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Search of human proteins with 29029550
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29029550 cat eye syndrome critical region protein 1 isoform
a precursor [Homo sapiens]
(511 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29029550 cat eye syndrome critical region protein 1 isoform a... 1038 0.0
gi|29029552 cat eye syndrome critical region protein 1 isoform b... 531 e-151
gi|47078295 adenosine deaminase [Homo sapiens] 46 7e-05
gi|4502079 adenosine monophosphate deaminase 3 isoform 1A [Homo ... 46 9e-05
gi|70906428 adenosine monophosphate deaminase 3 isoform 1C [Homo... 46 9e-05
gi|70906426 adenosine monophosphate deaminase 3 isoform 1B [Homo... 46 9e-05
gi|4557311 adenosine monophosphate deaminase 1 (isoform M) [Homo... 38 0.025
gi|61175224 adenosine deaminase-like isoform 2 [Homo sapiens] 37 0.033
gi|226693318 adenosine deaminase-like isoform 1 [Homo sapiens] 36 0.073
gi|55925574 adenosine monophosphate deaminase 2 (isoform L) isof... 36 0.073
gi|34147621 adenosine monophosphate deaminase 2 (isoform L) isof... 36 0.073
gi|21264318 adenosine monophosphate deaminase 2 (isoform L) isof... 36 0.073
gi|21361112 solute carrier family 30 (zinc transporter), member ... 31 3.1
gi|116875765 tight junction protein 1 isoform b [Homo sapiens] 30 6.8
gi|116875767 tight junction protein 1 isoform a [Homo sapiens] 30 6.8
gi|72534720 IQ motif containing H isoform 1 [Homo sapiens] 30 6.8
gi|12232475 IQ motif containing H isoform 2 [Homo sapiens] 30 6.8
>gi|29029550 cat eye syndrome critical region protein 1 isoform a
precursor [Homo sapiens]
Length = 511
Score = 1038 bits (2684), Expect = 0.0
Identities = 511/511 (100%), Positives = 511/511 (100%)
Query: 1 MLVDGPSERPALCFLLLAVAMSFFGSALSIDETRAHLLLKEKMMRLGGRLVLNTKEELAN 60
MLVDGPSERPALCFLLLAVAMSFFGSALSIDETRAHLLLKEKMMRLGGRLVLNTKEELAN
Sbjct: 1 MLVDGPSERPALCFLLLAVAMSFFGSALSIDETRAHLLLKEKMMRLGGRLVLNTKEELAN 60
Query: 61 ERLMTLKIAEMKEAMRTLIFPPSMHFFQAKHLIERSQVFNILRMMPKGAALHLHDIGIVT 120
ERLMTLKIAEMKEAMRTLIFPPSMHFFQAKHLIERSQVFNILRMMPKGAALHLHDIGIVT
Sbjct: 61 ERLMTLKIAEMKEAMRTLIFPPSMHFFQAKHLIERSQVFNILRMMPKGAALHLHDIGIVT 120
Query: 121 MDWLVRNVTYRPHCHICFTPRGIMQFRFAHPTPRPSEKCSKWILLEDYRKRVQNVTEFDD 180
MDWLVRNVTYRPHCHICFTPRGIMQFRFAHPTPRPSEKCSKWILLEDYRKRVQNVTEFDD
Sbjct: 121 MDWLVRNVTYRPHCHICFTPRGIMQFRFAHPTPRPSEKCSKWILLEDYRKRVQNVTEFDD 180
Query: 181 SLLRNFTLVTQHPEVIYTNQNVVWSKFETIFFTISGLIHYAPVFRDYVFRSMQEFYEDNV 240
SLLRNFTLVTQHPEVIYTNQNVVWSKFETIFFTISGLIHYAPVFRDYVFRSMQEFYEDNV
Sbjct: 181 SLLRNFTLVTQHPEVIYTNQNVVWSKFETIFFTISGLIHYAPVFRDYVFRSMQEFYEDNV 240
Query: 241 LYMEIRARLLPVYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDHRSKDVAV 300
LYMEIRARLLPVYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDHRSKDVAV
Sbjct: 241 LYMEIRARLLPVYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDHRSKDVAV 300
Query: 301 IAESIRMAMGLRIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGET 360
IAESIRMAMGLRIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGET
Sbjct: 301 IAESIRMAMGLRIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGET 360
Query: 361 DWQGTSIDRNILDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSD 420
DWQGTSIDRNILDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSD
Sbjct: 361 DWQGTSIDRNILDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSD 420
Query: 421 LRNHPVATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSI 480
LRNHPVATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSI
Sbjct: 421 LRNHPVATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSI 480
Query: 481 KYSTLLESEKNTFMEIWKKRWDKFIADVATK 511
KYSTLLESEKNTFMEIWKKRWDKFIADVATK
Sbjct: 481 KYSTLLESEKNTFMEIWKKRWDKFIADVATK 511
>gi|29029552 cat eye syndrome critical region protein 1 isoform b
[Homo sapiens]
Length = 270
Score = 531 bits (1368), Expect = e-151
Identities = 260/260 (100%), Positives = 260/260 (100%)
Query: 252 VYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDHRSKDVAVIAESIRMAMGL 311
VYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDHRSKDVAVIAESIRMAMGL
Sbjct: 11 VYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDHRSKDVAVIAESIRMAMGL 70
Query: 312 RIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGETDWQGTSIDRNI 371
RIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGETDWQGTSIDRNI
Sbjct: 71 RIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGETDWQGTSIDRNI 130
Query: 372 LDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMA 431
LDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMA
Sbjct: 131 LDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMA 190
Query: 432 TGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEKN 491
TGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEKN
Sbjct: 191 TGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEKN 250
Query: 492 TFMEIWKKRWDKFIADVATK 511
TFMEIWKKRWDKFIADVATK
Sbjct: 251 TFMEIWKKRWDKFIADVATK 270
>gi|47078295 adenosine deaminase [Homo sapiens]
Length = 363
Score = 46.2 bits (108), Expect = 7e-05
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 13/187 (6%)
Query: 317 TVVAGFDLVGHEDTGHS--LHDYKEALMIPAKDGVKLPYFFHAGETDWQGTSIDRNILDA 374
TVVA DL G E S L + +A K G+ HAGE + + +D
Sbjct: 176 TVVA-IDLAGDETIPGSSLLPGHVQAYQEAVKSGIHRTV--HAGEVG--SAEVVKEAVD- 229
Query: 375 LMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMATGH 434
+L T R+GHG+ + A+ ++++ E+CP S+ + H V L
Sbjct: 230 -ILKTERLGHGYHTLEDQALYNRLRQENMHFEICPWSSYLTGAWKPDTEHAVIRLKNDQA 288
Query: 435 PMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEKNTFM 494
+++DDP +F + L D+ +G + + K+L +N+ K S L E EK +
Sbjct: 289 NYSLNTDDPLIFKST-LDTDYQMTKRDMGFTEEE---FKRLNINAAKSSFLPEDEKRELL 344
Query: 495 EIWKKRW 501
++ K +
Sbjct: 345 DLLYKAY 351
>gi|4502079 adenosine monophosphate deaminase 3 isoform 1A [Homo
sapiens]
Length = 776
Score = 45.8 bits (107), Expect = 9e-05
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 372 LDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMA 431
L + L I HG L K P ++ + IPI + P+SN L L + +P+ +
Sbjct: 605 LVSAFLTADNISHGLLLKKSPVLQYLYYLAQIPIAMSPLSNNSLFL--EYSKNPLREFLH 662
Query: 432 TGHPMVISSDDPAMFG-AKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEK 490
G + +S+DDP F K + Y + + K L ++A NS+ S L EK
Sbjct: 663 KGLHVSLSTDDPMQFHYTKEALMEEYAIAAQV--WKLSTCDLCEIARNSVLQSGLSHQEK 720
Query: 491 NTFM 494
F+
Sbjct: 721 QKFL 724
>gi|70906428 adenosine monophosphate deaminase 3 isoform 1C [Homo
sapiens]
Length = 774
Score = 45.8 bits (107), Expect = 9e-05
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 372 LDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMA 431
L + L I HG L K P ++ + IPI + P+SN L L + +P+ +
Sbjct: 603 LVSAFLTADNISHGLLLKKSPVLQYLYYLAQIPIAMSPLSNNSLFL--EYSKNPLREFLH 660
Query: 432 TGHPMVISSDDPAMFG-AKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEK 490
G + +S+DDP F K + Y + + K L ++A NS+ S L EK
Sbjct: 661 KGLHVSLSTDDPMQFHYTKEALMEEYAIAAQV--WKLSTCDLCEIARNSVLQSGLSHQEK 718
Query: 491 NTFM 494
F+
Sbjct: 719 QKFL 722
>gi|70906426 adenosine monophosphate deaminase 3 isoform 1B [Homo
sapiens]
Length = 767
Score = 45.8 bits (107), Expect = 9e-05
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 372 LDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMA 431
L + L I HG L K P ++ + IPI + P+SN L L + +P+ +
Sbjct: 596 LVSAFLTADNISHGLLLKKSPVLQYLYYLAQIPIAMSPLSNNSLFL--EYSKNPLREFLH 653
Query: 432 TGHPMVISSDDPAMFG-AKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEK 490
G + +S+DDP F K + Y + + K L ++A NS+ S L EK
Sbjct: 654 KGLHVSLSTDDPMQFHYTKEALMEEYAIAAQV--WKLSTCDLCEIARNSVLQSGLSHQEK 711
Query: 491 NTFM 494
F+
Sbjct: 712 QKFL 715
>gi|4557311 adenosine monophosphate deaminase 1 (isoform M) [Homo
sapiens]
Length = 747
Score = 37.7 bits (86), Expect = 0.025
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 382 IGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATLMATGHPMVISSD 441
I HG L K P ++ + IPI + P+SN L L + +P + G + +S+D
Sbjct: 592 ISHGLNLKKSPVLQYLFFLAQIPIAMSPLSNNSLFL--EYAKNPFLDFLQKGLMISLSTD 649
Query: 442 DPAMFG-AKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSTLLESEKNTFM 494
DP F K + Y + + K + ++A NS+ + EK F+
Sbjct: 650 DPMQFHFTKEPLMEEYAIAAQV--FKLSTCDMCEVARNSVLQCGISHEEKVKFL 701
>gi|61175224 adenosine deaminase-like isoform 2 [Homo sapiens]
Length = 267
Score = 37.4 bits (85), Expect = 0.033
Identities = 54/217 (24%), Positives = 87/217 (40%), Gaps = 33/217 (15%)
Query: 188 LVTQHPEVIYTNQNVVWSK------------FETIFFTISGLIHYAPVFRDYVFRSMQEF 235
L+ Q P++ +Q V K F+TI S V +D + +EF
Sbjct: 39 LIAQKPDLKIHDQMTVIDKGKKRTLEECFQMFQTIHQLTSSPEDILMVTKDVI----KEF 94
Query: 236 YEDNVLYMEIRARLLPVYELSGEHHDEEWSVKTYQE-VAQKFVETHPEFIGIKIIY--SD 292
+D V Y+E+R+ + + KTY E + + ++ E + I + Y +
Sbjct: 95 ADDGVKYLELRS-------TPRRENATGMTKKTYVESILEGIKQSKQENLDIDVRYLIAV 147
Query: 293 HRSKDVAVIAESIRMAMGLRIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLP 352
R V E++++A + V G DL G G + D+ E L+ K G+KL
Sbjct: 148 DRRGGPLVAKETVKLAEEFFLSTEGTVLGLDLSGDPTVGQA-KDFLEPLLEAKKAGLKLA 206
Query: 353 YFFHAGETDWQGTSIDRNILDALMLNTTRIGHGFALS 389
+ T I +LD L RIGHG L+
Sbjct: 207 LHLSEIPNQKKETQI---LLDLL---PDRIGHGTFLN 237
>gi|226693318 adenosine deaminase-like isoform 1 [Homo sapiens]
Length = 328
Score = 36.2 bits (82), Expect = 0.073
Identities = 73/334 (21%), Positives = 123/334 (36%), Gaps = 78/334 (23%)
Query: 188 LVTQHPEVIYTNQNVVWSK------------FETIFFTISGLIHYAPVFRDYVFRSMQEF 235
L+ Q P++ +Q V K F+TI S V +D + +EF
Sbjct: 39 LIAQKPDLKIHDQMTVIDKGKKRTLEECFQMFQTIHQLTSSPEDILMVTKDVI----KEF 94
Query: 236 YEDNVLYMEIRARLLPVYELSGEHHDEEWSVKTYQE-VAQKFVETHPEFIGIKIIY--SD 292
+D V Y+E+R+ + + KTY E + + ++ E + I + Y +
Sbjct: 95 ADDGVKYLELRST-------PRRENATGMTKKTYVESILEGIKQSKQENLDIDVRYLIAV 147
Query: 293 HRSKDVAVIAESIRMAMGLRIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLP 352
R V E++++A + V G DL G ++ + K+ I
Sbjct: 148 DRRGGPLVAKETVKLAEEFFLSTEGTVLGLDLSGDP----TIPNQKKETQI--------- 194
Query: 353 YFFHAGETDWQGTSIDRNILDALMLNTTRIGHGFALSKHPA----VRTYSWKKDIPIEVC 408
+LD L RIGHG L+ + + + IP+E+C
Sbjct: 195 ------------------LLDLL---PDRIGHGTFLNSGEGGSLDLVDFVRQHRIPLELC 233
Query: 409 PISNQVLKLVSDLRNHPVATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKAD 468
SN + V H + HP VI +DD +F A LS ++ + A+
Sbjct: 234 LTSNVKSQTVPSYDQHHFGFWYSIAHPSVICTDDKGVF-ATHLSQEYQ--------LAAE 284
Query: 469 LRTLKQ-----LAMNSIKYSTLLESEKNTFMEIW 497
L Q L+ SI Y +S ++ + W
Sbjct: 285 TFNLTQSQVWDLSYESINYIFASDSTRSELRKKW 318
>gi|55925574 adenosine monophosphate deaminase 2 (isoform L) isoform
3 [Homo sapiens]
Length = 760
Score = 36.2 bits (82), Expect = 0.073
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 370 NILDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATL 429
+++ A ML I HG L K P ++ + I I + P+SN L L +P+
Sbjct: 577 HLVSAFML-AENISHGLLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFL--SYHRNPLPEY 633
Query: 430 MATGHPMVISSDDPAMF 446
++ G + +S+DDP F
Sbjct: 634 LSRGLMVSLSTDDPLQF 650
>gi|34147621 adenosine monophosphate deaminase 2 (isoform L) isoform
2 [Homo sapiens]
Length = 798
Score = 36.2 bits (82), Expect = 0.073
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 370 NILDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATL 429
+++ A ML I HG L K P ++ + I I + P+SN L L +P+
Sbjct: 615 HLVSAFML-AENISHGLLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFL--SYHRNPLPEY 671
Query: 430 MATGHPMVISSDDPAMF 446
++ G + +S+DDP F
Sbjct: 672 LSRGLMVSLSTDDPLQF 688
>gi|21264318 adenosine monophosphate deaminase 2 (isoform L) isoform
1 [Homo sapiens]
Length = 879
Score = 36.2 bits (82), Expect = 0.073
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 370 NILDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVSDLRNHPVATL 429
+++ A ML I HG L K P ++ + I I + P+SN L L +P+
Sbjct: 696 HLVSAFML-AENISHGLLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFL--SYHRNPLPEY 752
Query: 430 MATGHPMVISSDDPAMF 446
++ G + +S+DDP F
Sbjct: 753 LSRGLMVSLSTDDPLQF 769
>gi|21361112 solute carrier family 30 (zinc transporter), member 3
[Homo sapiens]
Length = 388
Score = 30.8 bits (68), Expect = 3.1
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 182 LLRNFTLVTQHPEVIYTNQNVVWSKFETIFFTISGLIHYAPVFRDYVFRSMQEFYEDNVL 241
LL++F ++ + + Q T F+I L AP RD V R + E NV
Sbjct: 243 LLQSFGVLAASILIYFKPQYKAADPISTFLFSICALGSTAPTLRD-VLRILMEGTPRNVG 301
Query: 242 YMEIRARLLPVYELSGEHHDEEWSVKTYQEVA 273
+ +R LL V + H W++ VA
Sbjct: 302 FEPVRDTLLSVPGVRATHELHLWALTLTYHVA 333
>gi|116875765 tight junction protein 1 isoform b [Homo sapiens]
Length = 1668
Score = 29.6 bits (65), Expect = 6.8
Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 16/158 (10%)
Query: 44 MRLGGRLVLNTKEELANERLMTLKIAEMKEAMR-------TLIFPPSMHFFQAKHLIERS 96
+R R + ++E+L+ + + T A + +R IF P + K E
Sbjct: 607 LRSSKRNLRKSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEP 666
Query: 97 QVFNILRMMPKGAALHLHDIGIVTMDWLVRNVTYRPHCHICFTPRGIMQFRFA------- 149
++ I + P+ A GI+ + + + + H + TP + + +A
Sbjct: 667 DIYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVV 726
Query: 150 --HPTPRPSEKCSKWILLEDYRKRVQNVTEFDDSLLRN 185
+P + K + L + RK + + E L +N
Sbjct: 727 FLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKN 764
>gi|116875767 tight junction protein 1 isoform a [Homo sapiens]
Length = 1748
Score = 29.6 bits (65), Expect = 6.8
Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 16/158 (10%)
Query: 44 MRLGGRLVLNTKEELANERLMTLKIAEMKEAMR-------TLIFPPSMHFFQAKHLIERS 96
+R R + ++E+L+ + + T A + +R IF P + K E
Sbjct: 607 LRSSKRNLRKSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEP 666
Query: 97 QVFNILRMMPKGAALHLHDIGIVTMDWLVRNVTYRPHCHICFTPRGIMQFRFA------- 149
++ I + P+ A GI+ + + + + H + TP + + +A
Sbjct: 667 DIYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVV 726
Query: 150 --HPTPRPSEKCSKWILLEDYRKRVQNVTEFDDSLLRN 185
+P + K + L + RK + + E L +N
Sbjct: 727 FLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKN 764
>gi|72534720 IQ motif containing H isoform 1 [Homo sapiens]
Length = 1027
Score = 29.6 bits (65), Expect = 6.8
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 158 KCSKWIL-------LEDYRKRVQNVTEFDDSLLRNFTLVTQHPEVIYTNQNVVWSKFETI 210
KC KW+L LED+RK+ ++ QH + + + W KF
Sbjct: 676 KCYKWVLKESSRYGLEDWRKKWAQEPALVKISEELAGILAQHAQPVNEKRFPTWRKFLQT 735
Query: 211 FFTISGLIHYAP 222
F + G+I P
Sbjct: 736 FLSQGGVIEAFP 747
>gi|12232475 IQ motif containing H isoform 2 [Homo sapiens]
Length = 621
Score = 29.6 bits (65), Expect = 6.8
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 158 KCSKWIL-------LEDYRKRVQNVTEFDDSLLRNFTLVTQHPEVIYTNQNVVWSKFETI 210
KC KW+L LED+RK+ ++ QH + + + W KF
Sbjct: 337 KCYKWVLKESSRYGLEDWRKKWAQEPALVKISEELAGILAQHAQPVNEKRFPTWRKFLQT 396
Query: 211 FFTISGLIHYAP 222
F + G+I P
Sbjct: 397 FLSQGGVIEAFP 408
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,470,380
Number of Sequences: 37866
Number of extensions: 774572
Number of successful extensions: 2120
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2108
Number of HSP's gapped (non-prelim): 20
length of query: 511
length of database: 18,247,518
effective HSP length: 107
effective length of query: 404
effective length of database: 14,195,856
effective search space: 5735125824
effective search space used: 5735125824
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.