Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MKS1 Sequence: fasta or formatted (559aa) NCBI GI: 89242137
Description:

Meckel syndrome, type 1

Referenced in:

Planar Cell Polarity

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         27           2
 C cysteine            1.1          6           1
 D aspartate           4.3         24           1
 E glutamate           9.7         54           4
 F phenylalanine       5.0         28           2
 G glycine             5.9         33           2
 H histidine           2.9         16           1
 I isoleucine          2.9         16           1
 K lysine              3.8         21           2
 L leucine             9.7         54           1
 M methionine          2.0         11           1
 N asparagine          2.7         15           2
 P proline             4.7         26           1
 Q glutamine           4.7         26           2
 R arginine            8.6         48           4
 S serine              7.9         44           3
 T threonine           7.0         39           2
 V valine              7.3         41           2
 W tryptophan          1.4          8           1
 Y tyrosine            3.9         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Meckel syndrome, type 1 
B9D2                  0.034   B9 protein domain 2 
B9D1                  0.026   B9 protein 
MICAL2                0.007   microtubule associated monoxygenase, calponin and LIM...
OTOF                  0.006   otoferlin isoform b 
OTOF                  0.006   otoferlin isoform d 
ZAK                   0.006   MLK-related kinase isoform 1 
ZCCHC12               0.005   zinc finger, CCHC domain containing 12 
OTOF                  0.005   otoferlin isoform c 
OTOF                  0.005   otoferlin isoform a 
NDOR1                 0.005   NADPH dependent diflavin oxidoreductase 1 isoform d...
NDOR1                 0.005   NADPH dependent diflavin oxidoreductase 1 isoform c...
NDOR1                 0.005   NADPH dependent diflavin oxidoreductase 1 isoform a...
NDOR1                 0.005   NADPH dependent diflavin oxidoreductase 1 isoform b [...
ARHGEF17              0.004   Rho guanine nucleotide exchange factor (GEF) 17 [Hom...
C6orf222              0.004   hypothetical protein LOC389384 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press