Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: BBS7 Sequence: fasta or formatted (715aa) NCBI GI: 29029557
Description:

Bardet-Biedl syndrome 7 protein isoform a

Referenced in:

Planar Cell Polarity

Other entries for this name:
alt prot [672aa] Bardet-Biedl syndrome 7 protein isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         34           3
 C cysteine            1.8         13           1
 D aspartate           6.6         47           2
 E glutamate           6.6         47           2
 F phenylalanine       4.1         29           2
 G glycine             6.0         43           2
 H histidine           2.7         19           1
 I isoleucine          7.0         50           1
 K lysine              7.3         52           2
 L leucine            10.5         75           3
 M methionine          1.7         12           1
 N asparagine          4.2         30           1
 P proline             3.8         27           2
 Q glutamine           5.2         37           2
 R arginine            3.6         26           1
 S serine              7.6         54           2
 T threonine           5.7         41           2
 V valine              7.1         51           2
 W tryptophan          0.4          3           1
 Y tyrosine            3.5         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Bardet-Biedl syndrome 7 protein isoform a 
BBS7                  0.941   Bardet-Biedl syndrome 7 protein isoform b 
BBS2                  0.016   Bardet-Biedl syndrome 2 protein 
MYLK                  0.009   myosin light chain kinase isoform 3A 
MYLK                  0.009   myosin light chain kinase isoform 1 
MYLK                  0.009   myosin light chain kinase isoform 3B 
MYLK                  0.009   myosin light chain kinase isoform 2 
MYO5B                 0.009   myosin VB 
C4orf8                0.006   hypothetical protein LOC8603 
AKAP9                 0.006   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.006   A-kinase anchor protein 9 isoform 3 
SYCP1                 0.006   synaptonemal complex protein 1 
UTP15                 0.006   UTP15, U3 small nucleolar ribonucleoprotein, homolog...
KIF15                 0.006   kinesin family member 15 
CCDC158               0.005   coiled-coil domain containing 158 
CIRH1A                0.005   cirhin 
CCDC67                0.005   coiled-coil domain containing 67 
CCDC7                 0.005   coiled-coil domain containing 7 
CCDC7                 0.005   coiled-coil domain containing 7 
WDR81                 0.004   PREDICTED: WD repeat domain 81 
WDR81                 0.004   PREDICTED: WD repeat domain 81 
WDR81                 0.004   PREDICTED: WD repeat domain 81 
MAP3K7                0.004   mitogen-activated protein kinase kinase kinase 7 iso...
MAP3K7                0.004   mitogen-activated protein kinase kinase kinase 7 isof...
AP4E1                 0.004   adaptor-related protein complex 4, epsilon 1 subunit...
ITGA9                 0.004   integrin, alpha 9 precursor 
ZC4H2                 0.004   zinc finger, C4H2 domain containing 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press