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Search of human proteins with 27735115
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27735115 hypothetical protein LOC285051 [Homo sapiens]
(177 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27735115 hypothetical protein LOC285051 [Homo sapiens] 362 e-100
gi|65287717 eukaryotic translation initiation factor 2 alpha kin... 32 0.38
gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens] 30 0.84
gi|23346418 MYC induced nuclear antigen isoform b [Homo sapiens] 30 1.1
gi|110227621 MYC induced nuclear antigen isoform a [Homo sapiens] 30 1.1
gi|110227619 MYC induced nuclear antigen isoform a [Homo sapiens] 30 1.1
gi|7019561 thyrotropin-releasing hormone degrading enzyme [Homo ... 30 1.1
gi|113204627 metallophosphoesterase domain containing 1 [Homo sa... 30 1.4
gi|13236579 solute carrier family 27 member 3 [Homo sapiens] 30 1.4
gi|71061468 centromere protein E [Homo sapiens] 29 2.4
gi|55770834 centromere protein F [Homo sapiens] 29 2.4
gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens] 28 3.2
gi|226823235 regenerating islet-derived family, member 4 isoform... 28 5.4
gi|62988361 absent in melanoma 1 [Homo sapiens] 28 5.4
gi|244790020 synaptotagmin-like 2 isoform i [Homo sapiens] 27 7.1
gi|126116596 asp (abnormal spindle)-like, microcephaly associate... 27 7.1
gi|53759151 stearoyl-CoA desaturase 1 [Homo sapiens] 27 7.1
gi|221136985 SLIT and NTRK-like family, member 2 [Homo sapiens] 27 9.3
gi|221136981 SLIT and NTRK-like family, member 2 [Homo sapiens] 27 9.3
gi|221136977 SLIT and NTRK-like family, member 2 [Homo sapiens] 27 9.3
gi|221136973 SLIT and NTRK-like family, member 2 [Homo sapiens] 27 9.3
gi|221136969 SLIT and NTRK-like family, member 2 [Homo sapiens] 27 9.3
gi|221136965 SLIT and NTRK-like family, member 2 [Homo sapiens] 27 9.3
gi|221136961 SLIT and NTRK-like family, member 2 [Homo sapiens] 27 9.3
gi|221136957 SLIT and NTRK-like family, member 2 [Homo sapiens] 27 9.3
gi|33504581 SLIT and NTRK-like family, member 2 [Homo sapiens] 27 9.3
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 27 9.3
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 27 9.3
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens] 27 9.3
gi|75750529 ankyrin repeat and MYND domain containing 1 isoform ... 27 9.3
>gi|27735115 hypothetical protein LOC285051 [Homo sapiens]
Length = 177
Score = 362 bits (928), Expect = e-100
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MDQPAVATASTSIREDLVGGESFITASKPAQKTSSFEREGWWRIALTDTPIPGTYHLKTF 60
MDQPAVATASTSIREDLVGGESFITASKPAQKTSSFEREGWWRIALTDTPIPGTYHLKTF
Sbjct: 1 MDQPAVATASTSIREDLVGGESFITASKPAQKTSSFEREGWWRIALTDTPIPGTYHLKTF 60
Query: 61 IEESLLNPVIATYNFKNEGRKKPPLVQRNNPVLNDLPQYMPPDFLDLLKKQVATYSFKDK 120
IEESLLNPVIATYNFKNEGRKKPPLVQRNNPVLNDLPQYMPPDFLDLLKKQVATYSFKDK
Sbjct: 61 IEESLLNPVIATYNFKNEGRKKPPLVQRNNPVLNDLPQYMPPDFLDLLKKQVATYSFKDK 120
Query: 121 PRPSPSTLVDKDQSLQLSPGQYNVLPAPVPKYASRSCVFRSTVQRFPTTYFIPVSIM 177
PRPSPSTLVDKDQSLQLSPGQYNVLPAPVPKYASRSCVFRSTVQRFPTTYFIPVSIM
Sbjct: 121 PRPSPSTLVDKDQSLQLSPGQYNVLPAPVPKYASRSCVFRSTVQRFPTTYFIPVSIM 177
>gi|65287717 eukaryotic translation initiation factor 2 alpha kinase
4 [Homo sapiens]
Length = 1649
Score = 31.6 bits (70), Expect = 0.38
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 96 LPQYMPPDFLDLLKKQVATYSFKDKPRPSPSTLVDK------------DQSLQLSPGQYN 143
+P +P DF D LKK V DK R SP L+ +QS + S GQ +
Sbjct: 504 IPSDLPADFQDFLKKCVC---LDDKERWSPQQLLKHSFINPQPKMPLVEQSPEDSEGQ-D 559
Query: 144 VLPAPVPKYASRSCVFRSTVQRFPTTYFI 172
+ +P S F S QR + YFI
Sbjct: 560 YVETVIPSNRLPSAAFFSETQRQFSRYFI 588
>gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens]
Length = 739
Score = 30.4 bits (67), Expect = 0.84
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 2 DQPAVATASTSIREDLVGGESFITASKPAQKTS-SFEREGWWRIALTDTPI-PGTYHLKT 59
+QP + T+ + + GE F+ K A + E + A P P + ++
Sbjct: 77 EQPPLPTSESPFAWSPLAGEKFVEVYKEAHLLALHIESSSRNQAAQAAKPEDPRSQGVER 136
Query: 60 FIEESLLNPVIATYNFKNEGRKKPPLVQRNNPVLNDLPQYMPP 102
FI+ES L I + + E +K P ++R L+D P PP
Sbjct: 137 FIQESKLK--INLFEKEKEMKKSPTSLKRETYYLSDSPLLGPP 177
>gi|23346418 MYC induced nuclear antigen isoform b [Homo sapiens]
Length = 464
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 28 KPAQKTSSFEREG-----WWRIALTDTPIPGTYHLKTFIEESLLNPVIATYNFKNEGRKK 82
K A+ T S + EG ++ P + + + ESL++P+ FK +K
Sbjct: 3 KKAKPTGSGKEEGPAPCKQMKLEAAGGPSALNFDSPSSLFESLISPIKTETFFKEFWEQK 62
Query: 83 PPLVQRNNPVL 93
P L+QR++P L
Sbjct: 63 PLLIQRDDPAL 73
>gi|110227621 MYC induced nuclear antigen isoform a [Homo sapiens]
Length = 465
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 28 KPAQKTSSFEREG-----WWRIALTDTPIPGTYHLKTFIEESLLNPVIATYNFKNEGRKK 82
K A+ T S + EG ++ P + + + ESL++P+ FK +K
Sbjct: 3 KKAKPTGSGKEEGPAPCKQMKLEAAGGPSALNFDSPSSLFESLISPIKTETFFKEFWEQK 62
Query: 83 PPLVQRNNPVL 93
P L+QR++P L
Sbjct: 63 PLLIQRDDPAL 73
>gi|110227619 MYC induced nuclear antigen isoform a [Homo sapiens]
Length = 465
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 28 KPAQKTSSFEREG-----WWRIALTDTPIPGTYHLKTFIEESLLNPVIATYNFKNEGRKK 82
K A+ T S + EG ++ P + + + ESL++P+ FK +K
Sbjct: 3 KKAKPTGSGKEEGPAPCKQMKLEAAGGPSALNFDSPSSLFESLISPIKTETFFKEFWEQK 62
Query: 83 PPLVQRNNPVL 93
P L+QR++P L
Sbjct: 63 PLLIQRDDPAL 73
>gi|7019561 thyrotropin-releasing hormone degrading enzyme [Homo
sapiens]
Length = 1024
Score = 30.0 bits (66), Expect = 1.1
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 2 DQPAV-ATASTSIREDLVGGESFITASKPAQKTSSFEREGWWRIALTDTPIPGTYHL 57
D+P AT SI+ ++++ S +TS FE +GW + TP+ TY+L
Sbjct: 280 DEPIYKATFKISIKHQA----TYLSLSNMPVETSVFEEDGWVTDHFSQTPLMSTYYL 332
>gi|113204627 metallophosphoesterase domain containing 1 [Homo
sapiens]
Length = 326
Score = 29.6 bits (65), Expect = 1.4
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 61 IEESLLNPVIA-TYNFKNEGRKKPPLVQRNNPVLNDLPQYMPPDF 104
++E NP A T+ N+GR +PP VQ +PV +D P+ PP +
Sbjct: 47 VDEYSSNPTQAFTFYNINQGRFQPPHVQMVDPVPHDAPK--PPGY 89
>gi|13236579 solute carrier family 27 member 3 [Homo sapiens]
Length = 730
Score = 29.6 bits (65), Expect = 1.4
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 82 KPP----LVQRNNPVLNDLPQYMPPDFLDLLKKQVATYSFK-DKPRPS-----PSTLVDK 131
+PP L+Q V +LP Y P FL L + T +FK K R + PSTL D
Sbjct: 642 RPPHALDLMQLYTHVSENLPPYARPRFLRLQESLATTETFKQQKVRMANEGFDPSTLSDP 701
Query: 132 DQSLQLSPGQYNVLPAPVPKYAS 154
L + G Y LP +Y++
Sbjct: 702 LYVLDQAVGAY--LPLTTARYSA 722
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 28.9 bits (63), Expect = 2.4
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 80 RKKPPLVQRNNPVLNDLPQYMPPDFLDLLKKQVATYSFKDKPRPSPSTLVDKDQSLQLSP 139
++K L+ N + N++ + KQV ++ P+ SP + Q++P
Sbjct: 2568 KQKNELLSNNQHLSNEVKTWKERTLKREAHKQVTC---ENSPK-SPKVTGTASKKKQITP 2623
Query: 140 GQYNV--LPAPVPKYASRSCVFRSTVQRFPTTY 170
Q L PVPK + +SC F S + P+ +
Sbjct: 2624 SQCKERNLQDPVPKESPKSCFFDSRSKSLPSPH 2656
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 28.9 bits (63), Expect = 2.4
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 96 LPQYMPPDFLDLLKKQVATYSFKDKP---RPSPSTLVDKDQSLQLSPGQYNVLPAPVP-- 150
LP+ + F D+ + + Y + R SP K LS G+ N+ + P
Sbjct: 2981 LPEVVKKGFADIPTGKTSPYILRRTTMATRTSPRLAAQKLALSPLSLGKENLAESSKPTA 3040
Query: 151 --------KYASRSCVFRSTVQRFPTTYFIPVS 175
K A RS V T+ R PTT +PV+
Sbjct: 3041 GGSRSQKVKVAQRSPVDSGTILREPTTKSVPVN 3073
>gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]
Length = 2526
Score = 28.5 bits (62), Expect = 3.2
Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 19/174 (10%)
Query: 11 TSIREDLVGGESFITASKPAQKTSSF---EREGWWRIALTDTPIPGTYHLKTFIEESLLN 67
T ++ED +GG FI + + S F E G + + + L E+ +
Sbjct: 2196 TELQEDFLGGNGFIGQELNSGRESPFVKTEDNGSDYLVYLPSQMFEPQKLMINYEKDQKS 2255
Query: 68 PVIA--TYNFKNEGRKKPPLVQRNNPVLNDLPQYMPPDFLDLLKKQVATYSFKD------ 119
IA T +N GRK+ P ++ YM FL ++V + FK+
Sbjct: 2256 AEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRVGSDEFKEVKAFIT 2315
Query: 120 --------KPRPSPSTLVDKDQSLQLSPGQYNVLPAPVPKYASRSCVFRSTVQR 165
P P STL D+ L SP Y P Y V +++ +
Sbjct: 2316 SVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLVTYNSIHQ 2369
>gi|226823235 regenerating islet-derived family, member 4 isoform 2
[Homo sapiens]
Length = 134
Score = 27.7 bits (60), Expect = 5.4
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 118 KDKPRPSPSTLVDKDQSLQLSPGQYNVLPAPVPKYASRSCVFRS 161
KD+P P + D + PG Y P + K+ CVF S
Sbjct: 70 KDQPEPQ----ISFDSGSSVLPGHYEEKPLWLVKWREEGCVFNS 109
>gi|62988361 absent in melanoma 1 [Homo sapiens]
Length = 1723
Score = 27.7 bits (60), Expect = 5.4
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 81 KKPPLVQRNNPVLNDLPQYMPPDFLDLLKKQVATYSFKDKP---RPSPS-TLVDKDQSLQ 136
K L+++ + D + + D + T KD P P P T D +
Sbjct: 400 KDHKLLEKEDSEAADSKSLVLENVTDTAQDIPTTVDTKDLPPTAMPKPQHTFSDSQSPAE 459
Query: 137 LSPGQYNVLPAPVPKYASRSCVFRSTVQRFPTT 169
SPG L AP P + +S + FP T
Sbjct: 460 SSPGPSLSLSAPAPGDVPKDTCVQSPISSFPCT 492
>gi|244790020 synaptotagmin-like 2 isoform i [Homo sapiens]
Length = 935
Score = 27.3 bits (59), Expect = 7.1
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 20/117 (17%)
Query: 64 SLLNPVIATYNFKNEGRKKP---PLVQRNNPVLND-LPQ-YMPPDFLDLLKKQVATYSF- 117
S++NP + + E +KP P QR NP + LP+ + + K T F
Sbjct: 132 SVVNPASSVIDMSQENTRKPNVSPEKQRKNPFNSSKLPEGHSSQQTKNEQSKNGRTGLFQ 191
Query: 118 ----------KDKPRPSPSTLVDKDQSLQLSPGQYN--VLPAPVPKYASRSCVFRST 162
K+K + +++ ++S Q PG N + AP+PK +R +++ST
Sbjct: 192 TSKEDELSESKEKSTVADTSIQKLEKSKQTLPGLSNGSQIKAPIPK--ARKMIYKST 246
>gi|126116596 asp (abnormal spindle)-like, microcephaly associated
[Homo sapiens]
Length = 3477
Score = 27.3 bits (59), Expect = 7.1
Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 27 SKPAQKTSSFEREGWWRIALTDTPIPGTYHLKTFIEESLLNPVIATYNFKNEGRKKPPLV 86
S+P S+ E + +I D+ I Y L +E +NP+++ F +
Sbjct: 348 SQPVHLESTIAHEIYQKILSPDSFIKDNYGLNQDLESESVNPILSPNQFLKDNMAYMCTS 407
Query: 87 QRNNPV-LNDLPQYMPPDFLDLLKKQVATYSFKDKPRPSPSTLVDKDQSLQLSPGQYNVL 145
Q+ V L++ +P D K +V+ + + SP + ++ +++ Y+ +
Sbjct: 408 QQTCKVPLSNENSQVPQSPEDWRKSEVSPRIPECQGSKSPKAIF--EELVEMKSNYYSFI 465
Query: 146 PAPVPKYAS 154
PK+++
Sbjct: 466 KQNNPKFSA 474
>gi|53759151 stearoyl-CoA desaturase 1 [Homo sapiens]
Length = 359
Score = 27.3 bits (59), Expect = 7.1
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 83 PP--LVQRNNPVLNDLPQYMPPDFLDLLKKQVATYSFKDKPRPSP 125
PP ++Q L +P Y+ D +K + ++KDK PSP
Sbjct: 23 PPSRVLQNGGDKLETMPLYLEDDIRPDIKDDIYDPTYKDKEGPSP 67
>gi|221136985 SLIT and NTRK-like family, member 2 [Homo sapiens]
Length = 845
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
Query: 79 GRKKPPLVQRNNPVLNDLPQYMPPDFLDLLKKQVA 113
G+ KP N+P+L PQ PD+L++L+KQ A
Sbjct: 813 GQSKP-----NHPLLQAKPQ-SEPDYLEVLEKQTA 841
>gi|221136981 SLIT and NTRK-like family, member 2 [Homo sapiens]
Length = 845
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
Query: 79 GRKKPPLVQRNNPVLNDLPQYMPPDFLDLLKKQVA 113
G+ KP N+P+L PQ PD+L++L+KQ A
Sbjct: 813 GQSKP-----NHPLLQAKPQ-SEPDYLEVLEKQTA 841
>gi|221136977 SLIT and NTRK-like family, member 2 [Homo sapiens]
Length = 845
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
Query: 79 GRKKPPLVQRNNPVLNDLPQYMPPDFLDLLKKQVA 113
G+ KP N+P+L PQ PD+L++L+KQ A
Sbjct: 813 GQSKP-----NHPLLQAKPQ-SEPDYLEVLEKQTA 841
>gi|221136973 SLIT and NTRK-like family, member 2 [Homo sapiens]
Length = 845
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
Query: 79 GRKKPPLVQRNNPVLNDLPQYMPPDFLDLLKKQVA 113
G+ KP N+P+L PQ PD+L++L+KQ A
Sbjct: 813 GQSKP-----NHPLLQAKPQ-SEPDYLEVLEKQTA 841
>gi|221136969 SLIT and NTRK-like family, member 2 [Homo sapiens]
Length = 845
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
Query: 79 GRKKPPLVQRNNPVLNDLPQYMPPDFLDLLKKQVA 113
G+ KP N+P+L PQ PD+L++L+KQ A
Sbjct: 813 GQSKP-----NHPLLQAKPQ-SEPDYLEVLEKQTA 841
>gi|221136965 SLIT and NTRK-like family, member 2 [Homo sapiens]
Length = 845
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
Query: 79 GRKKPPLVQRNNPVLNDLPQYMPPDFLDLLKKQVA 113
G+ KP N+P+L PQ PD+L++L+KQ A
Sbjct: 813 GQSKP-----NHPLLQAKPQ-SEPDYLEVLEKQTA 841
>gi|221136961 SLIT and NTRK-like family, member 2 [Homo sapiens]
Length = 845
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
Query: 79 GRKKPPLVQRNNPVLNDLPQYMPPDFLDLLKKQVA 113
G+ KP N+P+L PQ PD+L++L+KQ A
Sbjct: 813 GQSKP-----NHPLLQAKPQ-SEPDYLEVLEKQTA 841
>gi|221136957 SLIT and NTRK-like family, member 2 [Homo sapiens]
Length = 845
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
Query: 79 GRKKPPLVQRNNPVLNDLPQYMPPDFLDLLKKQVA 113
G+ KP N+P+L PQ PD+L++L+KQ A
Sbjct: 813 GQSKP-----NHPLLQAKPQ-SEPDYLEVLEKQTA 841
>gi|33504581 SLIT and NTRK-like family, member 2 [Homo sapiens]
Length = 845
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
Query: 79 GRKKPPLVQRNNPVLNDLPQYMPPDFLDLLKKQVA 113
G+ KP N+P+L PQ PD+L++L+KQ A
Sbjct: 813 GQSKP-----NHPLLQAKPQ-SEPDYLEVLEKQTA 841
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 119 DKPRPSPSTLVDKDQSLQLSPGQYNVLPAPVPKYASRSCVFRSTVQRFPTT 169
D P P+ + +Q LS GQ+ +LP P+ A+ S S+ + P +
Sbjct: 206 DPPSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPAS 256
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 119 DKPRPSPSTLVDKDQSLQLSPGQYNVLPAPVPKYASRSCVFRSTVQRFPTT 169
D P P+ + +Q LS GQ+ +LP P+ A+ S S+ + P +
Sbjct: 206 DPPSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPAS 256
>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 119 DKPRPSPSTLVDKDQSLQLSPGQYNVLPAPVPKYASRSCVFRSTVQRFPTT 169
D P P+ + +Q LS GQ+ +LP P+ A+ S S+ + P +
Sbjct: 206 DPPSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPAS 256
>gi|75750529 ankyrin repeat and MYND domain containing 1 isoform 1
[Homo sapiens]
Length = 941
Score = 26.9 bits (58), Expect = 9.3
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 32/121 (26%)
Query: 22 SFITASKPAQKTSSFEREGWWRIALTDTPIPGTYHLKTFI--EESLLNPVIATYNFKNEG 79
SFIT S PA+ + S E + W L + P Y K F+ + L P + Y+ ++
Sbjct: 123 SFITHS-PARISLSEEEKTEW--GLQEGQDPFFYDYKRFLLNDNLTLPPEMYVYSTNSDH 179
Query: 80 -------RKK----------PPLVQRNNP--VLNDLPQYMPPDFLDLLKKQVATYSFKDK 120
RK+ PP V+ P ++N+ P L+K Q TY F++K
Sbjct: 180 LPMTSSFRKELDARIFLNEIPPFVEDGEPWFIINETPL--------LVKIQKQTYKFRNK 231
Query: 121 P 121
P
Sbjct: 232 P 232
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,837,934
Number of Sequences: 37866
Number of extensions: 402103
Number of successful extensions: 887
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 32
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.