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Search of human proteins with 28557790
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28557790 zinc finger, CCHC domain containing 12 [Homo
sapiens]
(402 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28557790 zinc finger, CCHC domain containing 12 [Homo sapiens] 801 0.0
gi|221136806 zinc finger, CCHC domain containing 18 [Homo sapiens] 661 0.0
gi|52486265 paraneoplastic antigen MA1 [Homo sapiens] 150 2e-36
gi|11464969 paraneoplastic antigen MA2 [Homo sapiens] 149 6e-36
gi|156766066 paraneoplastic antigen like 5 [Homo sapiens] 145 8e-35
gi|156766064 paraneoplastic antigen like 5 [Homo sapiens] 145 8e-35
gi|24308384 paraneoplastic antigen like 5 [Homo sapiens] 145 8e-35
gi|142976816 paraneoplastic cancer-testis-brain antigen [Homo sa... 143 3e-34
gi|239746974 PREDICTED: hypothetical protein XP_002343900 [Homo ... 136 4e-32
gi|239746972 PREDICTED: hypothetical protein XP_002343899 [Homo ... 136 4e-32
gi|239746970 PREDICTED: hypothetical protein XP_002343898 [Homo ... 136 4e-32
gi|187607308 paraneoplastic antigen like 6A [Homo sapiens] 136 4e-32
gi|19923584 modulator of apoptosis 1 [Homo sapiens] 117 2e-26
gi|169217313 PREDICTED: similar to paraneoplastic antigen MA1 [H... 116 3e-26
gi|169216516 PREDICTED: similar to paraneoplastic antigen MA1 [H... 116 3e-26
gi|239746976 PREDICTED: similar to paraneoplastic antigen MA1 [H... 116 3e-26
gi|169216507 PREDICTED: similar to hCG1645335 [Homo sapiens] 111 1e-24
gi|169216732 PREDICTED: similar to hCG1645335 [Homo sapiens] 111 1e-24
gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [H... 55 1e-07
gi|169216749 PREDICTED: similar to Putative paraneoplastic antig... 55 1e-07
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens] 33 0.35
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa... 33 0.46
gi|51479166 bicaudal D homolog 2 isoform 1 [Homo sapiens] 33 0.60
gi|21735417 bicaudal D homolog 2 isoform 2 [Homo sapiens] 33 0.60
gi|50658061 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member... 32 1.3
gi|21735584 oxysterol-binding protein-like protein 3 isoform d [... 32 1.3
gi|21735582 oxysterol-binding protein-like protein 3 isoform c [... 32 1.3
gi|10863995 zinc finger protein 410 [Homo sapiens] 32 1.3
gi|89242137 Meckel syndrome, type 1 [Homo sapiens] 31 1.7
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 31 1.7
>gi|28557790 zinc finger, CCHC domain containing 12 [Homo sapiens]
Length = 402
Score = 801 bits (2069), Expect = 0.0
Identities = 402/402 (100%), Positives = 402/402 (100%)
Query: 1 MASIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEET 60
MASIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEET
Sbjct: 1 MASIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEET 60
Query: 61 FENWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLV 120
FENWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLV
Sbjct: 61 FENWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLV 120
Query: 121 FGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLL 180
FGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLL
Sbjct: 121 FGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLL 180
Query: 181 GGELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVE 240
GGELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVE
Sbjct: 181 GGELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVE 240
Query: 241 RAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDRAR 300
RAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDRAR
Sbjct: 241 RAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDRAR 300
Query: 301 PQDEVLVIDSPHNSRAQFPSTSGGSGYKNNGPGEMRRARKRKHTIRCSYCGEEGHSKETC 360
PQDEVLVIDSPHNSRAQFPSTSGGSGYKNNGPGEMRRARKRKHTIRCSYCGEEGHSKETC
Sbjct: 301 PQDEVLVIDSPHNSRAQFPSTSGGSGYKNNGPGEMRRARKRKHTIRCSYCGEEGHSKETC 360
Query: 361 DNESDKAQVFENLIITLQELTHTEMERSRVAPGEYNDFSEPL 402
DNESDKAQVFENLIITLQELTHTEMERSRVAPGEYNDFSEPL
Sbjct: 361 DNESDKAQVFENLIITLQELTHTEMERSRVAPGEYNDFSEPL 402
>gi|221136806 zinc finger, CCHC domain containing 18 [Homo sapiens]
Length = 403
Score = 661 bits (1706), Expect = 0.0
Identities = 339/403 (84%), Positives = 364/403 (90%), Gaps = 3/403 (0%)
Query: 1 MASIIARVGNSRRLNAPLPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEET 60
MASI A VGNSR+ NAPLPPWAHSMLRSLGRSL P++ MA+RNMKLFSGRVVPAQG+ET
Sbjct: 1 MASITACVGNSRQQNAPLPPWAHSMLRSLGRSLCPLVVKMAERNMKLFSGRVVPAQGKET 60
Query: 61 FENWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLV 120
FENWL QVN VLPDW+MSEEEKLKRLMKTLRGPAREVMR+LQA NPNLSVADFLRAMKLV
Sbjct: 61 FENWLIQVNEVLPDWSMSEEEKLKRLMKTLRGPAREVMRLLQAANPNLSVADFLRAMKLV 120
Query: 121 FGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLL 180
FGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGI+AEKDAN+TRLQQLLL
Sbjct: 121 FGESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGILAEKDANQTRLQQLLL 180
Query: 181 GGELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVE 240
G EL+RDLR RLK LRMYAN+QERLPNFLELI+M+REEEDWDDAFIKRKRPKRSE ++E
Sbjct: 181 GAELNRDLRFRLKHLLRMYANKQERLPNFLELIKMIREEEDWDDAFIKRKRPKRSEPIME 240
Query: 241 RAVSPVAFQGSPPIVIGSAD--CNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDR 298
RA SPVAFQG+ PI I SAD CNVIEIDDTLDDSDEDVILV S P L GAPP R R
Sbjct: 241 RAASPVAFQGAQPIAISSADCNCNVIEIDDTLDDSDEDVILVVSLYPSLTPTGAPPFRGR 300
Query: 299 ARPQDEVLVIDSPHNSRAQFPSTSGGSGYKNNGPGEMRRARKRKHTIRCSYCGEEGHSKE 358
ARP D+VLVIDSP+NS AQ STSGGSGYKN+GPG +RRARKRK+T RCSYCGEEGHSKE
Sbjct: 301 ARPLDQVLVIDSPNNSGAQSLSTSGGSGYKNDGPGNIRRARKRKYTTRCSYCGEEGHSKE 360
Query: 359 TCDNESDKAQVFENLIITLQELTHTEMERSRVAPGEYNDFSEP 401
TCDNES+KAQVFENLIITLQELTHTE ERS+ PGE++D SEP
Sbjct: 361 TCDNESNKAQVFENLIITLQELTHTE-ERSKEVPGEHSDASEP 402
>gi|52486265 paraneoplastic antigen MA1 [Homo sapiens]
Length = 353
Score = 150 bits (380), Expect = 2e-36
Identities = 88/218 (40%), Positives = 129/218 (59%), Gaps = 6/218 (2%)
Query: 5 IARV-GNSRRLNAPLPPWAHSMLRS-LGRSLGPIMASMADRNMKLFSGRVVPAQGEETFE 62
+ARV G P P ML L + P++ S+ + + LFSGR +P GEETF+
Sbjct: 119 VARVLGFQNPTPTPGPEMPAEMLNYILDNVIQPLVESIWYKRLTLFSGRDIPGPGEETFD 178
Query: 63 NWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFG 122
WL N VL +W +S+ EK +RLM++LRGPA +V+R+L++ NP ++ A+ L+A++ VFG
Sbjct: 179 PWLEHTNEVLEEWQVSDVEKRRRLMESLRGPAADVIRILKSNNPAITTAECLKALEQVFG 238
Query: 123 ESESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGG 182
ESS A KF NT Q GEK S YVIRLE LQ ++ G I + + N+ RL+Q++ G
Sbjct: 239 SVESSRDAQIKFLNTYQNPGEKLSAYVIRLEPLLQKVVEKGAIDKDNVNQARLEQVIAGA 298
Query: 183 ELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEE 220
S +R + L + + PN +L+ +REEE
Sbjct: 299 NHSGAIRRQ----LWLTGAGEGPAPNLFQLLVQIREEE 332
>gi|11464969 paraneoplastic antigen MA2 [Homo sapiens]
Length = 364
Score = 149 bits (375), Expect = 6e-36
Identities = 79/205 (38%), Positives = 131/205 (63%), Gaps = 6/205 (2%)
Query: 22 AHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDWNMSEEE 81
AH + +++ + P++ M R +++FSG VPA EE+FE WL Q ++ +W ++E E
Sbjct: 143 AHLLGQAMAHAPQPLLP-MRYRKLRVFSGSAVPAPEEESFEVWLEQATEIVKEWPVTEAE 201
Query: 82 KLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFGESESSVTAHGKFFNTLQAQ 141
K + L ++LRGPA ++M ++QA NP++SV + L A K VFG ES TA ++ T Q +
Sbjct: 202 KKRWLAESLRGPALDLMHIVQADNPSISVEECLEAFKQVFGSLESRRTAQVRYLKTYQEE 261
Query: 142 GEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDFLRMYAN 201
GEK S YV+RLE L+ A++ I + A++ RL+Q++ G L++ L RL++
Sbjct: 262 GEKVSAYVLRLETLLRRAVEKRAIPRRIADQVRLEQVMAGATLNQMLWCRLREL-----K 316
Query: 202 EQERLPNFLELIRMVREEEDWDDAF 226
+Q P+FLEL++++REEE+ + +F
Sbjct: 317 DQGPPPSFLELMKVIREEEEEEASF 341
>gi|156766066 paraneoplastic antigen like 5 [Homo sapiens]
Length = 448
Score = 145 bits (365), Expect = 8e-35
Identities = 79/200 (39%), Positives = 124/200 (62%), Gaps = 7/200 (3%)
Query: 33 LGPIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDWNMSEEEKLKRLMKTLRG 92
L P SM R +K+FSG P+ GEETFE+WL QV ++P W +SE EK +RL+++LRG
Sbjct: 147 LEPPKESMWYRKLKVFSGTASPSPGEETFEDWLEQVTEIMPIWQVSEVEKRRRLLESLRG 206
Query: 93 PAREVMRVLQATNPNLSVADFLRAMKLVFGESESSVTAHGKFFNTLQAQGEKASLYVIRL 152
PA +MRVLQA N +++V L A+K +FG+ E + +F T GEK S +++RL
Sbjct: 207 PALSIMRVLQANNDSITVEQCLDALKQIFGDKEDFRASQFRFLQTSPKIGEKVSTFLLRL 266
Query: 153 EVQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDFLRMYANEQERLPNFLEL 212
E LQ A+ ++ + + RL+ LL ++ LR +L+ +++ PNFLEL
Sbjct: 267 EPLLQKAVHKSPLSVRSTDMIRLKHLLARVAMTPALRGKLE-----LLDQRGCPPNFLEL 321
Query: 213 IRMVREEEDWD--DAFIKRK 230
++++R+EE+W+ +A +K K
Sbjct: 322 MKLIRDEEEWENTEAVMKNK 341
>gi|156766064 paraneoplastic antigen like 5 [Homo sapiens]
Length = 448
Score = 145 bits (365), Expect = 8e-35
Identities = 79/200 (39%), Positives = 124/200 (62%), Gaps = 7/200 (3%)
Query: 33 LGPIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDWNMSEEEKLKRLMKTLRG 92
L P SM R +K+FSG P+ GEETFE+WL QV ++P W +SE EK +RL+++LRG
Sbjct: 147 LEPPKESMWYRKLKVFSGTASPSPGEETFEDWLEQVTEIMPIWQVSEVEKRRRLLESLRG 206
Query: 93 PAREVMRVLQATNPNLSVADFLRAMKLVFGESESSVTAHGKFFNTLQAQGEKASLYVIRL 152
PA +MRVLQA N +++V L A+K +FG+ E + +F T GEK S +++RL
Sbjct: 207 PALSIMRVLQANNDSITVEQCLDALKQIFGDKEDFRASQFRFLQTSPKIGEKVSTFLLRL 266
Query: 153 EVQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDFLRMYANEQERLPNFLEL 212
E LQ A+ ++ + + RL+ LL ++ LR +L+ +++ PNFLEL
Sbjct: 267 EPLLQKAVHKSPLSVRSTDMIRLKHLLARVAMTPALRGKLE-----LLDQRGCPPNFLEL 321
Query: 213 IRMVREEEDWD--DAFIKRK 230
++++R+EE+W+ +A +K K
Sbjct: 322 MKLIRDEEEWENTEAVMKNK 341
>gi|24308384 paraneoplastic antigen like 5 [Homo sapiens]
Length = 448
Score = 145 bits (365), Expect = 8e-35
Identities = 79/200 (39%), Positives = 124/200 (62%), Gaps = 7/200 (3%)
Query: 33 LGPIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDWNMSEEEKLKRLMKTLRG 92
L P SM R +K+FSG P+ GEETFE+WL QV ++P W +SE EK +RL+++LRG
Sbjct: 147 LEPPKESMWYRKLKVFSGTASPSPGEETFEDWLEQVTEIMPIWQVSEVEKRRRLLESLRG 206
Query: 93 PAREVMRVLQATNPNLSVADFLRAMKLVFGESESSVTAHGKFFNTLQAQGEKASLYVIRL 152
PA +MRVLQA N +++V L A+K +FG+ E + +F T GEK S +++RL
Sbjct: 207 PALSIMRVLQANNDSITVEQCLDALKQIFGDKEDFRASQFRFLQTSPKIGEKVSTFLLRL 266
Query: 153 EVQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDFLRMYANEQERLPNFLEL 212
E LQ A+ ++ + + RL+ LL ++ LR +L+ +++ PNFLEL
Sbjct: 267 EPLLQKAVHKSPLSVRSTDMIRLKHLLARVAMTPALRGKLE-----LLDQRGCPPNFLEL 321
Query: 213 IRMVREEEDWD--DAFIKRK 230
++++R+EE+W+ +A +K K
Sbjct: 322 MKLIRDEEEWENTEAVMKNK 341
>gi|142976816 paraneoplastic cancer-testis-brain antigen [Homo
sapiens]
Length = 463
Score = 143 bits (360), Expect = 3e-34
Identities = 100/361 (27%), Positives = 167/361 (46%), Gaps = 55/361 (15%)
Query: 8 VGNSRRLNAP---LPPWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFENW 64
+G+ +AP + P + ++LG ++ P++ M R +++FSG + G F+ W
Sbjct: 124 LGSDTNCSAPRVTISPEFWTWAQTLGAAVQPLLEQMLYRELRVFSGNTISIPGALAFDAW 183
Query: 65 LTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFGES 124
L +L W + E EK +RLM+ LRGPA +V+ L+A+N +++V + L A++ VFG
Sbjct: 184 LEHTTEMLQMWQVPEGEKRRRLMECLRGPALQVVSGLRASNASITVEECLAALQQVFGPV 243
Query: 125 ESSVTAHGKFFNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGGEL 184
ES A K Q GEK S +V+RLE LQ A++ +++ ++ N+TRL+++L G L
Sbjct: 244 ESHKIAQVKLCKAYQEAGEKVSSFVLRLEPLLQRAVENNVVSRRNVNQTRLKRVLSGATL 303
Query: 185 SRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVERAVS 244
LR +LK ++ + P FL L++++REEE+W+ + + R +
Sbjct: 304 PDKLRDKLK-----LMKQRRKPPGFLALVKLLREEEEWEATLGPDRESLEGLEVAPRPPA 358
Query: 245 PVAFQGSPPIVIGSADCNVIEIDDTLDDSDEDVILVESQDPPLPSWGAPPLRDRARPQDE 304
+ G+ P+ +V PS G R R + +
Sbjct: 359 RITGVGAVPLPASGNSFDV-----------------------RPSQGYRRRRGRGQHR-- 393
Query: 305 VLVIDSPHNSRAQFPSTSGGSGYKNNGPGEMRRARKRKHTIRCSYCGEEGHSKETCDNES 364
GG + R +RKRK C CGE+GH + C N S
Sbjct: 394 -----------------RGGVARAGS-----RGSRKRKRHTFCYSCGEDGHIRVQCINPS 431
Query: 365 D 365
+
Sbjct: 432 N 432
>gi|239746974 PREDICTED: hypothetical protein XP_002343900 [Homo
sapiens]
Length = 399
Score = 136 bits (342), Expect = 4e-32
Identities = 83/230 (36%), Positives = 130/230 (56%), Gaps = 6/230 (2%)
Query: 26 LRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDWN-MSEEEKLK 84
LRS+G+++ P + ++ +++ +FSGR PA GEE+FE WL +L W +SE E+ +
Sbjct: 136 LRSIGQAVQPWVEAVRYQSLGVFSGRDQPAPGEESFEVWLDHTTEMLHVWQGVSERERRR 195
Query: 85 RLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFGESESSVTAHGKFFNTLQAQGEK 144
RL++ LRG A +++ L A NP + D L A+ VFG++ES T K Q GE+
Sbjct: 196 RLLEGLRGTALQLVHALLAENPARTAQDCLAALAQVFGDNESQATIRVKCLTAQQQSGER 255
Query: 145 ASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDFLRMYANEQE 204
S +V+RLEV LQ A++ +A A+R RL+Q+L L+ L L+ LRM
Sbjct: 256 LSAFVLRLEVLLQKAMEKEALARASADRVRLRQMLTRAHLTEPLDEALRK-LRMAG---- 310
Query: 205 RLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVERAVSPVAFQGSPPI 254
R P+FLE++ +VRE E W+ + + R + E RA + + S +
Sbjct: 311 RSPSFLEMLGLVRESEAWEASLARSVRAQTQEGAGARAGAQAVARASTKV 360
>gi|239746972 PREDICTED: hypothetical protein XP_002343899 [Homo
sapiens]
Length = 399
Score = 136 bits (342), Expect = 4e-32
Identities = 83/230 (36%), Positives = 130/230 (56%), Gaps = 6/230 (2%)
Query: 26 LRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDWN-MSEEEKLK 84
LRS+G+++ P + ++ +++ +FSGR PA GEE+FE WL +L W +SE E+ +
Sbjct: 136 LRSIGQAVQPWVEAVRCQSLGVFSGRDQPAPGEESFEVWLDHTTEMLHVWQGVSERERRR 195
Query: 85 RLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFGESESSVTAHGKFFNTLQAQGEK 144
RL++ LRG A +++ L A NP + D L A+ VFG++ES T K Q GE+
Sbjct: 196 RLLEGLRGTALQLVHALLAENPARTAQDCLAALAQVFGDNESQATIRVKCLTAQQQSGER 255
Query: 145 ASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDFLRMYANEQE 204
S +V+RLEV LQ A++ +A A+R RL+Q+L L+ L L+ LRM
Sbjct: 256 LSAFVLRLEVLLQKAMEKEALARASADRVRLRQMLTRAHLTEPLDEALRK-LRMAG---- 310
Query: 205 RLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVERAVSPVAFQGSPPI 254
R P+FLE++ +VRE E W+ + + R + E RA + + S +
Sbjct: 311 RSPSFLEMLGLVRESEAWEASLARSVRAQTQEGAGARAGAQAVARASTKV 360
>gi|239746970 PREDICTED: hypothetical protein XP_002343898 [Homo
sapiens]
Length = 399
Score = 136 bits (342), Expect = 4e-32
Identities = 83/230 (36%), Positives = 130/230 (56%), Gaps = 6/230 (2%)
Query: 26 LRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDWN-MSEEEKLK 84
LRS+G+++ P + ++ +++ +FSGR PA GEE+FE WL +L W +SE E+ +
Sbjct: 136 LRSIGQAVQPWVEAVRCQSLGVFSGRDQPAPGEESFEVWLDHTTEMLHVWQGVSERERRR 195
Query: 85 RLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFGESESSVTAHGKFFNTLQAQGEK 144
RL++ LRG A +++ L A NP + D L A+ VFG++ES T K Q GE+
Sbjct: 196 RLLEGLRGTALQLVHALLAENPARTAQDCLAALAQVFGDNESQATIRVKCLTAQQQSGER 255
Query: 145 ASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDFLRMYANEQE 204
S +V+RLEV LQ A++ +A A+R RL+Q+L L+ L L+ LRM
Sbjct: 256 LSAFVLRLEVLLQKAMEKEALARASADRVRLRQMLTRAHLTEPLDEALRK-LRMAG---- 310
Query: 205 RLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVERAVSPVAFQGSPPI 254
R P+FLE++ +VRE E W+ + + R + E RA + + S +
Sbjct: 311 RSPSFLEMLGLVRESEAWEASLARSVRAQTQEGAGARAGAQAVARASTKV 360
>gi|187607308 paraneoplastic antigen like 6A [Homo sapiens]
Length = 399
Score = 136 bits (342), Expect = 4e-32
Identities = 83/230 (36%), Positives = 130/230 (56%), Gaps = 6/230 (2%)
Query: 26 LRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDWN-MSEEEKLK 84
LRS+G+++ P + ++ +++ +FSGR PA GEE+FE WL +L W +SE E+ +
Sbjct: 136 LRSIGQAVQPWVEAVRYQSLGVFSGRDQPAPGEESFEVWLDHTTEMLHVWQGVSERERRR 195
Query: 85 RLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFGESESSVTAHGKFFNTLQAQGEK 144
RL++ LRG A +++ L A NP + D L A+ VFG++ES T K Q GE+
Sbjct: 196 RLLEGLRGTALQLVHALLAENPARTAQDCLAALAQVFGDNESQATIRVKCLTAQQQSGER 255
Query: 145 ASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDFLRMYANEQE 204
S +V+RLEV LQ A++ +A A+R RL+Q+L L+ L L+ LRM
Sbjct: 256 LSAFVLRLEVLLQKAMEKEALARASADRVRLRQMLTRAHLTEPLDEALRK-LRMAG---- 310
Query: 205 RLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVERAVSPVAFQGSPPI 254
R P+FLE++ +VRE E W+ + + R + E RA + + S +
Sbjct: 311 RSPSFLEMLGLVRESEAWEASLARSVRAQTQEGAGARAGAQAVARASTKV 360
>gi|19923584 modulator of apoptosis 1 [Homo sapiens]
Length = 351
Score = 117 bits (292), Expect = 2e-26
Identities = 66/200 (33%), Positives = 112/200 (56%), Gaps = 8/200 (4%)
Query: 21 WAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDWNMSEE 80
WA + ++L +L P + + + +++FSGR P GEE F W+ ++ W + +
Sbjct: 142 WAPMLAQAL-EALQPALQCLKYKKLRVFSGRESPEPGEEEFGRWMFHTTQMIKAWQVPDV 200
Query: 81 EKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFGESESSVTAHGKFFNTLQA 140
EK +RL+++LRGPA +V+RVL+ NP ++V + L+A++ VFG +++ K+ T Q
Sbjct: 201 EKRRRLLESLRGPALDVIRVLKINNPLITVDECLQALEEVFGVTDNPRELQVKYLTTYQK 260
Query: 141 QGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDFLRMYA 200
EK S YV+RLE LQ +Q G I N+ RL Q ++ G + + +R L
Sbjct: 261 DEEKLSAYVLRLEPLLQKLVQRGAIERDAVNQARLDQ-VIAGAVHKTIRRELN------L 313
Query: 201 NEQERLPNFLELIRMVREEE 220
E P FL+L+ ++++ E
Sbjct: 314 PEDGPAPGFLQLLVLIKDYE 333
>gi|169217313 PREDICTED: similar to paraneoplastic antigen MA1 [Homo
sapiens]
Length = 601
Score = 116 bits (291), Expect = 3e-26
Identities = 84/257 (32%), Positives = 131/257 (50%), Gaps = 15/257 (5%)
Query: 20 PWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDW-NMS 78
PW + SL ++L P++ +MA R ++ FSGR P EE+FE+WL +L W + S
Sbjct: 278 PWK---VISLPQTLRPLVKTMAYRELRPFSGREQPGCVEESFESWLEDAKDMLQLWCHAS 334
Query: 79 EEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFGESESSVTAHGKFFNTL 138
E E+ +RL+ +L G A +++ L +P+ S D L A+ VF ++ +T+ KF
Sbjct: 335 ERERRRRLLDSLDGLALDIVSGLLEEDPDFSAQDCLTALGQVFRSRDTWMTSRMKFLTCT 394
Query: 139 QAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDFLRM 198
Q E +V+RLE LQ A++ G + AN RL+Q+L S L+D LR
Sbjct: 395 QGPQEGLFAFVVRLEGLLQKAVEKGAVHPAMANHLRLRQVLSRARPSE----ALQDTLRR 450
Query: 199 YANEQERLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVERAVSPVAFQGSPPIVIGS 258
E+ R P+FL L+R++R+ E W + RS+ V A +PV +
Sbjct: 451 MQLER-RPPDFLRLLRLIRDMEAWAASL------ARSQQGVAWAAAPVESEDPAAAQASP 503
Query: 259 ADCNVIEIDDTLDDSDE 275
A + E D +D+DE
Sbjct: 504 AQGDASEADPGAEDADE 520
>gi|169216516 PREDICTED: similar to paraneoplastic antigen MA1 [Homo
sapiens]
Length = 541
Score = 116 bits (291), Expect = 3e-26
Identities = 84/257 (32%), Positives = 131/257 (50%), Gaps = 15/257 (5%)
Query: 20 PWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDW-NMS 78
PW + SL ++L P++ +MA R ++ FSGR P EE+FE+WL +L W + S
Sbjct: 218 PWK---VISLPQTLRPLVKTMAYRELRPFSGREQPGCVEESFESWLEDAKDMLQLWCHAS 274
Query: 79 EEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFGESESSVTAHGKFFNTL 138
E E+ +RL+ +L G A +++ L +P+ S D L A+ VF ++ +T+ KF
Sbjct: 275 ERERRRRLLDSLDGLALDIVSGLLEEDPDFSAQDCLTALGQVFRSRDTWMTSRMKFLTCT 334
Query: 139 QAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDFLRM 198
Q E +V+RLE LQ A++ G + AN RL+Q+L S L+D LR
Sbjct: 335 QGPQEGLFAFVVRLEGLLQKAVEKGAVHPAMANHLRLRQVLSRARPSE----ALQDTLRR 390
Query: 199 YANEQERLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVERAVSPVAFQGSPPIVIGS 258
E+ R P+FL L+R++R+ E W + RS+ V A +PV +
Sbjct: 391 MQLER-RPPDFLRLLRLIRDMEAWAASL------ARSQQGVAWAAAPVESEDPAAAQASP 443
Query: 259 ADCNVIEIDDTLDDSDE 275
A + E D +D+DE
Sbjct: 444 AQGDASEADPGAEDADE 460
>gi|239746976 PREDICTED: similar to paraneoplastic antigen MA1 [Homo
sapiens]
Length = 601
Score = 116 bits (291), Expect = 3e-26
Identities = 84/257 (32%), Positives = 131/257 (50%), Gaps = 15/257 (5%)
Query: 20 PWAHSMLRSLGRSLGPIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDW-NMS 78
PW + SL ++L P++ +MA R ++ FSGR P EE+FE+WL +L W + S
Sbjct: 278 PWK---VISLPQTLRPLVKTMAYRELRPFSGREQPGCVEESFESWLEDAKDMLQLWCHAS 334
Query: 79 EEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFGESESSVTAHGKFFNTL 138
E E+ +RL+ +L G A +++ L +P+ S D L A+ VF ++ +T+ KF
Sbjct: 335 ERERRRRLLDSLDGLALDIVSGLLEEDPDFSAQDCLTALGQVFRSRDTWMTSRMKFLTCT 394
Query: 139 QAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDFLRM 198
Q E +V+RLE LQ A++ G + AN RL+Q+L S L+D LR
Sbjct: 395 QGPQEGLFAFVVRLEGLLQKAVEKGAVHPAMANHLRLRQVLSRARPSE----ALQDTLRR 450
Query: 199 YANEQERLPNFLELIRMVREEEDWDDAFIKRKRPKRSESMVERAVSPVAFQGSPPIVIGS 258
E+ R P+FL L+R++R+ E W + RS+ V A +PV +
Sbjct: 451 MQLER-RPPDFLRLLRLIRDMEAWAASL------ARSQQGVAWAAAPVESEDPAAAQASP 503
Query: 259 ADCNVIEIDDTLDDSDE 275
A + E D +D+DE
Sbjct: 504 AQGDASEADPGAEDADE 520
>gi|169216507 PREDICTED: similar to hCG1645335 [Homo sapiens]
Length = 409
Score = 111 bits (278), Expect = 1e-24
Identities = 84/242 (34%), Positives = 121/242 (50%), Gaps = 12/242 (4%)
Query: 35 PIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDW-NMSEEEKLKRLMKTLRGP 93
P++ + A R ++ FS R P EE+FE+W+ +L W + SE EK + L+++L GP
Sbjct: 97 PVLENRAYRELRPFSRREQPGCEEESFESWVEHAKDMLQLWCHASEREKKRWLLESLGGP 156
Query: 94 AREVMRVLQATNPNLSVADFLRAMKLVFGESESSVTAHGKFFNTLQAQGEKASLYVIRLE 153
A EV+ L + NLS D L A+ VF ++ +T+ KF Q E +V+RLE
Sbjct: 157 ALEVVSGLLEEDTNLSALDCLAALGQVFRNQDTRMTSRLKFLTCTQGPQEGLFAFVVRLE 216
Query: 154 VQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDFLRMYANEQERLPNFLELI 213
LQ A++ G + AN RLQQ+L S L+D LR E +R P FL L+
Sbjct: 217 GLLQRAVEKGAVCPALANYLRLQQVLSWARPSE----ALQDTLRGMQLE-KRPPGFLGLL 271
Query: 214 RMVREEEDWDDAFIKRKRPKRSESMVERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDS 273
R++RE E W AF P RS+ V A +PV + A N E +D+
Sbjct: 272 RLIREMEAW-AAF-----PARSQQGVAWAAAPVESEDPAAAQASPAQGNASEAGPGAEDA 325
Query: 274 DE 275
E
Sbjct: 326 AE 327
>gi|169216732 PREDICTED: similar to hCG1645335 [Homo sapiens]
Length = 409
Score = 111 bits (278), Expect = 1e-24
Identities = 84/242 (34%), Positives = 121/242 (50%), Gaps = 12/242 (4%)
Query: 35 PIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDW-NMSEEEKLKRLMKTLRGP 93
P++ + A R ++ FS R P EE+FE+W+ +L W + SE EK + L+++L GP
Sbjct: 97 PVLENRAYRELRPFSRREQPGCEEESFESWVEHAKDMLQLWCHASEREKKRWLLESLGGP 156
Query: 94 AREVMRVLQATNPNLSVADFLRAMKLVFGESESSVTAHGKFFNTLQAQGEKASLYVIRLE 153
A EV+ L + NLS D L A+ VF ++ +T+ KF Q E +V+RLE
Sbjct: 157 ALEVVSGLLEEDTNLSALDCLAALGQVFRNQDTRMTSRLKFLTCTQGPQEGLFAFVVRLE 216
Query: 154 VQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDFLRMYANEQERLPNFLELI 213
LQ A++ G + AN RLQQ+L S L+D LR E +R P FL L+
Sbjct: 217 GLLQRAVEKGAVCPALANYLRLQQVLSWARPSE----ALQDTLRGMQLE-KRPPGFLGLL 271
Query: 214 RMVREEEDWDDAFIKRKRPKRSESMVERAVSPVAFQGSPPIVIGSADCNVIEIDDTLDDS 273
R++RE E W AF P RS+ V A +PV + A N E +D+
Sbjct: 272 RLIREMEAW-AAF-----PARSQQGVAWAAAPVESEDPAAAQASPAQGNASEAGPGAEDA 325
Query: 274 DE 275
E
Sbjct: 326 AE 327
>gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [Homo
sapiens]
Length = 340
Score = 54.7 bits (130), Expect = 1e-07
Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 32 SLGPIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDW-NMSEEEKLKRLMKTL 90
+L ++ + A + ++ FSGR P EE+FE+W+ +L W + SE E+ + L+++L
Sbjct: 228 TLQAVLENRAYQELRPFSGREQPGCEEESFESWMEHAKDMLQLWYHASERERKRWLLESL 287
Query: 91 RGPAREVMRVLQATNPNLSVAD-------FLRAMKLVFGESESSVTAHGKF 134
GPA +V+ L +PNL+ D + + FG + +T+ KF
Sbjct: 288 GGPALDVVSGLLEEDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKF 338
>gi|169216749 PREDICTED: similar to Putative paraneoplastic
antigen-like protein 6B-like protein [Homo sapiens]
Length = 340
Score = 54.7 bits (130), Expect = 1e-07
Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 32 SLGPIMASMADRNMKLFSGRVVPAQGEETFENWLTQVNGVLPDW-NMSEEEKLKRLMKTL 90
+L ++ + A + ++ FSGR P EE+FE+W+ +L W + SE E+ + L+++L
Sbjct: 228 TLQAVLENRAYQELRPFSGREQPGCKEESFESWMEHAKDMLQLWYHASERERKRWLLESL 287
Query: 91 RGPAREVMRVLQATNPNLSVAD-------FLRAMKLVFGESESSVTAHGKF 134
GPA +V+ L +PNL+ D + + FG + +T+ KF
Sbjct: 288 GGPALDVVSGLLEEDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKF 338
>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
Length = 1684
Score = 33.5 bits (75), Expect = 0.35
Identities = 30/145 (20%), Positives = 68/145 (46%), Gaps = 13/145 (8%)
Query: 78 SEEEKLKRLMKTLRGPAREV-MRVLQATNPNLSVADFLRAMKLVFGESESSVTAHGKFFN 136
S+ E L ++TL+ A+ + +++L+ V L A KL + E + H N
Sbjct: 1066 SDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKL---QKEQKIKEHATTVN 1122
Query: 137 TLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDFL 196
L E+ + + + + QLQ +Q + +KDA +T L + + D +K+
Sbjct: 1123 EL----EELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMNMEIA-----DYERLMKELN 1173
Query: 197 RMYANEQERLPNFLELIRMVREEED 221
+ N+ ++ + + I++ +++++
Sbjct: 1174 QKLTNKNNKIEDLEQEIKIQKQKQE 1198
>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Homo sapiens]
Length = 269
Score = 33.1 bits (74), Expect = 0.46
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 282 SQDPPLPSWGAPPLRDRARP----QDEVLVIDSPHNSRAQ--FPSTSGGSGYKNNGPGEM 335
++ PPLP PP + P ++ + S ++S Q P G +N+ G
Sbjct: 176 TEQPPLPQQTQPPAKQSNNPPLQRSSSLIQLTSQNSSPNQQRTPQVIGVMQSQNSSAGN- 234
Query: 336 RRARKRKHTIRCSYCGEEGHSKETC 360
R + + C CGE+GH C
Sbjct: 235 -RGPRPLEQVTCYKCGEKGHYANRC 258
>gi|51479166 bicaudal D homolog 2 isoform 1 [Homo sapiens]
Length = 855
Score = 32.7 bits (73), Expect = 0.60
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 12/144 (8%)
Query: 77 MSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFGESESSVT-AHGKFF 135
M E KLK L+ T R + VL+A VA L +K + ++ VT K
Sbjct: 673 MEEILKLKSLLSTKREQITTLRTVLKANKQTAEVA--LANLKSKYENEKAMVTETMMKLR 730
Query: 136 NTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDF 195
N L+A E A+ + ++++A D T+L ++ + D + L
Sbjct: 731 NELKALKEDAATF---------SSLRAMFATRCDEYITQLDEMQRQLAAAEDEKKTLNSL 781
Query: 196 LRMYANEQERLPNFLELIRMVREE 219
LRM ++ L LEL+ + E+
Sbjct: 782 LRMAIQQKLALTQRLELLELDHEQ 805
>gi|21735417 bicaudal D homolog 2 isoform 2 [Homo sapiens]
Length = 824
Score = 32.7 bits (73), Expect = 0.60
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 12/144 (8%)
Query: 77 MSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFGESESSVT-AHGKFF 135
M E KLK L+ T R + VL+A VA L +K + ++ VT K
Sbjct: 673 MEEILKLKSLLSTKREQITTLRTVLKANKQTAEVA--LANLKSKYENEKAMVTETMMKLR 730
Query: 136 NTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDANRTRLQQLLLGGELSRDLRLRLKDF 195
N L+A E A+ + ++++A D T+L ++ + D + L
Sbjct: 731 NELKALKEDAATF---------SSLRAMFATRCDEYITQLDEMQRQLAAAEDEKKTLNSL 781
Query: 196 LRMYANEQERLPNFLELIRMVREE 219
LRM ++ L LEL+ + E+
Sbjct: 782 LRMAIQQKLALTQRLELLELDHEQ 805
>gi|50658061 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1
[Homo sapiens]
Length = 1168
Score = 31.6 bits (70), Expect = 1.3
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 280 VESQDPPLPSWGAPPLRDRARPQDEVLVIDSPHNSRAQFPSTSGGSGYKNNGPGEMRRAR 339
+E Q+PP P+ G+P + R + + ++PH R F S + G P +
Sbjct: 602 IECQEPPQPARGSPGVSQRKLMRYHSVSTETPH-ERKDFESKANHLGDSGGTP-----VK 655
Query: 340 KRKHTIRCSYCGEEGHSKETCDNES 364
R+H+ R ++ CD+ S
Sbjct: 656 TRRHSWRQQIFLRVATPQKACDSSS 680
>gi|21735584 oxysterol-binding protein-like protein 3 isoform d
[Homo sapiens]
Length = 820
Score = 31.6 bits (70), Expect = 1.3
Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 27/138 (19%)
Query: 88 KTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFGESESSV----------TAHGKF--- 134
K GP R L ++NPNLS DF G SS AH +
Sbjct: 262 KPFSGPVR-----LHSSNPNLSTLDFGEEKNYSDGSETSSEFSKMQEDLCHIAHKVYFTL 316
Query: 135 ---FNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDA---NRTRLQQLLLGGELSRDL 188
FN + A+ EK +E ++ A +I K+A +R + L +LS +
Sbjct: 317 RSAFNIMSAEREKLKQL---MEQDASSSPSAQVIGLKNALSSENSRDENRALVHQLSNES 373
Query: 189 RLRLKDFLRMYANEQERL 206
RL + D L + + QE L
Sbjct: 374 RLSITDSLSEFFDAQEVL 391
>gi|21735582 oxysterol-binding protein-like protein 3 isoform c
[Homo sapiens]
Length = 851
Score = 31.6 bits (70), Expect = 1.3
Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 27/138 (19%)
Query: 88 KTLRGPAREVMRVLQATNPNLSVADFLRAMKLVFGESESSV----------TAHGKF--- 134
K GP R L ++NPNLS DF G SS AH +
Sbjct: 293 KPFSGPVR-----LHSSNPNLSTLDFGEEKNYSDGSETSSEFSKMQEDLCHIAHKVYFTL 347
Query: 135 ---FNTLQAQGEKASLYVIRLEVQLQNAIQAGIIAEKDA---NRTRLQQLLLGGELSRDL 188
FN + A+ EK +E ++ A +I K+A +R + L +LS +
Sbjct: 348 RSAFNIMSAEREKLKQL---MEQDASSSPSAQVIGLKNALSSENSRDENRALVHQLSNES 404
Query: 189 RLRLKDFLRMYANEQERL 206
RL + D L + + QE L
Sbjct: 405 RLSITDSLSEFFDAQEVL 422
>gi|10863995 zinc finger protein 410 [Homo sapiens]
Length = 478
Score = 31.6 bits (70), Expect = 1.3
Identities = 39/203 (19%), Positives = 79/203 (38%), Gaps = 18/203 (8%)
Query: 165 IAEKDANRTRLQQLLLGGELSRDLRLRLKDFLRMYANEQERLPNFLELIRMVREEEDWDD 224
+ E +A LL E S RL L D ++N + +P+ ++R +R D
Sbjct: 28 LVESEAKDITCLSLLPVTEASECSRLMLPDDTTNHSNSSKEVPSSA-VLRSLRVNVGPDG 86
Query: 225 AFIKRKRPKRSESMVERAVSPVAFQGSPP-------------IVIGSADCNVIEIDDTLD 271
+ + ++S + + S Q P +GS+ +++ + D +
Sbjct: 87 EETRAQTVQKSPEFLSTSESSSLLQDLQPSDSTSFILLNLTRAGLGSSAEHLVFVQDEAE 146
Query: 272 DSDEDVILVESQDPPLPSWGAPPLRDRARPQDEVLVIDSPHNSRAQFPSTSGGSGYKNNG 331
DS D + ES D +P + LR + D ++ ++ S++G + + +G
Sbjct: 147 DSGNDFLSSESTDSSIPWF----LRVQELAHDSLIAATRAQLAKNAKTSSNGENVHLGSG 202
Query: 332 PGEMRRARKRKHTIRCSYCGEEG 354
G+ + + + C EG
Sbjct: 203 DGQSKDSGPLPQVEKKLKCTVEG 225
>gi|89242137 Meckel syndrome, type 1 [Homo sapiens]
Length = 559
Score = 31.2 bits (69), Expect = 1.7
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 53 VPAQGEETFENWLTQVNGVLPDWNMSEEEKLKRLMKTLRGPAREVMRVLQATNPNLSVAD 112
+ +GE+ E W ++ V P EEE+ +R+ K L G +E + L T+ ++V
Sbjct: 251 IETEGEKQ-ELWKYTIDNVSPHAQPEEEERERRVFKDLYGRHKEYLSSLVGTDFEMTVPG 309
Query: 113 FLR 115
LR
Sbjct: 310 ALR 312
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 31.2 bits (69), Expect = 1.7
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 285 PPLPSWGAPPLRDRAR---PQDEVLVIDSPHNSRAQFPSTSGGSGYKNNGPGEMRRARKR 341
P PS +P +RD+A P +SP A PS+ G G G G RR R+R
Sbjct: 335 PDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSA--PSSQGRGGRAAGGAGRRRRRRRR 392
Query: 342 KHTIRCS 348
+ R S
Sbjct: 393 RRRSRSS 399
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,540,602
Number of Sequences: 37866
Number of extensions: 721494
Number of successful extensions: 2586
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2529
Number of HSP's gapped (non-prelim): 54
length of query: 402
length of database: 18,247,518
effective HSP length: 105
effective length of query: 297
effective length of database: 14,271,588
effective search space: 4238661636
effective search space used: 4238661636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.