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Search of human proteins with 27501458
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27501458 CTF18, chromosome transmission fidelity factor 18
homolog [Homo sapiens]
(975 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27501458 CTF18, chromosome transmission fidelity factor 18 ho... 1939 0.0
gi|32528306 replication factor C large subunit [Homo sapiens] 98 3e-20
gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens] 58 4e-08
gi|194306571 replication factor C 5 isoform 2 [Homo sapiens] 51 5e-06
gi|194306567 replication factor C 5 isoform 2 [Homo sapiens] 51 5e-06
gi|6677723 replication factor C 5 isoform 1 [Homo sapiens] 51 5e-06
gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens] 49 3e-05
gi|31881687 replication factor C 4 [Homo sapiens] 45 3e-04
gi|4506491 replication factor C 4 [Homo sapiens] 45 3e-04
gi|31563534 replication factor C 2 isoform 1 [Homo sapiens] 44 0.001
gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens] 43 0.002
gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens] 43 0.002
gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens] 41 0.005
gi|33457350 OTU domain containing 5 isoform a [Homo sapiens] 41 0.005
gi|209977021 OTU domain containing 5 isoform b [Homo sapiens] 41 0.005
gi|209977019 OTU domain containing 5 isoform b [Homo sapiens] 41 0.005
gi|206597502 NESH protein isoform 2 [Homo sapiens] 41 0.005
gi|7705981 NESH protein isoform 1 [Homo sapiens] 41 0.005
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 39 0.018
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 39 0.031
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 39 0.031
gi|217416343 fibrosin-like 1 [Homo sapiens] 38 0.040
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 38 0.040
gi|4505725 peroxin1 [Homo sapiens] 38 0.053
gi|163965366 nascent polypeptide-associated complex alpha subuni... 38 0.053
gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo ... 37 0.069
gi|18426904 Werner helicase interacting protein isoform 2 [Homo ... 37 0.069
gi|18426902 Werner helicase interacting protein isoform 1 [Homo ... 37 0.069
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 37 0.090
gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens] 37 0.090
>gi|27501458 CTF18, chromosome transmission fidelity factor 18
homolog [Homo sapiens]
Length = 975
Score = 1939 bits (5023), Expect = 0.0
Identities = 975/975 (100%), Positives = 975/975 (100%)
Query: 1 MEDYEQELCGVEDDFHNQFAAELEVLAELEGASTPSPSGVPLFTAGRPPRTFEEALARGD 60
MEDYEQELCGVEDDFHNQFAAELEVLAELEGASTPSPSGVPLFTAGRPPRTFEEALARGD
Sbjct: 1 MEDYEQELCGVEDDFHNQFAAELEVLAELEGASTPSPSGVPLFTAGRPPRTFEEALARGD 60
Query: 61 AASSPAPAASVGSSQGGARKRQVDADLQPAGSLPHAPRIKRPRLQVVKRLNFRSEEMEEP 120
AASSPAPAASVGSSQGGARKRQVDADLQPAGSLPHAPRIKRPRLQVVKRLNFRSEEMEEP
Sbjct: 61 AASSPAPAASVGSSQGGARKRQVDADLQPAGSLPHAPRIKRPRLQVVKRLNFRSEEMEEP 120
Query: 121 PPPDSSPTDITPPPSPEDLAELWGHGVSEAAADVGLTRASPAARNPVLRRPPILEDYVHV 180
PPPDSSPTDITPPPSPEDLAELWGHGVSEAAADVGLTRASPAARNPVLRRPPILEDYVHV
Sbjct: 121 PPPDSSPTDITPPPSPEDLAELWGHGVSEAAADVGLTRASPAARNPVLRRPPILEDYVHV 180
Query: 181 TSTEGVRAYLVLRADPMAPGVQGSLLHVPWRGGGQLDLLGVSLASLKKQVDGERRERLLQ 240
TSTEGVRAYLVLRADPMAPGVQGSLLHVPWRGGGQLDLLGVSLASLKKQVDGERRERLLQ
Sbjct: 181 TSTEGVRAYLVLRADPMAPGVQGSLLHVPWRGGGQLDLLGVSLASLKKQVDGERRERLLQ 240
Query: 241 EAQKLSDTLHSLRSGEEEAAQPLGAPEEEPTDGQDASSHCLWVDEFAPRHYTELLSDDFT 300
EAQKLSDTLHSLRSGEEEAAQPLGAPEEEPTDGQDASSHCLWVDEFAPRHYTELLSDDFT
Sbjct: 241 EAQKLSDTLHSLRSGEEEAAQPLGAPEEEPTDGQDASSHCLWVDEFAPRHYTELLSDDFT 300
Query: 301 NRCLLKWLKLWDLVVFGHERPSRKPRPSVEPARVSKEATAPGKWKSHEQVLEEMLEAGLD 360
NRCLLKWLKLWDLVVFGHERPSRKPRPSVEPARVSKEATAPGKWKSHEQVLEEMLEAGLD
Sbjct: 301 NRCLLKWLKLWDLVVFGHERPSRKPRPSVEPARVSKEATAPGKWKSHEQVLEEMLEAGLD 360
Query: 361 PSQRPKQKVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQME 420
PSQRPKQKVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQME
Sbjct: 361 PSQRPKQKVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQME 420
Query: 421 SVLGAGGKPNCLVIDEIDGAPVAAINVLLSILNRKGPQEVGPQGPAVPSGGGRRRRAEGG 480
SVLGAGGKPNCLVIDEIDGAPVAAINVLLSILNRKGPQEVGPQGPAVPSGGGRRRRAEGG
Sbjct: 421 SVLGAGGKPNCLVIDEIDGAPVAAINVLLSILNRKGPQEVGPQGPAVPSGGGRRRRAEGG 480
Query: 481 LLMRPIICICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAA 540
LLMRPIICICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAA
Sbjct: 481 LLMRPIICICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAA 540
Query: 541 LCEKTDNDIRACINTLQFLYSRGQRELSVRDVQATRVGLKDQRRGLFSVWQEVFQLPRAQ 600
LCEKTDNDIRACINTLQFLYSRGQRELSVRDVQATRVGLKDQRRGLFSVWQEVFQLPRAQ
Sbjct: 541 LCEKTDNDIRACINTLQFLYSRGQRELSVRDVQATRVGLKDQRRGLFSVWQEVFQLPRAQ 600
Query: 601 RRRVGQDPALPADTLLLGDGDAGSLTSASQRFYRVLHAAASAGEHEKVVQGLFDNFLRLR 660
RRRVGQDPALPADTLLLGDGDAGSLTSASQRFYRVLHAAASAGEHEKVVQGLFDNFLRLR
Sbjct: 601 RRRVGQDPALPADTLLLGDGDAGSLTSASQRFYRVLHAAASAGEHEKVVQGLFDNFLRLR 660
Query: 661 LRDSSLGAVCVALDWLAFDDLLAGAAHHSQSFQLLRYPPFLPVAFHVLFASSHTPRITFP 720
LRDSSLGAVCVALDWLAFDDLLAGAAHHSQSFQLLRYPPFLPVAFHVLFASSHTPRITFP
Sbjct: 661 LRDSSLGAVCVALDWLAFDDLLAGAAHHSQSFQLLRYPPFLPVAFHVLFASSHTPRITFP 720
Query: 721 SSQQEAQNRMSQMRNLIQTLVSGIAPATRSRATPQALLLDALCLLLDILAPKLRPVSTQL 780
SSQQEAQNRMSQMRNLIQTLVSGIAPATRSRATPQALLLDALCLLLDILAPKLRPVSTQL
Sbjct: 721 SSQQEAQNRMSQMRNLIQTLVSGIAPATRSRATPQALLLDALCLLLDILAPKLRPVSTQL 780
Query: 781 YSTREKQQLASLVGTMLAYSLTYRQERTPDGQYIYRLEPNVEELCRFPELPARKPLTYQT 840
YSTREKQQLASLVGTMLAYSLTYRQERTPDGQYIYRLEPNVEELCRFPELPARKPLTYQT
Sbjct: 781 YSTREKQQLASLVGTMLAYSLTYRQERTPDGQYIYRLEPNVEELCRFPELPARKPLTYQT 840
Query: 841 KQLIAREIEVEKMRRAEASARVENSPQVDGSPPGLEGLLGGIGEKGVHRPAPRNHEQRLE 900
KQLIAREIEVEKMRRAEASARVENSPQVDGSPPGLEGLLGGIGEKGVHRPAPRNHEQRLE
Sbjct: 841 KQLIAREIEVEKMRRAEASARVENSPQVDGSPPGLEGLLGGIGEKGVHRPAPRNHEQRLE 900
Query: 901 HIMRRAAREEQPEKDFFGRVVVRSTAVPSAGDTAPEQDSVERRMGTAVGRSEVWFRFNEG 960
HIMRRAAREEQPEKDFFGRVVVRSTAVPSAGDTAPEQDSVERRMGTAVGRSEVWFRFNEG
Sbjct: 901 HIMRRAAREEQPEKDFFGRVVVRSTAVPSAGDTAPEQDSVERRMGTAVGRSEVWFRFNEG 960
Query: 961 VSNAVRRSLYIRDLL 975
VSNAVRRSLYIRDLL
Sbjct: 961 VSNAVRRSLYIRDLL 975
>gi|32528306 replication factor C large subunit [Homo sapiens]
Length = 1147
Score = 98.2 bits (243), Expect = 3e-20
Identities = 90/386 (23%), Positives = 152/386 (39%), Gaps = 75/386 (19%)
Query: 227 KKQVDGERRERLLQEAQKLSDTLHSLRSGEEEAAQPLGAPEEEPTDGQDASSH----CLW 282
KK +R+ L + +K +D +E+ A+ + D+S + LW
Sbjct: 527 KKSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLW 586
Query: 283 VDEFAPRHYTELLSDDFTNRC---LLKWLKLWDLVVFGHERPSRKPRPSVEPARVSKEAT 339
VD++ P ++ C LL+WL+ W + S E + +K
Sbjct: 587 VDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQ-------------KSSSEDKKHAKFGK 633
Query: 340 APGKWKSHEQVLEEMLEAGLDPSQRPKQKVALLCGPPGLGKTTLAHVIARHAGYSVVEMN 399
GK K ALL GPPG+GKTT A ++ + GYS VE+N
Sbjct: 634 FSGK------------------DDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELN 675
Query: 400 ASDDRSPEVFRTRIEAATQMESVLG--------AGGKPNCLVIDEIDGAPVAAINVLLSI 451
ASD RS + + + S+ G + + L++DE+DG +
Sbjct: 676 ASDTRSKSSLKAIVAESLNNTSIKGFYSNGAASSVSTKHALIMDEVDG--------MAGN 727
Query: 452 LNRKGPQEVGPQGPAVPSGGGRRRRAEGGLLMR---PIICICNDQFAPSLRQLKQQAFLL 508
+R G QE+ GL+ PIIC+CND+ P +R L F L
Sbjct: 728 EDRGGIQEL------------------IGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDL 769
Query: 509 HFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEKTDNDIRACINTLQFLYSRGQRELS 568
F ++ + ++ ++G++ P + + + DIR ++ L +R +
Sbjct: 770 RFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTY 829
Query: 569 VRDVQATRVGLKDQRRGLFSVWQEVF 594
+ + KD + G F V ++VF
Sbjct: 830 DQAKADSHRAKKDIKMGPFDVARKVF 855
>gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]
Length = 1844
Score = 58.2 bits (139), Expect = 4e-08
Identities = 54/251 (21%), Positives = 102/251 (40%), Gaps = 21/251 (8%)
Query: 227 KKQVDGERRERLLQEAQKLSDTLHSLRSGEEEAAQPLGAPEEEPTDGQDASSH-CLWVDE 285
+K V+ E + ++ + S L EE ++ + + +D+ + LW ++
Sbjct: 998 RKLVEAENSKSKRKKPNEYSKNLEKTNRKSEELSKRNNSSGIKLDSSKDSGTEDMLWTEK 1057
Query: 286 FAPRHYTELLSDDFTNRCLLKWLKLWDLVVFGHERPSRKPRPSVEPARVSKEATAPGKWK 345
+ P+ +EL+ ++ + L WLK W R + R +++ R K G
Sbjct: 1058 YQPQTASELIGNELAIKKLHSWLKDWK------RRAELEERQNLKGKRDEKHEDFSGGI- 1110
Query: 346 SHEQVLEEMLEAGLDPSQRPKQKVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRS 405
+ + D + L+ GP G+GKT + A+ G+ + E+NAS RS
Sbjct: 1111 -------DFKGSSDDEEESRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNASSQRS 1163
Query: 406 PEVFRTRIEAATQMESV--LGAGGKPNCLVIDEIDGAPVAAINVLLSILNRKGPQEVGPQ 463
++++ ATQ V G + C G I+ ++ P++V P
Sbjct: 1164 GRQILSQLKEATQSHQVDKQGVNSQKPCFFNSYYIGKSPKKISSPKKVVT--SPRKVPP- 1220
Query: 464 GPAVPSGGGRR 474
P+ S G +R
Sbjct: 1221 -PSPKSSGPKR 1230
>gi|194306571 replication factor C 5 isoform 2 [Homo sapiens]
Length = 319
Score = 51.2 bits (121), Expect = 5e-06
Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 34/193 (17%)
Query: 371 LLCGPPGLGKTTLAHVIARHA------GYSVVEMNASDDRSPEVFRTRIEAATQMESVLG 424
LL GPPG GKT+ A+ G V+E+NASDDR ++ R I + ++
Sbjct: 36 LLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFK 95
Query: 425 AGGKPNCLVIDEIDGAPVAAINVLLSILNRKGPQEVGPQGPAVPSGGGRRRRAEGGLLMR 484
G K +++DE D A N L ++ +
Sbjct: 96 KGFK--LVILDEADAMTQDAQNALRRVIEK--------------------------FTEN 127
Query: 485 PIICICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEK 544
C+ + + + L+ + F P P +V RL+ V + + + AL
Sbjct: 128 TRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTL 187
Query: 545 TDNDIRACINTLQ 557
+ D+R +N LQ
Sbjct: 188 SSGDMRRALNILQ 200
>gi|194306567 replication factor C 5 isoform 2 [Homo sapiens]
Length = 319
Score = 51.2 bits (121), Expect = 5e-06
Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 34/193 (17%)
Query: 371 LLCGPPGLGKTTLAHVIARHA------GYSVVEMNASDDRSPEVFRTRIEAATQMESVLG 424
LL GPPG GKT+ A+ G V+E+NASDDR ++ R I + ++
Sbjct: 36 LLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFK 95
Query: 425 AGGKPNCLVIDEIDGAPVAAINVLLSILNRKGPQEVGPQGPAVPSGGGRRRRAEGGLLMR 484
G K +++DE D A N L ++ +
Sbjct: 96 KGFK--LVILDEADAMTQDAQNALRRVIEK--------------------------FTEN 127
Query: 485 PIICICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEK 544
C+ + + + L+ + F P P +V RL+ V + + + AL
Sbjct: 128 TRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTL 187
Query: 545 TDNDIRACINTLQ 557
+ D+R +N LQ
Sbjct: 188 SSGDMRRALNILQ 200
>gi|6677723 replication factor C 5 isoform 1 [Homo sapiens]
Length = 340
Score = 51.2 bits (121), Expect = 5e-06
Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 34/193 (17%)
Query: 371 LLCGPPGLGKTTLAHVIARHA------GYSVVEMNASDDRSPEVFRTRIEAATQMESVLG 424
LL GPPG GKT+ A+ G V+E+NASDDR ++ R I + ++
Sbjct: 57 LLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFK 116
Query: 425 AGGKPNCLVIDEIDGAPVAAINVLLSILNRKGPQEVGPQGPAVPSGGGRRRRAEGGLLMR 484
G K +++DE D A N L ++ +
Sbjct: 117 KGFK--LVILDEADAMTQDAQNALRRVIEK--------------------------FTEN 148
Query: 485 PIICICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEK 544
C+ + + + L+ + F P P +V RL+ V + + + AL
Sbjct: 149 TRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTL 208
Query: 545 TDNDIRACINTLQ 557
+ D+R +N LQ
Sbjct: 209 SSGDMRRALNILQ 221
>gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens]
Length = 825
Score = 48.5 bits (114), Expect = 3e-05
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 23/170 (13%)
Query: 12 EDDFHNQFAAELEVLAELEGAS--TPSPSGVPLFTAGRPPRTFEEALARGDAASSPAPAA 69
E+ + +AE+++LA +E + TP+ + PL + ++ APA
Sbjct: 514 EETTAEEASAEIQLLAAIEAPADETPAEAQSPLSE---------------ETSAEEAPAE 558
Query: 70 SVGSSQGGARKRQVDADLQPAGSLPHAPRIKRPRLQVVKRLNFRSEEME---EPPPPDSS 126
S G + +LQP +Q++ +EE +PPP + +
Sbjct: 559 VQSPSAKGVSIEEAPLELQPPSGEETTAEEASAAIQLLAATEASAEEAPAEVQPPPAEEA 618
Query: 127 PTDITPPPSPEDLAELWGHGVSEAAADVGLTRASPAARNPVLRRPPILED 176
P ++ PPP+ E AE+ EA A+V + PA P +PP E+
Sbjct: 619 PAEVQPPPAEEAPAEVQPPPAEEAPAEV---QPPPAEEAPAEVQPPPAEE 665
Score = 41.2 bits (95), Expect = 0.005
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 8/137 (5%)
Query: 34 TPSPSGVPLFTAG---RPPRTFEEALARGDAASSPAPAASVGSSQGGARKRQVDADLQPA 90
+PS GV + A +PP E AA A + + A + A+ PA
Sbjct: 561 SPSAKGVSIEEAPLELQPPSGEETTAEEASAAIQLLAATEASAEEAPAEVQPPPAEEAPA 620
Query: 91 GSLPHAPRIKRPRLQVVKRLNFRSEEMEEPPPPDSSPTDITPPPSPEDLAELWGHGVSEA 150
P P + +V + +PPP + +P ++ PPP+ E AE+ EA
Sbjct: 621 EVQP--PPAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQPPPAEEA 678
Query: 151 AADVGLTRASPAARNPV 167
A+V ++ PA P+
Sbjct: 679 PAEV---QSLPAEETPI 692
Score = 37.7 bits (86), Expect = 0.053
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%)
Query: 24 EVLAELEGASTPSPSGVPLFTAGRP----PRTFEEALARGDAASSPAPAASVGSSQGGAR 79
E AE A SPS + P P + EE A +A+ AA+ S++
Sbjct: 549 ETSAEEAPAEVQSPSAKGVSIEEAPLELQPPSGEETTAEEASAAIQLLAATEASAE---- 604
Query: 80 KRQVDADLQPAGSLPHAPRIKRPRLQVVKRLNFRSEEMEEPPPPDSSPTDITPPPSPEDL 139
+ A++QP + ++ P + + +PPP + +P ++ PPP+ E
Sbjct: 605 --EAPAEVQPPPAEEAPAEVQPPPAE-------EAPAEVQPPPAEEAPAEVQPPPAEEAP 655
Query: 140 AELWGHGVSEAAADV 154
AE+ EA A+V
Sbjct: 656 AEVQPPPAEEAPAEV 670
>gi|31881687 replication factor C 4 [Homo sapiens]
Length = 363
Score = 45.4 bits (106), Expect = 3e-04
Identities = 59/250 (23%), Positives = 95/250 (38%), Gaps = 45/250 (18%)
Query: 319 ERPSRKPRPSVEPARVSKEATAPGKWKSHEQVLEEMLEAGLDPSQRPKQKVALLCGPPGL 378
E KP P VE R + ++ + +L+ L+ + P L GPPG
Sbjct: 31 ENKKAKPVPWVEKYRPKCVDEV-----AFQEEVVAVLKKSLEGADLPN---LLFYGPPGT 82
Query: 379 GKTTLAHVIARHA------GYSVVEMNASDDRSPEVFRTRIEAATQME-SVLGAGGKP-- 429
GKT+ AR V+E+NASD+R +V R +++ Q+ S + GKP
Sbjct: 83 GKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCP 142
Query: 430 --NCLVIDEIDGAPVAAINVLLSILNRKGPQEVGPQGPAVPSGGGRRRRAEGGLLMRPII 487
+++DE D AA L RR E
Sbjct: 143 PFKIVILDEADSMTSAAQAAL-------------------------RRTMEKESKTTRFC 177
Query: 488 CICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEKTDN 547
ICN + + L + F P QRL +++ ++ ++ +A L + ++
Sbjct: 178 LICN-YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEG 236
Query: 548 DIRACINTLQ 557
D+R I LQ
Sbjct: 237 DLRKAITFLQ 246
>gi|4506491 replication factor C 4 [Homo sapiens]
Length = 363
Score = 45.4 bits (106), Expect = 3e-04
Identities = 59/250 (23%), Positives = 95/250 (38%), Gaps = 45/250 (18%)
Query: 319 ERPSRKPRPSVEPARVSKEATAPGKWKSHEQVLEEMLEAGLDPSQRPKQKVALLCGPPGL 378
E KP P VE R + ++ + +L+ L+ + P L GPPG
Sbjct: 31 ENKKAKPVPWVEKYRPKCVDEV-----AFQEEVVAVLKKSLEGADLPN---LLFYGPPGT 82
Query: 379 GKTTLAHVIARHA------GYSVVEMNASDDRSPEVFRTRIEAATQME-SVLGAGGKP-- 429
GKT+ AR V+E+NASD+R +V R +++ Q+ S + GKP
Sbjct: 83 GKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCP 142
Query: 430 --NCLVIDEIDGAPVAAINVLLSILNRKGPQEVGPQGPAVPSGGGRRRRAEGGLLMRPII 487
+++DE D AA L RR E
Sbjct: 143 PFKIVILDEADSMTSAAQAAL-------------------------RRTMEKESKTTRFC 177
Query: 488 CICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEKTDN 547
ICN + + L + F P QRL +++ ++ ++ +A L + ++
Sbjct: 178 LICN-YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEG 236
Query: 548 DIRACINTLQ 557
D+R I LQ
Sbjct: 237 DLRKAITFLQ 246
>gi|31563534 replication factor C 2 isoform 1 [Homo sapiens]
Length = 354
Score = 43.5 bits (101), Expect = 0.001
Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 32/196 (16%)
Query: 371 LLCGPPGLGKTTLAHVIARHA-----GYSVVEMNASDDRSPEVFRTRIEAATQMESVLGA 425
++ GPPG GKTT +AR +++E+NAS+DR +V R +I+ Q + L
Sbjct: 73 IIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTL-P 131
Query: 426 GGKPNCLVIDEIDGAPVAAINVLLSILNRKGPQEVGPQGPAVPSGGGRRRRAEGGLLMRP 485
G+ +++DE D A L R
Sbjct: 132 KGRHKIIILDEADSMTDGAQQAL-----------------------RRTMEIYSKTTRFA 168
Query: 486 IICICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEKT 545
+ C +D+ + ++ + +L + ++++ RL V ++ + L A+
Sbjct: 169 LACNASDKI---IEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTA 225
Query: 546 DNDIRACINTLQFLYS 561
D+R +N LQ +S
Sbjct: 226 QGDMRQALNNLQSTFS 241
>gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens]
Length = 750
Score = 42.7 bits (99), Expect = 0.002
Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 28/126 (22%)
Query: 348 EQVLEEMLEAGLDPSQRPKQKVAL---------LCGPPGLGKTTLAHVIARHAGYSVVEM 398
E + EE+ A L P + P Q AL L GPPG GKT LA +A +G + + +
Sbjct: 481 EDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISV 540
Query: 399 NASDDRSPEVFRTRI---EAATQMESVLGAGGKPNCLVIDEID-----------GAPVAA 444
+ PE+ + E A + P + DE+D GA V
Sbjct: 541 -----KGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRV 595
Query: 445 INVLLS 450
+N LL+
Sbjct: 596 VNQLLT 601
Score = 33.9 bits (76), Expect = 0.76
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 371 LLCGPPGLGKTTLAHVIARHAGYSVVEMNASD------DRSPEVFRTRIEAATQMESVLG 424
LL GPPG GKT LAH IA ++++ A + S + R E A
Sbjct: 196 LLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQA-------- 247
Query: 425 AGGKPNCLVIDEID 438
P + IDEID
Sbjct: 248 VSNAPCIIFIDEID 261
>gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens]
Length = 856
Score = 42.7 bits (99), Expect = 0.002
Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 28/126 (22%)
Query: 348 EQVLEEMLEAGLDPSQRPKQKVAL---------LCGPPGLGKTTLAHVIARHAGYSVVEM 398
E + EE+ A L P + P Q AL L GPPG GKT LA +A +G + + +
Sbjct: 587 EDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISV 646
Query: 399 NASDDRSPEVFRTRI---EAATQMESVLGAGGKPNCLVIDEID-----------GAPVAA 444
+ PE+ + E A + P + DE+D GA V
Sbjct: 647 -----KGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRV 701
Query: 445 INVLLS 450
+N LL+
Sbjct: 702 VNQLLT 707
Score = 33.9 bits (76), Expect = 0.76
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 371 LLCGPPGLGKTTLAHVIARHAGYSVVEMNASD------DRSPEVFRTRIEAATQMESVLG 424
LL GPPG GKT LAH IA ++++ A + S + R E A
Sbjct: 302 LLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQA-------- 353
Query: 425 AGGKPNCLVIDEID 438
P + IDEID
Sbjct: 354 VSNAPCIIFIDEID 367
>gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens]
Length = 753
Score = 41.2 bits (95), Expect = 0.005
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 26/137 (18%)
Query: 314 VVFGHERPSR-KPRPSVEPARVSKEATAPGKWKSHEQVLEEMLEAGLDPSQRPKQKVAL- 371
V G E PS +P+P V +S+ A + L E+L P + P+ AL
Sbjct: 184 VSLGGEPPSEAQPQPEVPLGGLSEAADS----------LRELLRL---PLRYPRALTALG 230
Query: 372 --------LCGPPGLGKTTLAHVIARHAGYSVVEMNAS--DDRSPEVFRTRIEAATQMES 421
L GPPG+GKT L +AR AG ++ ++A P + Q
Sbjct: 231 LAVPRGVLLAGPPGVGKTQLVRAVAREAGAELLAVSAPALQGSRPGETEENVRRVFQRAR 290
Query: 422 VLGAGGKPNCLVIDEID 438
L + G P+ L +DE+D
Sbjct: 291 ELASRG-PSLLFLDEMD 306
Score = 35.8 bits (81), Expect = 0.20
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 28/120 (23%)
Query: 368 KVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSP----------EVFRTRIEAAT 417
K LL GPPG KTTL +A S V ++ +D SP ++FR + A+T
Sbjct: 499 KGVLLYGPPGCAKTTLVRALATSCHCSFVSVSGADLFSPFVGDSEKVLSQIFR-QARAST 557
Query: 418 -------QMESVLGA--GGKPNC--------LVIDEIDGAPVAAINVLLSILNRKGPQEV 460
+++S+LGA K C ++++E+DG + I S +++ QEV
Sbjct: 558 PAILFLDEIDSILGARSASKTGCDVQERVLSVLLNELDGVGLKTIERRGSKSSQQEFQEV 617
>gi|33457350 OTU domain containing 5 isoform a [Homo sapiens]
Length = 571
Score = 41.2 bits (95), Expect = 0.005
Identities = 34/124 (27%), Positives = 45/124 (36%), Gaps = 21/124 (16%)
Query: 118 EEPPPPDSSPTDITPPPSPEDLAELWGHGVSEAAADVGL---------------TRASPA 162
++PPPPD+ P + PPP P A G GV G+ RASP
Sbjct: 7 KKPPPPDADPANEPPPPGPMPPAPRRGGGVGVGGGGTGVGGGDRDRDSGVVGARPRASPP 66
Query: 163 ARNPVLRRPPILEDYVHVTSTEGVRAYLVLRADPMAPGVQGSLLHVPWRGGGQLDLLGVS 222
+ P+ P L + V +A P G G GGG D LG +
Sbjct: 67 PQGPLPGPPGALHRWALAVPPGAVAGPRPQQASPPPCGGPGG------PGGGPGDALGAA 120
Query: 223 LASL 226
A +
Sbjct: 121 AAGV 124
>gi|209977021 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 41.2 bits (95), Expect = 0.005
Identities = 34/124 (27%), Positives = 45/124 (36%), Gaps = 21/124 (16%)
Query: 118 EEPPPPDSSPTDITPPPSPEDLAELWGHGVSEAAADVGL---------------TRASPA 162
++PPPPD+ P + PPP P A G GV G+ RASP
Sbjct: 7 KKPPPPDADPANEPPPPGPMPPAPRRGGGVGVGGGGTGVGGGDRDRDSGVVGARPRASPP 66
Query: 163 ARNPVLRRPPILEDYVHVTSTEGVRAYLVLRADPMAPGVQGSLLHVPWRGGGQLDLLGVS 222
+ P+ P L + V +A P G G GGG D LG +
Sbjct: 67 PQGPLPGPPGALHRWALAVPPGAVAGPRPQQASPPPCGGPGG------PGGGPGDALGAA 120
Query: 223 LASL 226
A +
Sbjct: 121 AAGV 124
>gi|209977019 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 41.2 bits (95), Expect = 0.005
Identities = 34/124 (27%), Positives = 45/124 (36%), Gaps = 21/124 (16%)
Query: 118 EEPPPPDSSPTDITPPPSPEDLAELWGHGVSEAAADVGL---------------TRASPA 162
++PPPPD+ P + PPP P A G GV G+ RASP
Sbjct: 7 KKPPPPDADPANEPPPPGPMPPAPRRGGGVGVGGGGTGVGGGDRDRDSGVVGARPRASPP 66
Query: 163 ARNPVLRRPPILEDYVHVTSTEGVRAYLVLRADPMAPGVQGSLLHVPWRGGGQLDLLGVS 222
+ P+ P L + V +A P G G GGG D LG +
Sbjct: 67 PQGPLPGPPGALHRWALAVPPGAVAGPRPQQASPPPCGGPGG------PGGGPGDALGAA 120
Query: 223 LASL 226
A +
Sbjct: 121 AAGV 124
>gi|206597502 NESH protein isoform 2 [Homo sapiens]
Length = 360
Score = 41.2 bits (95), Expect = 0.005
Identities = 42/133 (31%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 20 AAELEVLAELEGASTPSPSGVPLFTAGRPPRTFEEAL------ARGDAASSPAPAASVGS 73
+ +L L S +P+ T GRPPR E R AASS + AS GS
Sbjct: 151 STQLSRTGTLSRKSIKAPATPASATLGRPPRIPEPVHLPVVPDGRLSAASSASSLASAGS 210
Query: 74 SQG-GARKRQVDADLQPAGSLPHA--PRIKRPRLQVVKRLNFRSEEMEEPPPPDSSPTDI 130
++G G PA LP + P ++V +R EE+ PPP + P +
Sbjct: 211 AEGVGGAPTPKGQAAPPAPPLPSSLDPPPPPAAVEVFQRPP-TLEELSPPPPDEELPLPL 269
Query: 131 -TPPPSPEDLAEL 142
PPP P D EL
Sbjct: 270 DLPPPPPLDGDEL 282
>gi|7705981 NESH protein isoform 1 [Homo sapiens]
Length = 366
Score = 41.2 bits (95), Expect = 0.005
Identities = 42/133 (31%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 20 AAELEVLAELEGASTPSPSGVPLFTAGRPPRTFEEAL------ARGDAASSPAPAASVGS 73
+ +L L S +P+ T GRPPR E R AASS + AS GS
Sbjct: 157 STQLSRTGTLSRKSIKAPATPASATLGRPPRIPEPVHLPVVPDGRLSAASSASSLASAGS 216
Query: 74 SQG-GARKRQVDADLQPAGSLPHA--PRIKRPRLQVVKRLNFRSEEMEEPPPPDSSPTDI 130
++G G PA LP + P ++V +R EE+ PPP + P +
Sbjct: 217 AEGVGGAPTPKGQAAPPAPPLPSSLDPPPPPAAVEVFQRPP-TLEELSPPPPDEELPLPL 275
Query: 131 -TPPPSPEDLAEL 142
PPP P D EL
Sbjct: 276 DLPPPPPLDGDEL 288
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 39.3 bits (90), Expect = 0.018
Identities = 38/147 (25%), Positives = 54/147 (36%), Gaps = 29/147 (19%)
Query: 26 LAELEGASTPSPSGVPLFTAGRPPRTFEEALARGDAASSPAPAASVGSSQGGARKRQVDA 85
+A++ S PS SGV + G + EEA+ + A A+ SS+ A + +++
Sbjct: 1 MAQVRETSLPSGSGVRWISGGGGGASPEEAVEKAGKMEEAAAGATKASSRREAEEMKLEP 60
Query: 86 --DLQPA--------------------------GSLPHAPRIK-RPRLQVVKRLNFRSEE 116
+ +PA S P PR K RPR Q R +
Sbjct: 61 LQEREPAPEENLTWSSSGGDEKVLPSIPLRCHSSSSPVCPRRKPRPRPQPRARSRSQPGL 120
Query: 117 MEEPPPPDSSPTDITPPPSPEDLAELW 143
PPPP P PPP P W
Sbjct: 121 SAPPPPPARPPPPPPPPPPPAPRPRAW 147
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 38.5 bits (88), Expect = 0.031
Identities = 66/271 (24%), Positives = 101/271 (37%), Gaps = 51/271 (18%)
Query: 32 ASTPSPSGVPLFTAGRPPRTFEEALARGDAASSPAPAASVGSSQGGARKRQVDADLQPA- 90
A P+PS VPL T P + EEA+ ++ S A+SV G R + +PA
Sbjct: 585 AEAPAPSPVPLTT----PASAEEAIPLPASSDSERSASSVEGPGGALYARVARREARPAR 640
Query: 91 -----GSLPHAPRIKR-----------PRLQVV--KRLNFRSEEMEEPPPPDSSPTDITP 132
G L +P +R P++ + K + PPPP S + P
Sbjct: 641 ARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGS---EAAP 697
Query: 133 PPSPEDLAELWGHGVSEAAADVGLTRASPAARNPVLRRPPILEDYVHVTSTEGVRAYLVL 192
PS S+ +A + SP R+P R P + E+ + + RA
Sbjct: 698 SPSKRKRTP------SDKSAHT-VEHGSPRTRDPTPRPPGLPEEATALAAPSPPRAR--A 748
Query: 193 RADPMAPGVQG------------SLLHVPWRGG----GQLDLLGVSLASLKKQVDGERRE 236
RA P G G S+L RG G+ ++ + +K ++ +
Sbjct: 749 RAAPRPLGAHGRRRSPAKRAEAASMLAADVRGKTRSLGRAEVALGAQGPREKPAPPQKAK 808
Query: 237 RLLQEAQKLSDTLHSLRSGEEEAAQPLGAPE 267
R + A + G E+AA L APE
Sbjct: 809 RSVPPASPARAPPATETPGPEKAATDLPAPE 839
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 38.5 bits (88), Expect = 0.031
Identities = 66/271 (24%), Positives = 101/271 (37%), Gaps = 51/271 (18%)
Query: 32 ASTPSPSGVPLFTAGRPPRTFEEALARGDAASSPAPAASVGSSQGGARKRQVDADLQPA- 90
A P+PS VPL T P + EEA+ ++ S A+SV G R + +PA
Sbjct: 580 AEAPAPSPVPLTT----PASAEEAIPLPASSDSERSASSVEGPGGALYARVARREARPAR 635
Query: 91 -----GSLPHAPRIKR-----------PRLQVV--KRLNFRSEEMEEPPPPDSSPTDITP 132
G L +P +R P++ + K + PPPP S + P
Sbjct: 636 ARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGS---EAAP 692
Query: 133 PPSPEDLAELWGHGVSEAAADVGLTRASPAARNPVLRRPPILEDYVHVTSTEGVRAYLVL 192
PS S+ +A + SP R+P R P + E+ + + RA
Sbjct: 693 SPSKRKRTP------SDKSAHT-VEHGSPRTRDPTPRPPGLPEEATALAAPSPPRAR--A 743
Query: 193 RADPMAPGVQG------------SLLHVPWRGG----GQLDLLGVSLASLKKQVDGERRE 236
RA P G G S+L RG G+ ++ + +K ++ +
Sbjct: 744 RAAPRPLGAHGRRRSPAKRAEAASMLAADVRGKTRSLGRAEVALGAQGPREKPAPPQKAK 803
Query: 237 RLLQEAQKLSDTLHSLRSGEEEAAQPLGAPE 267
R + A + G E+AA L APE
Sbjct: 804 RSVPPASPARAPPATETPGPEKAATDLPAPE 834
>gi|217416343 fibrosin-like 1 [Homo sapiens]
Length = 1045
Score = 38.1 bits (87), Expect = 0.040
Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 55 ALARGDAASSPAPAASVGSSQGGARKRQVDAD--LQPAGSLPHAPRIKRP----RLQVVK 108
AL + +A + P P S G R R++ A+ L A PHA P R +
Sbjct: 233 ALEKSEAKAGPVPKVS-----GLERSRELSAESFLPTASPAPHAAPCPGPPPGSRANPLV 287
Query: 109 RLNFRSEEMEEPPPPDSSPTDITPPPSPEDLAELWGHGVSEAAADVGLTRASPA 162
+ + P PP P + P P L GH + A GL+R+S A
Sbjct: 288 KKEPPAPHRHTPQPPPPQPRGLLPTHVPASLGAFAGHSQAAANGLHGLSRSSSA 341
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 38.1 bits (87), Expect = 0.040
Identities = 58/237 (24%), Positives = 84/237 (35%), Gaps = 15/237 (6%)
Query: 34 TPSPSGVPLFTAGRPPRTFEEALARGDAASSPAPAASVGSSQGGARKRQVDADLQPAGSL 93
+P+P P T G PR +A A APA Q +R A +L
Sbjct: 1798 SPAPRAQPKGTPG--PRATPRKVAPPCLAQPAAPAKVPSPGQQRSRSLHRPAKTSELATL 1855
Query: 94 PHAPRIKRPRLQVVKRLNFRSEEMEEPPPPDSSPTDITPPPSPEDLAELWGHGVSEAAAD 153
PR P ++ K + S + P S P PP + L G G S
Sbjct: 1856 SQPPRSATPPARLAKTPSSSSSQTS----PASQPLPRKRPPVTQAAGALPGPGASPVPKT 1911
Query: 154 VGLTRASPAARNPVLRRPPILEDYVHVTSTEGVRAYLVLRADPMAPGVQGSLLHVPWRGG 213
T A+ +R P+ ++ + G +P G G+ P G
Sbjct: 1912 PARTL---LAKQHKTQRSPVRIPFMQRPARRGPPPLARAVPEPGPRGRAGTEAG-PGARG 1967
Query: 214 GQLDLLGVSLA----SLKKQVDGERRE-RLLQEAQKLSDTLHSLRSGEEEAAQPLGA 265
G+L L+ V+ A S G RR+ ++E+ L L S E A+ P GA
Sbjct: 1968 GRLGLVRVASALSSGSESSDRSGFRRQLTFIKESPGLRRRRSELSSAESAASAPQGA 2024
Score = 31.2 bits (69), Expect = 4.9
Identities = 34/118 (28%), Positives = 44/118 (37%), Gaps = 16/118 (13%)
Query: 35 PSPSGVPLFTAGRPPRTFEEALARGDAASSPAPAAS-----------VGSSQGGARKRQV 83
P P G AG R L R +A S +S + S G R+R
Sbjct: 1951 PGPRGRAGTEAGPGARGGRLGLVRVASALSSGSESSDRSGFRRQLTFIKESPGLRRRRSE 2010
Query: 84 DADLQPAGSLPH--APRIKRPRLQVVKRLNFRSEEMEEPPPPDSSPTDITPP---PSP 136
+ + A S P +PR RP L V + R EE+ P +P PP PSP
Sbjct: 2011 LSSAESAASAPQGASPRRGRPALPAVFLCSSRCEELRAAPRQGPAPARQRPPAARPSP 2068
>gi|4505725 peroxin1 [Homo sapiens]
Length = 1283
Score = 37.7 bits (86), Expect = 0.053
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 371 LLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMES---VLGAGG 427
LL GPPG GKT LA VIAR + MN + PE+ I A+ Q +
Sbjct: 878 LLYGPPGTGKTLLAGVIARES-----RMNFISVKGPELLSKYIGASEQAVRDIFIRAQAA 932
Query: 428 KPNCLVIDEID 438
KP L DE +
Sbjct: 933 KPCILFFDEFE 943
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 37.7 bits (86), Expect = 0.053
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 33 STPSPSGVPLFTAGRPPRTFEEALARGDAASSPAPAASVGSSQGGARKRQVDADLQPAGS 92
+TP+P G P A P E AP A++ S + A +A + PA +
Sbjct: 1495 ATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMT 1554
Query: 93 LPHAPRIKRPRLQVVKRLNFRSEEMEEPPPPDSSPTDITPPPSPEDL 139
+P +P+ K P + K E PP +P+ PSP++L
Sbjct: 1555 VP-SPK-KTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKEL 1599
Score = 35.8 bits (81), Expect = 0.20
Identities = 30/107 (28%), Positives = 39/107 (36%), Gaps = 16/107 (14%)
Query: 31 GASTPSPSGVPLFTAGRPPRTFEEALARGDAASSPAPAASVGSSQGGARKRQVDADLQPA 90
G +TPSP G P+ A PP + PAA+ S +GG A P
Sbjct: 1093 GPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGL------ATPPPK 1146
Query: 91 GSLPHAPRIKRPRLQVVKRLNFRSEEMEEPPPPDSSPTDITPPPSPE 137
G+ P P P + PPP + T PPSP+
Sbjct: 1147 GA-PTTPAATPPS---------PKGGLATPPPKGAPTTPAATPPSPK 1183
Score = 32.3 bits (72), Expect = 2.2
Identities = 32/112 (28%), Positives = 39/112 (34%), Gaps = 19/112 (16%)
Query: 31 GASTPSPSGVPLFTAGRPPRTFEEALARGDAASSPAPAASVGSSQGGARKRQVDADLQPA 90
G +TPSP G P A PP + PAA+ S +GG A P
Sbjct: 1185 GLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGL------ATPSPK 1238
Query: 91 GSLPHAPRIKRPRLQVVKRLNFRSEEMEEPPPPDSSPTD--ITPPPSPEDLA 140
G+ P P P + PPP +PT TPP LA
Sbjct: 1239 GA-PTTPAATPP----------SPKGGPATPPPKGAPTPPAATPPSLKGGLA 1279
Score = 31.2 bits (69), Expect = 4.9
Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 18/108 (16%)
Query: 31 GASTPSPSGVPLFTAGRPPRTFEEALARGDAASSPAPAASVGSSQGG-ARKRQVDADLQP 89
G +TPS G P A PP + PAA+ S +GG A A P
Sbjct: 1070 GPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTP 1129
Query: 90 AGSLPHAPRIKRPRLQVVKRLNFRSEEMEEPPPPDSSPTDITPPPSPE 137
A + P +P+ + PPP + T PPSP+
Sbjct: 1130 AAT-PPSPK----------------GGLATPPPKGAPTTPAATPPSPK 1160
Score = 31.2 bits (69), Expect = 4.9
Identities = 46/176 (26%), Positives = 63/176 (35%), Gaps = 27/176 (15%)
Query: 32 ASTPSPSGVPLFTAGRPPRTFEEALARGDAAS------SPAPAASVGSSQGGARKRQVDA 85
A+TPS G P T P R +GD S SP A + ++ GA
Sbjct: 1373 AATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPS-KG 1431
Query: 86 DLQPAGSLPHAPRIKRPRLQVVKRLNFRSEEMEEPPPPDSSPTDITPPPSPEDLAELWGH 145
DL P P + + K P K +P P +P PP+P+ +A
Sbjct: 1432 DLTPPAVTPVSLK-KAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVA----- 1485
Query: 146 GVSEAAADVGLTRASP--AARNPVLRRPPILEDYVHVTSTEGVRAYLVLRADPMAP 199
T +SP A P P L + +S + V A R DP+AP
Sbjct: 1486 -----------TSSSPKKAPATPAPMGAPTLPAVI-PSSPKEVPATPSSRRDPIAP 1529
>gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo
sapiens]
Length = 1386
Score = 37.4 bits (85), Expect = 0.069
Identities = 40/128 (31%), Positives = 52/128 (40%), Gaps = 19/128 (14%)
Query: 56 LARGDAAS---SPAPAASVGSSQGGARKRQVDADLQPAGSLPHAPRIKRPRLQVVKRLNF 112
L G AAS SP+PA S SS G R Q + ++ P P A K+P K L +
Sbjct: 1205 LGAGPAASPHLSPSPAPSTASSAPG-RTWQGNGEMTPPLQGPRARFRKKP-----KALPY 1258
Query: 113 RSEEMEEPPPPDSSPTDITPPPSPEDLAEL-WGHGVSEAAADVGLTRASPAARNPVLRRP 171
R E +SP D+ PPP P E W + A + L R R V P
Sbjct: 1259 RRE---------NSPGDLPPPPLPPPEEEASWALELRAAGSMSSLERERSGERKAVQAVP 1309
Query: 172 PILEDYVH 179
+ +H
Sbjct: 1310 LAAQRVLH 1317
>gi|18426904 Werner helicase interacting protein isoform 2 [Homo
sapiens]
Length = 640
Score = 37.4 bits (85), Expect = 0.069
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 14/93 (15%)
Query: 348 EQVLEEMLEAGLDPSQRPKQKVALLCGPPGLGKTTLAHVIARHA---GYSVVEMNASDDR 404
+ +L +LE PS +L GPPG GKTTLAH+IA ++ V ++A++ +
Sbjct: 249 DTLLRSLLETNEIPS-------LILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAK 301
Query: 405 SPEVFRTRIEAATQMESVLGAGGKPNCLVIDEI 437
+ +V R I+ A +S + L IDEI
Sbjct: 302 TNDV-RDVIKQAQNEKSFF---KRKTILFIDEI 330
>gi|18426902 Werner helicase interacting protein isoform 1 [Homo
sapiens]
Length = 665
Score = 37.4 bits (85), Expect = 0.069
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 14/93 (15%)
Query: 348 EQVLEEMLEAGLDPSQRPKQKVALLCGPPGLGKTTLAHVIARHA---GYSVVEMNASDDR 404
+ +L +LE PS +L GPPG GKTTLAH+IA ++ V ++A++ +
Sbjct: 249 DTLLRSLLETNEIPS-------LILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAK 301
Query: 405 SPEVFRTRIEAATQMESVLGAGGKPNCLVIDEI 437
+ +V R I+ A +S + L IDEI
Sbjct: 302 TNDV-RDVIKQAQNEKSFF---KRKTILFIDEI 330
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 37.0 bits (84), Expect = 0.090
Identities = 44/158 (27%), Positives = 65/158 (41%), Gaps = 21/158 (13%)
Query: 37 PSGVPLFTAGRPPRTFEEALARGDAASSPAPAASVGSSQGGARKRQVDADLQPAGSLPHA 96
P+ +P+ +PP ALA + P+P AS A P+ SLP +
Sbjct: 773 PASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPG----------QAPFSPSASLPMS 822
Query: 97 PRIKRPRLQVVKRLNFRSEEMEEPPPPDSSPTDITP--PPSPEDLAELWGHGVSEAAADV 154
P + P Q L + ++ PP P +SPT P PP+P + G ++ A A
Sbjct: 823 P-LATPPPQAPPVL--AAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAP- 878
Query: 155 GLTRASPAARNP--VLRRPPILEDYVHVTST-EGVRAY 189
P +R+P L P + TST E +R Y
Sbjct: 879 --GPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGY 914
Score = 30.8 bits (68), Expect = 6.5
Identities = 46/160 (28%), Positives = 63/160 (39%), Gaps = 43/160 (26%)
Query: 31 GASTP--SPSGVPLFTAG---RPPRTFEEALARGDAA-----SSPAPAASVGSSQG---- 76
GA+ P +P P +AG R P + A RG+ A +SP P +S G + G
Sbjct: 67 GATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRP 126
Query: 77 ---GARKRQVDADLQPA-GSLPHAPRIKRPRLQVVKRLNFRSEEMEEPPPPDSSPTDITP 132
G + ++ A+ A G AP KR L R + S PT TP
Sbjct: 127 GPLGQKGLRISAEETVARGKATEAP--KRSALSAGARRD------------TSGPTPGTP 172
Query: 133 PPSPEDLAELWGHGVSEAAADVGLTRASPAARNPVLRRPP 172
P+ A +VGL R +P+AR RPP
Sbjct: 173 SPA-------MARRSRAAGTEVGLPRPAPSAR----PRPP 201
>gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens]
Length = 490
Score = 37.0 bits (84), Expect = 0.090
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 368 KVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESVLGAGG 427
K L+ GPPG GKT LA +A G + N S +R E ++ +
Sbjct: 242 KGVLMVGPPGTGKTMLAKAVATECGTTF--FNVSSSTLTSKYRGESEKLVRLLFEMARFY 299
Query: 428 KPNCLVIDEID 438
P + IDEID
Sbjct: 300 APTTIFIDEID 310
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,835,809
Number of Sequences: 37866
Number of extensions: 2305807
Number of successful extensions: 12315
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 191
Number of HSP's that attempted gapping in prelim test: 11703
Number of HSP's gapped (non-prelim): 751
length of query: 975
length of database: 18,247,518
effective HSP length: 112
effective length of query: 863
effective length of database: 14,006,526
effective search space: 12087631938
effective search space used: 12087631938
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.