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Search of human proteins with 28372523
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28372523 intraflagellar transport protein IFT20 [Homo
sapiens]
(148 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens] 292 8e-80
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 55 2e-08
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 54 4e-08
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 54 5e-08
gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo sapi... 52 1e-07
gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo sapi... 52 1e-07
gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens] 52 2e-07
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens] 51 3e-07
gi|34147532 myosin, light chain 10, regulatory [Homo sapiens] 49 1e-06
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ... 49 2e-06
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 48 3e-06
gi|170932471 hypothetical protein LOC79703 [Homo sapiens] 46 1e-05
gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens] 46 1e-05
gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens] 46 1e-05
gi|148236061 hypothetical protein LOC285501 [Homo sapiens] 45 2e-05
gi|61969666 arginine-fifty homeobox [Homo sapiens] 45 3e-05
gi|94680985 cyclin J-like [Homo sapiens] 44 4e-05
gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo ... 43 8e-05
gi|58294160 breast carcinoma amplified sequence 4 isoform a [Hom... 43 8e-05
gi|34147403 intraflagellar transport 81-like isoform 2 [Homo sap... 43 1e-04
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 42 1e-04
gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens] 42 1e-04
gi|239755619 PREDICTED: hypothetical protein [Homo sapiens] 42 2e-04
gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo ... 42 2e-04
gi|40807368 potassium channel regulator isoform 2 [Homo sapiens] 42 2e-04
gi|154146187 TFIIS central domain-containing protein 1 [Homo sap... 42 2e-04
gi|237858664 hypothetical protein LOC123207 isoform b [Homo sapi... 42 2e-04
gi|24497440 interleukin 12 receptor, beta 1 isoform 2 precursor ... 42 2e-04
gi|187608508 centromere protein L isoform 1 [Homo sapiens] 41 3e-04
gi|122939204 parkin co-regulated gene protein isoform 1 [Homo sa... 39 0.002
>gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens]
Length = 148
Score = 292 bits (747), Expect = 8e-80
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MAKDILGEAGLHFDELNKLRVLDPEVTQQTIELKEECKDFVDKIGQFQKIVGGLIELVDQ 60
MAKDILGEAGLHFDELNKLRVLDPEVTQQTIELKEECKDFVDKIGQFQKIVGGLIELVDQ
Sbjct: 1 MAKDILGEAGLHFDELNKLRVLDPEVTQQTIELKEECKDFVDKIGQFQKIVGGLIELVDQ 60
Query: 61 LAKEAENEKMKSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTGHRCSELAQI 120
LAKEAENEKMKSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTGHRCSELAQI
Sbjct: 61 LAKEAENEKMKSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTGHRCSELAQI 120
Query: 121 YSKAERSSTAATSSPNSRKENAARKVSG 148
YSKAERSSTAATSSPNSRKENAARKVSG
Sbjct: 121 YSKAERSSTAATSSPNSRKENAARKVSG 148
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 55.1 bits (131), Expect = 2e-08
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 67 NEKMKSLAV-SPRLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTGHRCSELAQIYSKAE 125
+E+ KS +V SPRLEC+G + AHC L L DSS+ PTS S+V GT + YS +E
Sbjct: 431 SEETKSCSVMSPRLECSGTVIAHCSLKLLDSSNPPTSASQVAGTADDDSDLYSPRYSFSE 490
Query: 126 RSSTAATSSPNSRKE 140
+ + S P S+ E
Sbjct: 491 -DTKSPLSVPRSKSE 504
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 54.3 bits (129), Expect = 4e-08
Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 55 IELVDQLAKEAENEKMKSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTG 111
++ + L KE + K +SLA+SP+LEC+G I AH L L SSDSP S SRV G TG
Sbjct: 441 VKPLQPLIKE-QKPKDQSLALSPKLECSGTILAHSNLRLLGSSDSPASASRVAGITG 496
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 53.9 bits (128), Expect = 5e-08
Identities = 29/54 (53%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 59 DQLAKEAENEKMK-SLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTG 111
DQL +E + + L SPRLEC+G IS HC L L SS+SP S SRV G TG
Sbjct: 779 DQLLQELRDPTLTFRLLGSPRLECSGTISPHCNLLLPGSSNSPASASRVAGITG 832
>gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo
sapiens]
Length = 312
Score = 52.4 bits (124), Expect = 1e-07
Identities = 27/51 (52%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 78 RLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTG-------HRCSELAQIY 121
RLEC G ISAHC L L SSDSP S SRV G TG +C++ Q+Y
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLY 99
>gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
sapiens]
Length = 341
Score = 52.4 bits (124), Expect = 1e-07
Identities = 27/51 (52%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 78 RLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTG-------HRCSELAQIY 121
RLEC G ISAHC L L SSDSP S SRV G TG +C++ Q+Y
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLY 99
>gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens]
Length = 629
Score = 51.6 bits (122), Expect = 2e-07
Identities = 25/44 (56%), Positives = 31/44 (70%)
Query: 68 EKMKSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTG 111
E + L + PRLEC+ I+AHC L L DSS+ PTS S+V GTTG
Sbjct: 581 ENGEGLTLWPRLECSSTITAHCSLNLLDSSNPPTSTSQVVGTTG 624
>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
Length = 638
Score = 51.2 bits (121), Expect = 3e-07
Identities = 26/41 (63%), Positives = 32/41 (78%), Gaps = 1/41 (2%)
Query: 70 MKSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGGTT 110
M+S +V+ RLEC+GAISAHC L L SSDSP S S++ GTT
Sbjct: 1 MESCSVT-RLECSGAISAHCSLHLPGSSDSPASASQIAGTT 40
>gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]
Length = 226
Score = 49.3 bits (116), Expect = 1e-06
Identities = 24/38 (63%), Positives = 29/38 (76%)
Query: 68 EKMKSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSR 105
E +SLA+SPRLE G ISAHC LCL+ SS+SP S S+
Sbjct: 54 EFKESLALSPRLERNGMISAHCNLCLTGSSNSPASASQ 91
>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
sapiens]
Length = 511
Score = 48.9 bits (115), Expect = 2e-06
Identities = 26/49 (53%), Positives = 31/49 (63%)
Query: 72 SLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTGHRCSELAQI 120
+LA+SPRLEC+G ISAHC L SS+SP SRV G + S L I
Sbjct: 137 NLALSPRLECSGKISAHCNPHLQGSSNSPAQASRVAGIYRYTVSFLLVI 185
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 48.1 bits (113), Expect = 3e-06
Identities = 24/41 (58%), Positives = 28/41 (68%)
Query: 71 KSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTG 111
+SLA+SP L C+ AISAHC L SSD P S S+V G TG
Sbjct: 1098 QSLALSPGLGCSSAISAHCNFRLPGSSDFPASASQVDGITG 1138
>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
Length = 677
Score = 46.2 bits (108), Expect = 1e-05
Identities = 23/39 (58%), Positives = 26/39 (66%)
Query: 72 SLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGGTT 110
SL + PR EC+GA+SAHC L L SSDS S RV G T
Sbjct: 108 SLTLLPRPECSGAVSAHCNLHLPGSSDSHASVPRVAGIT 146
>gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]
Length = 135
Score = 45.8 bits (107), Expect = 1e-05
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 69 KMKSLAVSPRLECTGAISAHCKLCLSDSSDS 99
+ +SLA+ PRLEC+G I AHC LCL SSDS
Sbjct: 100 RQRSLALLPRLECSGVILAHCNLCLLGSSDS 130
>gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]
Length = 475
Score = 45.8 bits (107), Expect = 1e-05
Identities = 24/43 (55%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 69 KMKSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTG 111
+ KS +V+ RLEC+G I AHC L L S DSP S S+ GTTG
Sbjct: 423 RTKSRSVT-RLECSGMILAHCNLRLPGSRDSPASASQAAGTTG 464
>gi|148236061 hypothetical protein LOC285501 [Homo sapiens]
Length = 109
Score = 45.4 bits (106), Expect = 2e-05
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 78 RLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTGHRCSELAQI 120
+LEC+G I AHC LCL S TS S+V GTTG + A++
Sbjct: 21 KLECSGPILAHCNLCLLGSRHPSTSASQVAGTTGEKTMRSARM 63
>gi|61969666 arginine-fifty homeobox [Homo sapiens]
Length = 315
Score = 44.7 bits (104), Expect = 3e-05
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 72 SLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTGHR 113
S + +LEC+G +SA+C L L S+D PTS SRV TT R
Sbjct: 35 SFTLLSKLECSGTVSAYCSLNLPGSTDPPTSASRVAATTAIR 76
>gi|94680985 cyclin J-like [Homo sapiens]
Length = 435
Score = 44.3 bits (103), Expect = 4e-05
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 75 VSPRLECTGAISAHCKLCLSDSSDSPTS-------PSRVGGTTGHRCSELAQIYSKAERS 127
+SPRL+C+G ISAHC L L SS+SP S P +V TTG + + +
Sbjct: 99 LSPRLKCSGMISAHCNLHLPGSSNSPASAPHPPPTPPQVAETTGKFEDREDHVPKLEQIN 158
Query: 128 STAATSSPN 136
ST SS N
Sbjct: 159 STRILSSQN 167
>gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo
sapiens]
Length = 261
Score = 43.1 bits (100), Expect = 8e-05
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 71 KSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGG 108
+ LA+ PRLE +G ISA C L L SSDSP S S+V G
Sbjct: 6 EGLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAG 43
>gi|58294160 breast carcinoma amplified sequence 4 isoform a [Homo
sapiens]
Length = 211
Score = 43.1 bits (100), Expect = 8e-05
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 41 VDKIGQFQKIVGGLIELVDQLAKEAENEK------------MKSLAVSPRLECTGAISAH 88
VD++ F K+VG + ++ +AE + L +EC+G I A
Sbjct: 114 VDRLEAFVKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRNVECSGTIPAR 173
Query: 89 CKLCLSDSSDSPTSPSRVGGTTGHRCS 115
C L L SSDSP S S+V G T C+
Sbjct: 174 CNLRLPGSSDSPASASQVAGITEVTCT 200
>gi|34147403 intraflagellar transport 81-like isoform 2 [Homo
sapiens]
Length = 431
Score = 42.7 bits (99), Expect = 1e-04
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 66 ENEKMKSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPS 104
+ ++ + L +SPRLEC G I A+C L L SSD PTS S
Sbjct: 393 KGDERQDLTLSPRLECGGVIMAYCSLKLLGSSDPPTSAS 431
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 42.4 bits (98), Expect = 1e-04
Identities = 19/23 (82%), Positives = 20/23 (86%)
Query: 76 SPRLECTGAISAHCKLCLSDSSD 98
SPRLEC+GAISAHC L L DSSD
Sbjct: 6 SPRLECSGAISAHCSLHLPDSSD 28
>gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens]
Length = 183
Score = 42.4 bits (98), Expect = 1e-04
Identities = 22/35 (62%), Positives = 25/35 (71%)
Query: 72 SLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRV 106
SL +SPRLE +G ISAHC L L SSDS S SR+
Sbjct: 25 SLVLSPRLEPSGVISAHCNLHLLASSDSSASASRL 59
>gi|239755619 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 42.0 bits (97), Expect = 2e-04
Identities = 22/38 (57%), Positives = 25/38 (65%)
Query: 71 KSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGG 108
+ LA PRLE +G ISA C L L SSDSP S S+V G
Sbjct: 6 EGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAG 43
>gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo
sapiens]
Length = 261
Score = 42.0 bits (97), Expect = 2e-04
Identities = 22/38 (57%), Positives = 25/38 (65%)
Query: 71 KSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGG 108
+ LA PRLE +G ISA C L L SSDSP S S+V G
Sbjct: 6 EGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAG 43
>gi|40807368 potassium channel regulator isoform 2 [Homo sapiens]
Length = 229
Score = 42.0 bits (97), Expect = 2e-04
Identities = 22/34 (64%), Positives = 22/34 (64%)
Query: 78 RLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTG 111
RL C G ISAH L L SSDSP S SRV G TG
Sbjct: 193 RLVCNGVISAHHNLRLWGSSDSPASASRVAGITG 226
>gi|154146187 TFIIS central domain-containing protein 1 [Homo
sapiens]
Length = 381
Score = 42.0 bits (97), Expect = 2e-04
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 85 ISAHCKLCLSDSSDSPTSPSRVGGTTGHRCSELAQIYSKA 124
ISAH KLCL SS+SP S RV GTT + S+ QI ++A
Sbjct: 2 ISAHRKLCLPGSSNSPASAFRVAGTTAVKMSDKNQIAARA 41
>gi|237858664 hypothetical protein LOC123207 isoform b [Homo
sapiens]
Length = 167
Score = 41.6 bits (96), Expect = 2e-04
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 71 KSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPS 104
++LA+SP+LEC+G + AHC L L SS SP S S
Sbjct: 134 QNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
>gi|24497440 interleukin 12 receptor, beta 1 isoform 2 precursor
[Homo sapiens]
Length = 381
Score = 41.6 bits (96), Expect = 2e-04
Identities = 20/29 (68%), Positives = 20/29 (68%)
Query: 83 GAISAHCKLCLSDSSDSPTSPSRVGGTTG 111
G ISAHC L L DS DSP S SRV G TG
Sbjct: 342 GMISAHCNLRLPDSRDSPASASRVAGITG 370
>gi|187608508 centromere protein L isoform 1 [Homo sapiens]
Length = 390
Score = 41.2 bits (95), Expect = 3e-04
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 63 KEAENEKMKSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTG 111
++ E ++ L +SPRLE +G I C LCL SSD T +V GT G
Sbjct: 132 RDPEAFLVQGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAG 180
>gi|122939204 parkin co-regulated gene protein isoform 1 [Homo
sapiens]
Length = 296
Score = 38.9 bits (89), Expect = 0.002
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 77 PRLECTGAISAHCKLCLSDSSDSPTSPSRV 106
PRLEC+GAI A C L SSD PTS S+V
Sbjct: 210 PRLECSGAIMARCNLDHLGSSDPPTSASQV 239
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.127 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,255,805
Number of Sequences: 37866
Number of extensions: 215196
Number of successful extensions: 887
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 106
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.