Guide to the Human Genome
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Name: C18orf26 Sequence: fasta or formatted (210aa) NCBI GI: 27734983
Description:

hypothetical protein LOC284254

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         15           2
 C cysteine            5.7         12           1
 D aspartate           4.3          9           1
 E glutamate           5.2         11           1
 F phenylalanine       0.5          1           1
 G glycine             4.3          9           1
 H histidine           2.9          6           1
 I isoleucine          6.7         14           2
 K lysine              3.8          8           1
 L leucine             5.7         12           2
 M methionine          2.4          5           1
 N asparagine          6.2         13           2
 P proline             6.7         14           2
 Q glutamine           2.9          6           1
 R arginine            2.4          5           1
 S serine             11.0         23           2
 T threonine          11.9         25           3
 V valine              7.1         15           1
 W tryptophan          1.9          4           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC284254 
TNFRSF10C             0.046   tumor necrosis factor receptor superfamily, member 1...
LOC730474             0.036   PREDICTED: hypothetical protein, partial 
HUWE1                 0.036   HECT, UBA and WWE domain containing 1 
LOC100131514          0.034   PREDICTED: similar to hCG1747327, partial 
LOC100294420          0.034   PREDICTED: similar to mucin 2 
MUC2                  0.034   mucin 2 precursor 
LOC100131251          0.029   PREDICTED: hypothetical protein 
LOC730474             0.029   PREDICTED: hypothetical protein 
LOC100131251          0.029   PREDICTED: hypothetical protein 
NFASC                 0.029   neurofascin isoform 1 precursor 
MUC17                 0.029   mucin 17 
TCERG1                0.027   transcription elongation regulator 1 isoform 2 [Homo...
TCERG1                0.027   transcription elongation regulator 1 isoform 1 [Homo...
POGZ                  0.024   pogo transposable element with ZNF domain isoform 3 ...
POGZ                  0.024   pogo transposable element with ZNF domain isoform 1 ...
POGZ                  0.024   pogo transposable element with ZNF domain isoform 2 ...
MUC3A                 0.024   PREDICTED: mucin 3A, intestinal 
LOC732156             0.024   PREDICTED: similar to Mucin-3A 
LOC100293983          0.024   PREDICTED: similar to mucin, partial 
LOC729792             0.024   PREDICTED: hypothetical protein 
LOC729792             0.024   PREDICTED: hypothetical protein 
LOC729792             0.024   PREDICTED: hypothetical protein 
LOC100294501          0.024   PREDICTED: hypothetical protein 
LOC100294249          0.024   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.024   PREDICTED: hypothetical protein 
LOC100294204          0.024   PREDICTED: hypothetical protein 
LOC100294136          0.024   PREDICTED: hypothetical protein 
LOC100294091          0.024   PREDICTED: hypothetical protein 
LOC730401             0.024   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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