPVQDTEATPGEGTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRRP----- 61
P +R P++ E + + + S P+ G R A A + +R+RP
Sbjct: 24 PASKRPPLRGVERSYASPSDNSSAEEEDPD---GEEERCALGTAGSAEGCKRKRPRVAGG 80
Query: 62 ----GPSGPGGRR---------DSSIQRRLESNERERQRMHKLNNAFQALREVIPHVRAD 108
G +G GG++ + +R +N RER RM L+ AF L+ +P V D
Sbjct: 81 GGAGGSAGGGGKKPLPAKGSAAECKQSQRNAANARERARMRVLSKAFSRLKTSLPWVPPD 140
Query: 109 KKLSKIETLTLAKNYIKSL 127
KLSK++TL LA +YI L
Sbjct: 141 TKLSKLDTLRLASSYIAHL 159
>gi|17981708 twist homolog 2 [Homo sapiens]
Length = 160
Score = 55.8 bits (133), Expect = 2e-08
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 52 APGEGRRRRPGPSGPGGRRDSSIQ-RRLESNERERQRMHKLNNAFQALREVIPHVRADKK 110
+P G+R + G P + +Q +R+ +N RERQR LN AF ALR++IP + +D K
Sbjct: 44 SPTPGKRGKKG--SPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSD-K 100
Query: 111 LSKIETLTLAKNYIKSL 127
LSKI+TL LA YI L
Sbjct: 101 LSKIQTLKLAARYIDFL 117
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,560,065
Number of Sequences: 37866
Number of extensions: 589730
Number of successful extensions: 6154
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 490
Number of HSP's that attempted gapping in prelim test: 4435
Number of HSP's gapped (non-prelim): 1988
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.