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Search of human proteins with 27477134
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27477134 nucleoporin 210 [Homo sapiens]
(1887 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27477134 nucleoporin 210 [Homo sapiens] 3696 0.0
gi|117414168 nucleoporin 210kDa-like isoform 1 [Homo sapiens] 1545 0.0
gi|226958663 nucleoporin 210kDa-like isoform 2 [Homo sapiens] 1462 0.0
gi|239753643 PREDICTED: similar to Putative uncharacterized prot... 148 4e-35
gi|239753593 PREDICTED: similar to hCG1641141 [Homo sapiens] 77 2e-13
gi|239741961 PREDICTED: hypothetical protein XP_002342363 [Homo ... 77 2e-13
gi|157388955 schlafen family member 12 [Homo sapiens] 35 0.53
gi|38788445 ornithine carbamoyltransferase precursor [Homo sapiens] 35 0.90
gi|55749480 syndecan 1 precursor [Homo sapiens] 33 2.6
gi|29568086 syndecan 1 precursor [Homo sapiens] 33 2.6
gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa... 33 2.6
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 33 3.4
gi|116256363 transmembrane protease, serine 13 [Homo sapiens] 32 4.5
gi|8923415 membrane-associated ring finger (C3HC4) 5 [Homo sapiens] 32 4.5
gi|224458284 Rho GTPase activating protein 23 [Homo sapiens] 32 5.9
gi|83367077 mucin 16 [Homo sapiens] 32 5.9
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 32 5.9
gi|30425394 hypothetical protein LOC128876 [Homo sapiens] 32 5.9
gi|134142824 forkhead box D2 [Homo sapiens] 32 7.7
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] 32 7.7
>gi|27477134 nucleoporin 210 [Homo sapiens]
Length = 1887
Score = 3696 bits (9585), Expect = 0.0
Identities = 1887/1887 (100%), Positives = 1887/1887 (100%)
Query: 1 MAARGRGLLLLTLSVLLAAGPSAAAAKLNIPKVLLPFTRATRVNFTLEASEGCYRWLSTR 60
MAARGRGLLLLTLSVLLAAGPSAAAAKLNIPKVLLPFTRATRVNFTLEASEGCYRWLSTR
Sbjct: 1 MAARGRGLLLLTLSVLLAAGPSAAAAKLNIPKVLLPFTRATRVNFTLEASEGCYRWLSTR 60
Query: 61 PEVASIEPLGLDEQQCSQKAVVQARLTQPARLTSIIFAEDITTGQVLRCDAIVDLIHDIQ 120
PEVASIEPLGLDEQQCSQKAVVQARLTQPARLTSIIFAEDITTGQVLRCDAIVDLIHDIQ
Sbjct: 61 PEVASIEPLGLDEQQCSQKAVVQARLTQPARLTSIIFAEDITTGQVLRCDAIVDLIHDIQ 120
Query: 121 IVSTTRELYLEDSPLELKIQALDSEGNTFSTLAGLVFEWTIVKDSEADRFSDSHNALRIL 180
IVSTTRELYLEDSPLELKIQALDSEGNTFSTLAGLVFEWTIVKDSEADRFSDSHNALRIL
Sbjct: 121 IVSTTRELYLEDSPLELKIQALDSEGNTFSTLAGLVFEWTIVKDSEADRFSDSHNALRIL 180
Query: 181 TFLESTYIPPSYISEMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLIL 240
TFLESTYIPPSYISEMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLIL
Sbjct: 181 TFLESTYIPPSYISEMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLIL 240
Query: 241 ENILLNPAYDVYLMVGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPARPV 300
ENILLNPAYDVYLMVGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPARPV
Sbjct: 241 ENILLNPAYDVYLMVGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPARPV 300
Query: 301 AVLAQDTSMVTALQLGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHPGDRWVL 360
AVLAQDTSMVTALQLGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHPGDRWVL
Sbjct: 301 AVLAQDTSMVTALQLGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHPGDRWVL 360
Query: 361 ETGRLYEITIEVFDKFSNKVYVSDNIRIETVLPAEFFEVLSSSQNGSYHRIRALKRGQTA 420
ETGRLYEITIEVFDKFSNKVYVSDNIRIETVLPAEFFEVLSSSQNGSYHRIRALKRGQTA
Sbjct: 361 ETGRLYEITIEVFDKFSNKVYVSDNIRIETVLPAEFFEVLSSSQNGSYHRIRALKRGQTA 420
Query: 421 IDAALTSVVDQDGGVHILQVPVWNQQEVEIHIPITLYPSILTFPWQPKTGAYQYTIRAHG 480
IDAALTSVVDQDGGVHILQVPVWNQQEVEIHIPITLYPSILTFPWQPKTGAYQYTIRAHG
Sbjct: 421 IDAALTSVVDQDGGVHILQVPVWNQQEVEIHIPITLYPSILTFPWQPKTGAYQYTIRAHG 480
Query: 481 GSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAHDVQNPLHFGEMKVYVIEPHSMEF 540
GSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAHDVQNPLHFGEMKVYVIEPHSMEF
Sbjct: 481 GSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAHDVQNPLHFGEMKVYVIEPHSMEF 540
Query: 541 APCQVEARVGQALELPLRISGLMPGGASEVVTLSDCSHFDLAVEVENQGVFQPLPGRLPP 600
APCQVEARVGQALELPLRISGLMPGGASEVVTLSDCSHFDLAVEVENQGVFQPLPGRLPP
Sbjct: 541 APCQVEARVGQALELPLRISGLMPGGASEVVTLSDCSHFDLAVEVENQGVFQPLPGRLPP 600
Query: 601 GSEHCSGIRVKAEAQGSTTLLVSYRHGHVHLSAKITIAAYLPLKAVDPSSVALVTLGSSK 660
GSEHCSGIRVKAEAQGSTTLLVSYRHGHVHLSAKITIAAYLPLKAVDPSSVALVTLGSSK
Sbjct: 601 GSEHCSGIRVKAEAQGSTTLLVSYRHGHVHLSAKITIAAYLPLKAVDPSSVALVTLGSSK 660
Query: 661 EMLFEGGPRPWILEPSKFFQNVTAEDTDSIGLALFAPHSSRNYQQHWILVTCQALGEQVI 720
EMLFEGGPRPWILEPSKFFQNVTAEDTDSIGLALFAPHSSRNYQQHWILVTCQALGEQVI
Sbjct: 661 EMLFEGGPRPWILEPSKFFQNVTAEDTDSIGLALFAPHSSRNYQQHWILVTCQALGEQVI 720
Query: 721 ALSVGNKPSLTNPFPAVEPAVVKFVCAPPSRLTLAPVYTSPQLDMSCPLLQQNKQVVPVS 780
ALSVGNKPSLTNPFPAVEPAVVKFVCAPPSRLTLAPVYTSPQLDMSCPLLQQNKQVVPVS
Sbjct: 721 ALSVGNKPSLTNPFPAVEPAVVKFVCAPPSRLTLAPVYTSPQLDMSCPLLQQNKQVVPVS 780
Query: 781 SHRNPRLDLAAYDQEGRRFDNFSSLSIQWESTRPVLASIEPELPMQLVSQDDESGQKKLH 840
SHRNPRLDLAAYDQEGRRFDNFSSLSIQWESTRPVLASIEPELPMQLVSQDDESGQKKLH
Sbjct: 781 SHRNPRLDLAAYDQEGRRFDNFSSLSIQWESTRPVLASIEPELPMQLVSQDDESGQKKLH 840
Query: 841 GLQAILVHEASGTTAITATATGYQESHLSSARTKQPHDPLVPLSASIELILVEDVRVSPE 900
GLQAILVHEASGTTAITATATGYQESHLSSARTKQPHDPLVPLSASIELILVEDVRVSPE
Sbjct: 841 GLQAILVHEASGTTAITATATGYQESHLSSARTKQPHDPLVPLSASIELILVEDVRVSPE 900
Query: 901 EVTIYNHPGIQAELRIREGSGYFFLNTSTADVVKVAYQEARGVAMVHPLLPGSSTIMIHD 960
EVTIYNHPGIQAELRIREGSGYFFLNTSTADVVKVAYQEARGVAMVHPLLPGSSTIMIHD
Sbjct: 901 EVTIYNHPGIQAELRIREGSGYFFLNTSTADVVKVAYQEARGVAMVHPLLPGSSTIMIHD 960
Query: 961 LCLVFPAPAKAVVYVSDIQELYIRVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPFMDLK 1020
LCLVFPAPAKAVVYVSDIQELYIRVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPFMDLK
Sbjct: 961 LCLVFPAPAKAVVYVSDIQELYIRVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPFMDLK 1020
Query: 1021 LRAASPIITLVALDEALDNYTITFLIRGVAIGQTSLTASVTNKAGQRINSAPQQIEVFPP 1080
LRAASPIITLVALDEALDNYTITFLIRGVAIGQTSLTASVTNKAGQRINSAPQQIEVFPP
Sbjct: 1021 LRAASPIITLVALDEALDNYTITFLIRGVAIGQTSLTASVTNKAGQRINSAPQQIEVFPP 1080
Query: 1081 FRLMPRKVTLLIGATMQVTSEGGPQPQSNILFSISNESVALVSAAGLVQGLAIGNGTVSG 1140
FRLMPRKVTLLIGATMQVTSEGGPQPQSNILFSISNESVALVSAAGLVQGLAIGNGTVSG
Sbjct: 1081 FRLMPRKVTLLIGATMQVTSEGGPQPQSNILFSISNESVALVSAAGLVQGLAIGNGTVSG 1140
Query: 1141 LVQAVDAETGKVVIISQDLVQVEVLLLRAVRIRAPIMRMRTGTQMPIYVTGITNHQNPFS 1200
LVQAVDAETGKVVIISQDLVQVEVLLLRAVRIRAPIMRMRTGTQMPIYVTGITNHQNPFS
Sbjct: 1141 LVQAVDAETGKVVIISQDLVQVEVLLLRAVRIRAPIMRMRTGTQMPIYVTGITNHQNPFS 1200
Query: 1201 FGNAVPGLTFHWSVTKRDVLDLRGRHHEASIRLPSQYNFAMNVLGRVKGRTGLRVVVKAV 1260
FGNAVPGLTFHWSVTKRDVLDLRGRHHEASIRLPSQYNFAMNVLGRVKGRTGLRVVVKAV
Sbjct: 1201 FGNAVPGLTFHWSVTKRDVLDLRGRHHEASIRLPSQYNFAMNVLGRVKGRTGLRVVVKAV 1260
Query: 1261 DPTSGQLYGLARELSDEIQVQVFEKLQLLNPEIEAEQILMSPNSYIKLQTNRDGAASLSY 1320
DPTSGQLYGLARELSDEIQVQVFEKLQLLNPEIEAEQILMSPNSYIKLQTNRDGAASLSY
Sbjct: 1261 DPTSGQLYGLARELSDEIQVQVFEKLQLLNPEIEAEQILMSPNSYIKLQTNRDGAASLSY 1320
Query: 1321 RVLDGPEKVPVVHVDEKGFLASGSMIGTSTIEVIAQEPFGANQTIIVAVKVSPVSYLRVS 1380
RVLDGPEKVPVVHVDEKGFLASGSMIGTSTIEVIAQEPFGANQTIIVAVKVSPVSYLRVS
Sbjct: 1321 RVLDGPEKVPVVHVDEKGFLASGSMIGTSTIEVIAQEPFGANQTIIVAVKVSPVSYLRVS 1380
Query: 1381 MSPVLHTQNKEALVAVPLGMTVTFTVHFHDNSGDVFHAHSSVLNFATNRDDFVQIGKGPT 1440
MSPVLHTQNKEALVAVPLGMTVTFTVHFHDNSGDVFHAHSSVLNFATNRDDFVQIGKGPT
Sbjct: 1381 MSPVLHTQNKEALVAVPLGMTVTFTVHFHDNSGDVFHAHSSVLNFATNRDDFVQIGKGPT 1440
Query: 1441 NNTCVVRTVSVGLTLLRVWDAEHPGLSDFMPLPVLQAISPELSGAMVVGDVLCLATVLTS 1500
NNTCVVRTVSVGLTLLRVWDAEHPGLSDFMPLPVLQAISPELSGAMVVGDVLCLATVLTS
Sbjct: 1441 NNTCVVRTVSVGLTLLRVWDAEHPGLSDFMPLPVLQAISPELSGAMVVGDVLCLATVLTS 1500
Query: 1501 LEGLSGTWSSSANSILHIDPKTGVAVARAVGSVTVYYEVAGHLRTYKEVVVSVPQRIMAR 1560
LEGLSGTWSSSANSILHIDPKTGVAVARAVGSVTVYYEVAGHLRTYKEVVVSVPQRIMAR
Sbjct: 1501 LEGLSGTWSSSANSILHIDPKTGVAVARAVGSVTVYYEVAGHLRTYKEVVVSVPQRIMAR 1560
Query: 1561 HLHPIQTSFQEATASKVIVAVGDRSSNLRGECTPTQREVIQALHPETLISCQSQFKPAVF 1620
HLHPIQTSFQEATASKVIVAVGDRSSNLRGECTPTQREVIQALHPETLISCQSQFKPAVF
Sbjct: 1561 HLHPIQTSFQEATASKVIVAVGDRSSNLRGECTPTQREVIQALHPETLISCQSQFKPAVF 1620
Query: 1621 DFPSQDVFTVEPQFDTALGQYFCSITMHRLTDKQRKHLSMKKTALVVSASLSSSHFSTEQ 1680
DFPSQDVFTVEPQFDTALGQYFCSITMHRLTDKQRKHLSMKKTALVVSASLSSSHFSTEQ
Sbjct: 1621 DFPSQDVFTVEPQFDTALGQYFCSITMHRLTDKQRKHLSMKKTALVVSASLSSSHFSTEQ 1680
Query: 1681 VGAEVPFSPGLFADQAEILLSNHYTSSEIRVFGAPEVLENLEVKSGSPAVLAFAKEKSFG 1740
VGAEVPFSPGLFADQAEILLSNHYTSSEIRVFGAPEVLENLEVKSGSPAVLAFAKEKSFG
Sbjct: 1681 VGAEVPFSPGLFADQAEILLSNHYTSSEIRVFGAPEVLENLEVKSGSPAVLAFAKEKSFG 1740
Query: 1741 WPSFITYTVGVLDPAAGSQGPLSTTLTFSSPVTNQAIAIPVTVAFVVDRRGPGPYGASLF 1800
WPSFITYTVGVLDPAAGSQGPLSTTLTFSSPVTNQAIAIPVTVAFVVDRRGPGPYGASLF
Sbjct: 1741 WPSFITYTVGVLDPAAGSQGPLSTTLTFSSPVTNQAIAIPVTVAFVVDRRGPGPYGASLF 1800
Query: 1801 QHFLDSYQVMFFTLFALLAGTAVMIIAYHTVCTPRDLAVPAALTPRASPGHSPHYFAASS 1860
QHFLDSYQVMFFTLFALLAGTAVMIIAYHTVCTPRDLAVPAALTPRASPGHSPHYFAASS
Sbjct: 1801 QHFLDSYQVMFFTLFALLAGTAVMIIAYHTVCTPRDLAVPAALTPRASPGHSPHYFAASS 1860
Query: 1861 PTSPNALPPARKASPPSGLWSPAYASH 1887
PTSPNALPPARKASPPSGLWSPAYASH
Sbjct: 1861 PTSPNALPPARKASPPSGLWSPAYASH 1887
>gi|117414168 nucleoporin 210kDa-like isoform 1 [Homo sapiens]
Length = 1888
Score = 1545 bits (4000), Expect = 0.0
Identities = 847/1889 (44%), Positives = 1177/1889 (62%), Gaps = 25/1889 (1%)
Query: 4 RGRGLL----LLTLSVLLAAGPSAAAAKLNIPKVLLPFTRAT-RVNFTLEASEGCYRWLS 58
RG GL L L +L A KLN+P+VLLPF R RV F LEA GCY W S
Sbjct: 11 RGFGLFFFLRLHRLLLLFLVLRGTLANKLNVPQVLLPFGREPGRVPFLLEAQRGCYTWHS 70
Query: 59 TRPEVASIEPLGLDEQQCSQKAVVQARLTQPARLTSIIFAEDITTGQVLRCDAIVDLIHD 118
T + ++EPL + CSQKAV+ A TQP RL+SII A +I T LRCD VD+I+
Sbjct: 71 THHDAVTVEPLYENGTLCSQKAVLIAESTQPIRLSSIILAREIVTDHELRCDVKVDVINS 130
Query: 119 IQIVSTTRELYLEDSPLELKIQALDSEGNTFSTLAGLVFEWTIVKDSEADRFSDSHNALR 178
I+IVS RELY++DSPLEL ++ALD+EGNTFS+LAG++FEW+I +D+E+ R + + +R
Sbjct: 131 IEIVSRARELYVDDSPLELMVRALDAEGNTFSSLAGMMFEWSIAQDNESAR-EELSSKIR 189
Query: 179 ILTFLESTYIPPSYISEMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLL 238
IL + E+ Y PP YI+EMEK KQGD ILVSG++TG++ +K RI E YK V A +RLL
Sbjct: 190 ILKYSEAEYAPPIYIAEMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKKVAAALIRLL 249
Query: 239 ILENILLNPAYDVYLMVGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPAR 298
+LENI L P++D+YL+VGT I Y+V K+ QG++TE+ P + Y L+LQ+ G +
Sbjct: 250 VLENIFLIPSHDIYLLVGTYIKYQVAKMVQGRVTEVKFPLEHYILELQDHRVALNGSHSE 309
Query: 299 PVAVLAQDTSMVTALQLGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHPGDRW 358
VA+L T+MVTA QLGQ++LV H+++ M+ S LPN TIYVVEPG+LGFTV PG+RW
Sbjct: 310 KVAILDDKTAMVTASQLGQTNLVFVHKNVHMRSVSGLPNCTIYVVEPGFLGFTVQPGNRW 369
Query: 359 VLETGRLYEITIEVFDKFSNKVYVSDNIRIETVLPAEFFEVLSSSQNGSYHRIRALKRGQ 418
LE G++Y IT++VFDK S KVY+SDN+RI P E+FE ++ NGSYH ++ALK G
Sbjct: 370 SLEVGQVYVITVDVFDKSSTKVYISDNLRITYDFPKEYFEEQLTTVNGSYHIVKALKDGV 429
Query: 419 TAIDAALTSVVDQDGGVHILQVPVWNQQEVEIHIPITLYPSILTFPWQPKTGAYQYTIRA 478
I+A+LTS++ Q+ + ++ + +QQEV+I+ PI L P L FP P Y+Y ++
Sbjct: 430 VVINASLTSIIYQNKDIQPIKFLIKHQQEVKIYFPIMLTPKFLAFPHHPMGMLYRYKVQV 489
Query: 479 HGGSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAHDVQNPLHFGEMKVYVIEPHSM 538
GGSGNF+W+SS+ V VT KGV+T G G S + A DVQNP +GE+K++V++ + M
Sbjct: 490 EGGSGNFTWTSSNETVVIVTTKGVVTAGQVRGNSTVLARDVQNPFRYGEIKIHVLKLNKM 549
Query: 539 EFAPCQVEARVGQALELPLRISGLMPGGASEVVTLSDCSHFDLAVEVENQGVFQPLP-GR 597
E P + +GQ +E+P+ + + E + +DCSH L + ++ QGVF L G
Sbjct: 550 ELLPFHADVEIGQIIEIPIAMYHINKE-TKEAMAFTDCSHLSLDLNMDKQGVFTLLKEGI 608
Query: 598 LPPGSEHCSGIRVKAEAQGSTTLLVSYRHGHVHLSAKITIAAYLPLKAVDPSSVALVTLG 657
PG HCS + A++ G T + VS +L + T AAY PLKA++P VALVT
Sbjct: 609 QRPGPMHCSSTHIAAKSLGHTLVTVSVNECDKYLESSATFAAYEPLKALNPVEVALVTWQ 668
Query: 658 SSKEMLFEGGPRPWILEPSKFFQNVTAEDTDSIGLALFAPHSSRNYQQHWILVTCQALGE 717
S KEM+FEGGPRPWILEPS+FF + AE T+ IG+A S R Q+ + C LGE
Sbjct: 669 SVKEMVFEGGPRPWILEPSRFFLELNAEKTEKIGIAQVWLPSKRKQNQYIYRIQCLDLGE 728
Query: 718 QVIALSVGNKPSLTNPFPAVEPAVVKFVCAPPSRLTLAPVYTSPQLDMSCPLLQQNKQVV 777
QV+ +GN P + NP PAVE V+F+CA P+ +++ PVY P CPL Q NK ++
Sbjct: 729 QVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASMSVTPVYKVPAGAQPCPLPQHNKWLI 788
Query: 778 PVSSHRNPRLDLAAYDQEGRRFDNFSSLSIQWESTRPVLASIEPELPMQLVSQDDESGQK 837
PVS R+ L+LA +DQ R+FDNFSSL ++W+S+ LA E +++V++DD SGQ
Sbjct: 789 PVSRLRDTVLELAVFDQHRRKFDNFSSLMLEWKSSNETLAHFEDYKSVEMVAKDDGSGQT 848
Query: 838 KLHGLQAILVHEASGTTAITATATGYQESHLSSARTKQPHD-PLVPLSASIELILVEDVR 896
+LHG Q + VH+ GT I GY E K P + +P S +EL+LV+DV
Sbjct: 849 RLHGHQILKVHQIKGTVLIGVNFVGYSEK-------KSPKEISNLPRSVDVELLLVDDVT 901
Query: 897 VSPEEVTIYNHPGIQAELRIREGSGYFFLNTSTADVVKVAYQEARGVAMVHPLLPGSSTI 956
V PE TIYNHP ++ + EGSGYF +N+S VV + Y EA + PL PG T+
Sbjct: 902 VVPENATIYNHPDVKETFSLVEGSGYFLVNSSEQGVVTITYMEAESSVELVPLHPGFFTL 961
Query: 957 MIHDLCLVFPAPAKAVVYVSDIQELYIRVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPF 1016
++DLCL F PA A + VSDIQEL + ++DKVEI KTV VRVL K+PF KYF
Sbjct: 962 EVYDLCLAFLGPATAHLRVSDIQELELDLIDKVEIDKTVLVTVRVLGSSKRPFQNKYFRN 1021
Query: 1017 MDLKLRAASPIITLVALDEALDNYTITFLIRGVAIGQTSLTASVTNKAGQRINSAPQQIE 1076
M+LKL+ AS I+TL +++ D Y+ +++R IGQT+L A +K G++ S P+ IE
Sbjct: 1022 MELKLQLASAIVTLTPMEQQ-DEYSENYILRATTIGQTTLVAIAKDKMGRKYTSTPRHIE 1080
Query: 1077 VFPPFRLMPRKVTLLIGATMQVTSEGGPQPQSNILFSISNESVALVSAAGLVQGLAIGNG 1136
VFPPFRL+P K+TL+ MQV SEGGPQPQS + FSISN++VA+V+ G V G +G
Sbjct: 1081 VFPPFRLLPEKMTLIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTA 1140
Query: 1137 TVSGLVQAVDAETGKVVIISQDLVQVEVLLLRAVRIRAPIMRMRTGTQMPIYVTGITNHQ 1196
V G +Q V+ +TGKV++ SQD VQ+EV+ LRAVRI A R+ T T+MP+YV G+T+ Q
Sbjct: 1141 VVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQ 1200
Query: 1197 NPFSFGNAVPGLTFHWSVTKRDVLDLRGRHHEASIRLPSQYNFAMNVLGRVKGRTGLRVV 1256
PFSF NA PGLTFHWS++KRDVLDL RH E ++LP ++NFAM V + GRT ++V
Sbjct: 1201 TPFSFSNANPGLTFHWSMSKRDVLDLVPRHSEVFLQLPVEHNFAMVVHTKAAGRTSIKVT 1260
Query: 1257 VKAVDPTSGQLYGLARELSDEIQVQVFEKLQLLNPEIEAEQILMSPNSYIKLQTNRDGAA 1316
V ++ +SGQ G ELSDE+Q+ VFEKLQL PE + EQILM NS +KL TNR+GAA
Sbjct: 1261 VHCMNSSSGQFEGNLLELSDEVQILVFEKLQLFYPECQPEQILMPINSQLKLHTNREGAA 1320
Query: 1317 SLSYRVLDGPEKVPVVHVDEKGFLASGSMIGTSTIEVIAQEPFGANQTIIVAVKVSPVSY 1376
+S RVL V+ D +G L +GS+ GT+ +EV + EPFG NQT I V+V+PV+Y
Sbjct: 1321 FVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFGVNQTTITGVQVAPVTY 1380
Query: 1377 LRVSMSPVLHTQNKEALVAVPLGMTVTFTVHFHDNSGDVFHAHSSVLNFATNRDDFVQIG 1436
LRVS P L+T L A PLGM++TFTV F+++ G+ FH H++ L A NRDD + IG
Sbjct: 1381 LRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFHTHNTQLYLALNRDDLLHIG 1440
Query: 1437 KGPTNNTCVVRTVSVGLTLLRVWDAEHPGLSDFMPLPVLQAISPELSGAMVVGDVLCLAT 1496
G N T + + V+ GLTL+ +WD HPG++D++P+ V AI P+ + VGD++C +T
Sbjct: 1441 PGNKNYTYMAQAVNRGLTLVGLWDRRHPGMADYIPVAVEHAIEPD-TKLTFVGDIICFST 1499
Query: 1497 VLTSLEGLSGTWSSSANSILHIDPKTGVAVARAVGSVTVYYEVAGHLRTYKEVVVSVPQR 1556
L S G G W SAN+IL D TGV VAR+ G+ +++++ G ++TY+EVVV+ R
Sbjct: 1500 HLVSQHGEPGIWMISANNILQTDIVTGVGVARSPGTAMIFHDIPGVVKTYREVVVNASSR 1559
Query: 1557 IMARH-LHPIQTSFQEATASKVIVAVGDRSSNLRGECTPTQR-EVIQALHPETLISCQSQ 1614
+M + L T+ +T K+ + G NL+G CTP Q + + L P TL+ C Q
Sbjct: 1560 LMLSYDLKTYLTNTLNSTVFKLFITTGRNGVNLKGFCTPNQALAITKVLLPATLMLCHVQ 1619
Query: 1615 FKPAVFDFPSQDVFTVEPQFDTALGQYFCSITMHRLTDKQRKHLSMKKTALVVSASLSSS 1674
F + D P+ VF V F G Y C I + +++ + LS+ T++ A+L S
Sbjct: 1620 FSNTLLDIPASKVFQVHSDFSMEKGVYVCIIKVRPQSEELLQALSVADTSVYGWATLVSE 1679
Query: 1675 HFSTEQVGAEVPFSPGLFADQAEILLSNHYTSSEIRVFGAPEVLENLEVKSGSPAVLAFA 1734
+PF P + +Q+E++LS+ EIRV G VL LEV S SP ++
Sbjct: 1680 RSKNGMQRILIPFIPAFYINQSELVLSHKQDIGEIRVLGVDRVLRKLEVISSSPVLVVAG 1739
Query: 1735 KEKSFGWPSFITYTVGVLDPAAGSQGPLSTTLTFSSPVTNQAIAIPVTVAFVVDRRGPGP 1794
S P Y+V V++ + Q + S +T+Q+ A V V + D+ G
Sbjct: 1740 HSHSPLTPGLAIYSVRVVNFTSFQQMASPVFINISCVLTSQSEA--VVVRAMKDKLGADH 1797
Query: 1795 -YGASLFQHFLDSYQVMFFTLFALLAGTAVMIIAYHTVCTPRDLAVPAALTPRASPGHSP 1853
+++ + F SYQ++ TLFA+LA TA + +AY+ + VP P
Sbjct: 1798 CEDSAILKRFTGSYQILLLTLFAVLASTASIFLAYNAFLN-KIQTVPVVYVPTLGTPQPG 1856
Query: 1854 HYFAASSPTSPNAL-PPARKASPPSGLWS 1881
+ + SSP +L PP ++ LWS
Sbjct: 1857 FFNSTSSPPHFMSLQPPLAQSRLQHWLWS 1885
>gi|226958663 nucleoporin 210kDa-like isoform 2 [Homo sapiens]
Length = 1736
Score = 1462 bits (3785), Expect = 0.0
Identities = 784/1677 (46%), Positives = 1074/1677 (64%), Gaps = 20/1677 (1%)
Query: 4 RGRGLL----LLTLSVLLAAGPSAAAAKLNIPKVLLPFTRAT-RVNFTLEASEGCYRWLS 58
RG GL L L +L A KLN+P+VLLPF R RV F LEA GCY W S
Sbjct: 11 RGFGLFFFLRLHRLLLLFLVLRGTLANKLNVPQVLLPFGREPGRVPFLLEAQRGCYTWHS 70
Query: 59 TRPEVASIEPLGLDEQQCSQKAVVQARLTQPARLTSIIFAEDITTGQVLRCDAIVDLIHD 118
T + ++EPL + CSQKAV+ A TQP RL+SII A +I T LRCD VD+I+
Sbjct: 71 THHDAVTVEPLYENGTLCSQKAVLIAESTQPIRLSSIILAREIVTDHELRCDVKVDVINS 130
Query: 119 IQIVSTTRELYLEDSPLELKIQALDSEGNTFSTLAGLVFEWTIVKDSEADRFSDSHNALR 178
I+IVS RELY++DSPLEL ++ALD+EGNTFS+LAG++FEW+I +D+E+ R + + +R
Sbjct: 131 IEIVSRARELYVDDSPLELMVRALDAEGNTFSSLAGMMFEWSIAQDNESAR-EELSSKIR 189
Query: 179 ILTFLESTYIPPSYISEMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLL 238
IL + E+ Y PP YI+EMEK KQGD ILVSG++TG++ +K RI E YK V A +RLL
Sbjct: 190 ILKYSEAEYAPPIYIAEMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKKVAAALIRLL 249
Query: 239 ILENILLNPAYDVYLMVGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPAR 298
+LENI L P++D+YL+VGT I Y+V K+ QG++TE+ P + Y L+LQ+ G +
Sbjct: 250 VLENIFLIPSHDIYLLVGTYIKYQVAKMVQGRVTEVKFPLEHYILELQDHRVALNGSHSE 309
Query: 299 PVAVLAQDTSMVTALQLGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHPGDRW 358
VA+L T+MVTA QLGQ++LV H+++ M+ S LPN TIYVVEPG+LGFTV PG+RW
Sbjct: 310 KVAILDDKTAMVTASQLGQTNLVFVHKNVHMRSVSGLPNCTIYVVEPGFLGFTVQPGNRW 369
Query: 359 VLETGRLYEITIEVFDKFSNKVYVSDNIRIETVLPAEFFEVLSSSQNGSYHRIRALKRGQ 418
LE G++Y IT++VFDK S KVY+SDN+RI P E+FE ++ NGSYH ++ALK G
Sbjct: 370 SLEVGQVYVITVDVFDKSSTKVYISDNLRITYDFPKEYFEEQLTTVNGSYHIVKALKDGV 429
Query: 419 TAIDAALTSVVDQDGGVHILQVPVWNQQEVEIHIPITLYPSILTFPWQPKTGAYQYTIRA 478
I+A+LTS++ Q+ + ++ + +QQEV+I+ PI L P L FP P Y+Y ++
Sbjct: 430 VVINASLTSIIYQNKDIQPIKFLIKHQQEVKIYFPIMLTPKFLAFPHHPMGMLYRYKVQV 489
Query: 479 HGGSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAHDVQNPLHFGEMKVYVIEPHSM 538
GGSGNF+W+SS+ V VT KGV+T G G S + A DVQNP +GE+K++V++ + M
Sbjct: 490 EGGSGNFTWTSSNETVVIVTTKGVVTAGQVRGNSTVLARDVQNPFRYGEIKIHVLKLNKM 549
Query: 539 EFAPCQVEARVGQALELPLRISGLMPGGASEVVTLSDCSHFDLAVEVENQGVFQPLP-GR 597
E P + +GQ +E+P+ + + E + +DCSH L + ++ QGVF L G
Sbjct: 550 ELLPFHADVEIGQIIEIPIAMYHINKE-TKEAMAFTDCSHLSLDLNMDKQGVFTLLKEGI 608
Query: 598 LPPGSEHCSGIRVKAEAQGSTTLLVSYRHGHVHLSAKITIAAYLPLKAVDPSSVALVTLG 657
PG HCS + A++ G T + VS +L + T AAY PLKA++P VALVT
Sbjct: 609 QRPGPMHCSSTHIAAKSLGHTLVTVSVNECDKYLESSATFAAYEPLKALNPVEVALVTWQ 668
Query: 658 SSKEMLFEGGPRPWILEPSKFFQNVTAEDTDSIGLALFAPHSSRNYQQHWILVTCQALGE 717
S KEM+FEGGPRPWILEPS+FF + AE T+ IG+A S R Q+ + C LGE
Sbjct: 669 SVKEMVFEGGPRPWILEPSRFFLELNAEKTEKIGIAQVWLPSKRKQNQYIYRIQCLDLGE 728
Query: 718 QVIALSVGNKPSLTNPFPAVEPAVVKFVCAPPSRLTLAPVYTSPQLDMSCPLLQQNKQVV 777
QV+ +GN P + NP PAVE V+F+CA P+ +++ PVY P CPL Q NK ++
Sbjct: 729 QVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASMSVTPVYKVPAGAQPCPLPQHNKWLI 788
Query: 778 PVSSHRNPRLDLAAYDQEGRRFDNFSSLSIQWESTRPVLASIEPELPMQLVSQDDESGQK 837
PVS R+ L+LA +DQ R+FDNFSSL ++W+S+ LA E +++V++DD SGQ
Sbjct: 789 PVSRLRDTVLELAVFDQHRRKFDNFSSLMLEWKSSNETLAHFEDYKSVEMVAKDDGSGQT 848
Query: 838 KLHGLQAILVHEASGTTAITATATGYQESHLSSARTKQPHD-PLVPLSASIELILVEDVR 896
+LHG Q + VH+ GT I GY E K P + +P S +EL+LV+DV
Sbjct: 849 RLHGHQILKVHQIKGTVLIGVNFVGYSEK-------KSPKEISNLPRSVDVELLLVDDVT 901
Query: 897 VSPEEVTIYNHPGIQAELRIREGSGYFFLNTSTADVVKVAYQEARGVAMVHPLLPGSSTI 956
V PE TIYNHP ++ + EGSGYF +N+S VV + Y EA + PL PG T+
Sbjct: 902 VVPENATIYNHPDVKETFSLVEGSGYFLVNSSEQGVVTITYMEAESSVELVPLHPGFFTL 961
Query: 957 MIHDLCLVFPAPAKAVVYVSDIQELYIRVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPF 1016
++DLCL F PA A + VSDIQEL + ++DKVEI KTV VRVL K+PF KYF
Sbjct: 962 EVYDLCLAFLGPATAHLRVSDIQELELDLIDKVEIDKTVLVTVRVLGSSKRPFQNKYFRN 1021
Query: 1017 MDLKLRAASPIITLVALDEALDNYTITFLIRGVAIGQTSLTASVTNKAGQRINSAPQQIE 1076
M+LKL+ AS I+TL +++ D Y+ +++R IGQT+L A +K G++ S P+ IE
Sbjct: 1022 MELKLQLASAIVTLTPMEQQ-DEYSENYILRATTIGQTTLVAIAKDKMGRKYTSTPRHIE 1080
Query: 1077 VFPPFRLMPRKVTLLIGATMQVTSEGGPQPQSNILFSISNESVALVSAAGLVQGLAIGNG 1136
VFPPFRL+P K+TL+ MQV SEGGPQPQS + FSISN++VA+V+ G V G +G
Sbjct: 1081 VFPPFRLLPEKMTLIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTA 1140
Query: 1137 TVSGLVQAVDAETGKVVIISQDLVQVEVLLLRAVRIRAPIMRMRTGTQMPIYVTGITNHQ 1196
V G +Q V+ +TGKV++ SQD VQ+EV+ LRAVRI A R+ T T+MP+YV G+T+ Q
Sbjct: 1141 VVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQ 1200
Query: 1197 NPFSFGNAVPGLTFHWSVTKRDVLDLRGRHHEASIRLPSQYNFAMNVLGRVKGRTGLRVV 1256
PFSF NA PGLTFHWS++KRDVLDL RH E ++LP ++NFAM V + GRT ++V
Sbjct: 1201 TPFSFSNANPGLTFHWSMSKRDVLDLVPRHSEVFLQLPVEHNFAMVVHTKAAGRTSIKVT 1260
Query: 1257 VKAVDPTSGQLYGLARELSDEIQVQVFEKLQLLNPEIEAEQILMSPNSYIKLQTNRDGAA 1316
V ++ +SGQ G ELSDE+Q+ VFEKLQL PE + EQILM NS +KL TNR+GAA
Sbjct: 1261 VHCMNSSSGQFEGNLLELSDEVQILVFEKLQLFYPECQPEQILMPINSQLKLHTNREGAA 1320
Query: 1317 SLSYRVLDGPEKVPVVHVDEKGFLASGSMIGTSTIEVIAQEPFGANQTIIVAVKVSPVSY 1376
+S RVL V+ D +G L +GS+ GT+ +EV + EPFG NQT I V+V+PV+Y
Sbjct: 1321 FVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFGVNQTTITGVQVAPVTY 1380
Query: 1377 LRVSMSPVLHTQNKEALVAVPLGMTVTFTVHFHDNSGDVFHAHSSVLNFATNRDDFVQIG 1436
LRVS P L+T L A PLGM++TFTV F+++ G+ FH H++ L A NRDD + IG
Sbjct: 1381 LRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFHTHNTQLYLALNRDDLLHIG 1440
Query: 1437 KGPTNNTCVVRTVSVGLTLLRVWDAEHPGLSDFMPLPVLQAISPELSGAMVVGDVLCLAT 1496
G N T + + V+ GLTL+ +WD HPG++D++P+ V AI P+ + VGD++C +T
Sbjct: 1441 PGNKNYTYMAQAVNRGLTLVGLWDRRHPGMADYIPVAVEHAIEPD-TKLTFVGDIICFST 1499
Query: 1497 VLTSLEGLSGTWSSSANSILHIDPKTGVAVARAVGSVTVYYEVAGHLRTYKEVVVSVPQR 1556
L S G G W SAN+IL D TGV VAR+ G+ +++++ G ++TY+EVVV+ R
Sbjct: 1500 HLVSQHGEPGIWMISANNILQTDIVTGVGVARSPGTAMIFHDIPGVVKTYREVVVNASSR 1559
Query: 1557 IMARH-LHPIQTSFQEATASKVIVAVGDRSSNLRGECTPTQR-EVIQALHPETLISCQSQ 1614
+M + L T+ +T K+ + G NL+G CTP Q + + L P TL+ C Q
Sbjct: 1560 LMLSYDLKTYLTNTLNSTVFKLFITTGRNGVNLKGFCTPNQALAITKVLLPATLMLCHVQ 1619
Query: 1615 FKPAVFDFPSQDVFTVEPQFDTALGQYFCSITMHRLTDKQRKHLSMKKTALVVSASL 1671
F + D P+ VF V F S + R T + L L +AS+
Sbjct: 1620 FSNTLLDIPASKVFQVHSDFSMEKDHCEDSAILKRFTGSYQILLLTLFAVLASTASI 1676
Score = 42.0 bits (97), Expect = 0.006
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 1797 ASLFQHFLDSYQVMFFTLFALLAGTAVMIIAYHTVCTPRDLAVPAALTPRASPGHSPHYF 1856
+++ + F SYQ++ TLFA+LA TA + +AY+ + VP P +
Sbjct: 1649 SAILKRFTGSYQILLLTLFAVLASTASIFLAYNAFLN-KIQTVPVVYVPTLGTPQPGFFN 1707
Query: 1857 AASSPTSPNAL-PPARKASPPSGLWS 1881
+ SSP +L PP ++ LWS
Sbjct: 1708 STSSPPHFMSLQPPLAQSRLQHWLWS 1733
>gi|239753643 PREDICTED: similar to Putative uncharacterized protein
C3orf46 [Homo sapiens]
Length = 149
Score = 148 bits (374), Expect = 4e-35
Identities = 80/135 (59%), Positives = 92/135 (68%), Gaps = 37/135 (27%)
Query: 1133 IGNGTVSGLVQAVDAETGKVVIISQDLVQVEVLLLRAVRIRAPIMRMRTGTQ-------- 1184
+G GTVSGLVQ VDAETGKVVIISQDLVQV+VLLL AVRIR+PIM++R GTQ
Sbjct: 1 MGKGTVSGLVQVVDAETGKVVIISQDLVQVKVLLLGAVRIRSPIMQIRMGTQLGKNWIHL 60
Query: 1185 -----------------------------MPIYVTGITNHQNPFSFGNAVPGLTFHWSVT 1215
M IY+T ITNHQNPFSFGNA+PGLTFHWSVT
Sbjct: 61 PLLEGGSTASGGIPSAGTPLVTRPDFSPPMSIYITWITNHQNPFSFGNAMPGLTFHWSVT 120
Query: 1216 KRDVLDLRGRHHEAS 1230
KRD+LDL+G+HH++S
Sbjct: 121 KRDILDLQGQHHKSS 135
>gi|239753593 PREDICTED: similar to hCG1641141 [Homo sapiens]
Length = 138
Score = 76.6 bits (187), Expect = 2e-13
Identities = 45/76 (59%), Positives = 49/76 (64%), Gaps = 21/76 (27%)
Query: 1685 VPFSPGLFADQAEILLSNHYTSSEIRVFGAPEVLENLE--------------------VK 1724
VPFSP L+A Q+EILLSNHYT+SE+RVFG PEVLENLE VK
Sbjct: 36 VPFSPDLYAKQSEILLSNHYTTSEVRVFGVPEVLENLECDLGRGPHPYSLGPRRKAQHVK 95
Query: 1725 SGSPAVLAFAKEKSFG 1740
SGSPAVLA K KS G
Sbjct: 96 SGSPAVLALVK-KSLG 110
>gi|239741961 PREDICTED: hypothetical protein XP_002342363 [Homo
sapiens]
Length = 138
Score = 76.6 bits (187), Expect = 2e-13
Identities = 45/76 (59%), Positives = 49/76 (64%), Gaps = 21/76 (27%)
Query: 1685 VPFSPGLFADQAEILLSNHYTSSEIRVFGAPEVLENLE--------------------VK 1724
VPFSP L+A Q+EILLSNHYT+SE+RVFG PEVLENLE VK
Sbjct: 36 VPFSPDLYAKQSEILLSNHYTTSEVRVFGVPEVLENLECDLGRGPHPYSLGPRRKAQHVK 95
Query: 1725 SGSPAVLAFAKEKSFG 1740
SGSPAVLA K KS G
Sbjct: 96 SGSPAVLALVK-KSLG 110
>gi|157388955 schlafen family member 12 [Homo sapiens]
Length = 578
Score = 35.4 bits (80), Expect = 0.53
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 92 LTSIIFAEDITTGQVLRCDAIVDLIHDIQIVSTTRELYLEDSPLELKIQALDSEGNTFST 151
L+S ++ DIT+ +V+ A ++ + D++ T LYL L + E N
Sbjct: 122 LSSNLYKRDITSAKVMNATAALEFLKDMK--KTRGRLYLRPELLAKRPCVDIQEENNMKA 179
Query: 152 LAGLVFEWTIVKDSEADRFSDSHNALRILTFLESTYI 188
LAG+ F+ T E DR LTF EST++
Sbjct: 180 LAGVFFDRT-----ELDRKEK-------LTFTESTHV 204
>gi|38788445 ornithine carbamoyltransferase precursor [Homo sapiens]
Length = 354
Score = 34.7 bits (78), Expect = 0.90
Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 1425 FATNRDDFVQIGKGPTNNTCVVRTVSVGLTLLRVW-DAEHPGLSDFMPLPVLQAISPELS 1483
F T +D + + + T+ V+ +++ + L RV+ ++ L+ +P++ +S
Sbjct: 110 FLTTQDIHLGVNESLTDTARVLSSMADAV-LARVYKQSDLDTLAKEASIPIINGLSDLYH 168
Query: 1484 GAMVVGDVLCLATVLTSLEGLSGTWSSSANSILH 1517
++ D L L +SL+GL+ +W N+ILH
Sbjct: 169 PIQILADYLTLQEHYSSLKGLTLSWIGDGNNILH 202
>gi|55749480 syndecan 1 precursor [Homo sapiens]
Length = 310
Score = 33.1 bits (74), Expect = 2.6
Identities = 38/132 (28%), Positives = 52/132 (39%), Gaps = 13/132 (9%)
Query: 817 ASIEPELPMQLVSQDDESGQKKLHGLQAILVHEASGTTAITATATGYQESHLSSARTKQP 876
A + PE+ L +++ E+ + Q H+AS TTA TA H R QP
Sbjct: 104 AVVLPEVEPGLTAREQEATPRPRETTQLPTTHQASTTTATTAQEPATSHPH----RDMQP 159
Query: 877 --HD---PLVPLSASIELILVEDVRVSPEEVTIYNHPGIQAELRIREGSGY--FFLNTST 929
H+ P P A + ED S E G ++L EGSG F TS
Sbjct: 160 GHHETSTPAGPSQADLHTPHTEDGGPSATERAA--EDGASSQLPAAEGSGEQDFTFETSG 217
Query: 930 ADVVKVAYQEAR 941
+ VA + R
Sbjct: 218 ENTAVVAVEPDR 229
>gi|29568086 syndecan 1 precursor [Homo sapiens]
Length = 310
Score = 33.1 bits (74), Expect = 2.6
Identities = 38/132 (28%), Positives = 52/132 (39%), Gaps = 13/132 (9%)
Query: 817 ASIEPELPMQLVSQDDESGQKKLHGLQAILVHEASGTTAITATATGYQESHLSSARTKQP 876
A + PE+ L +++ E+ + Q H+AS TTA TA H R QP
Sbjct: 104 AVVLPEVEPGLTAREQEATPRPRETTQLPTTHQASTTTATTAQEPATSHPH----RDMQP 159
Query: 877 --HD---PLVPLSASIELILVEDVRVSPEEVTIYNHPGIQAELRIREGSGY--FFLNTST 929
H+ P P A + ED S E G ++L EGSG F TS
Sbjct: 160 GHHETSTPAGPSQADLHTPHTEDGGPSATERAA--EDGASSQLPAAEGSGEQDFTFETSG 217
Query: 930 ADVVKVAYQEAR 941
+ VA + R
Sbjct: 218 ENTAVVAVEPDR 229
>gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo
sapiens]
Length = 2113
Score = 33.1 bits (74), Expect = 2.6
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 1835 RDLAVPA--ALTPRASPGHSPHYFAASSPTSPNALPPARKASPP 1876
R LA+PA A T +PG +P A PT+P+A PPA PP
Sbjct: 2032 RTLAMPAPPAGTAPPAPGPTP----AEPPTAPSAAPPAPSTEPP 2071
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 32.7 bits (73), Expect = 3.4
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 1831 VCTPRDLAVPAALTPRASPGHSPHYFAASSPTSPNALPPARKASPPSGLWSPAYA 1885
V TP + A PAA P SP AA+ PT PA PP SPA A
Sbjct: 994 VSTPEEPASPAAAVPTPEEPTSP---AAAVPTPEEPTSPAAAVPPPEEPTSPAAA 1045
>gi|116256363 transmembrane protease, serine 13 [Homo sapiens]
Length = 567
Score = 32.3 bits (72), Expect = 4.5
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 1833 TPRDLAVPAALTP-RASPGHSPHYFAASSPTSPNALPPARKASPPSGLWSPAYAS 1886
TP A PA +P +ASP +P A+ + SP PP R ASP G SPA AS
Sbjct: 29 TPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGR-ASP--GRASPAQAS 80
>gi|8923415 membrane-associated ring finger (C3HC4) 5 [Homo sapiens]
Length = 278
Score = 32.3 bits (72), Expect = 4.5
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 1456 LRVWDAEHPGLSDFMPLPVLQAISPELSGAMVVGDVLCLATVLTSLEGLSGTWS-SSANS 1514
L++ ++ PG+ P+P + A + L+ + +LC A V ++ + G SS NS
Sbjct: 176 LQILNSIFPGIG--CPVPRIPAEANPLADHVSATRILCGALVFPTIATIVGKLMFSSVNS 233
Query: 1515 ILHIDPKTGVAVARAVGSVTVYYEVAGHLRTYKEVVVSVPQR 1556
L G+A G+ VY++ +LR +++ P++
Sbjct: 234 NLQRTILGGIAFVAIKGAFKVYFKQQQYLRQAHRKILNYPEQ 275
>gi|224458284 Rho GTPase activating protein 23 [Homo sapiens]
Length = 1397
Score = 32.0 bits (71), Expect = 5.9
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 1845 PRASPGHSPHYFAASSPTSPNALPPARKASPPSGLWSPAYASH 1887
PR SPG PH +S P +P A P PPS L SH
Sbjct: 156 PRPSPGAFPHL--SSEPRTPRAFPEPGSRVPPSRLECQQALSH 196
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 32.0 bits (71), Expect = 5.9
Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 3/109 (2%)
Query: 780 SSHRNPRLDLAAYDQEGRRFDNFSSLSIQWESTRPVLASIEPE--LPMQLVSQDDESGQK 837
+ RNP + N + S+ S PV ASI E LPM + S+ D SG
Sbjct: 2101 AKQRNPETETHGPQNTAASTLNTDASSVTGLSETPVGASISSEVPLPMAITSRSDVSGLT 2160
Query: 838 KLHGLQAILVHEASGTTAITAT-ATGYQESHLSSARTKQPHDPLVPLSA 885
L +S T +T T + ES +S K P +PL +
Sbjct: 2161 SESTANPSLGTASSAGTKLTRTISLPTSESLVSFRMNKDPWTVSIPLGS 2209
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 32.0 bits (71), Expect = 5.9
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 258 SIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPARPVAVLAQ-----DTSMVTA 312
SI +++ Q + P + + + + G + +P +P+ L + D S+ +
Sbjct: 402 SISQVEEEMLQDNTKSSAQPENLIPMWSSDIVTGEKNEPVKPLQPLIKEQKPKDQSLALS 461
Query: 313 LQLGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHPGDR 357
+L S +L H ++R+ G+S P S V G G H D+
Sbjct: 462 PKLECSGTILAHSNLRLLGSSDSPASASRVA--GITGVCHHAQDQ 504
>gi|30425394 hypothetical protein LOC128876 [Homo sapiens]
Length = 747
Score = 32.0 bits (71), Expect = 5.9
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 1829 HTVCTPRDLAVPAALTPRASPGHSPHYFAASSPTSP-NALPPARKASPPSGLWSP 1882
H +P LAV + L PR+ P H A + P N LP +++ SP G W P
Sbjct: 431 HNSTSPLTLAVGSPLLPRSRPLLQFHRGAPALSRFPENGLPGSQEPSPLRGRWVP 485
>gi|134142824 forkhead box D2 [Homo sapiens]
Length = 495
Score = 31.6 bits (70), Expect = 7.7
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 1837 LAVPAALTPRASPGHSPH------YFAASSPTSPNAL--PPARKASPPSG 1878
LA+PA P P PH FAA++ +P L PP R A+PP G
Sbjct: 272 LALPAYGAPPPGPAPHPHPHPHAFAFAAAAAAAPCQLSVPPGRAAAPPPG 321
>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
Length = 1499
Score = 31.6 bits (70), Expect = 7.7
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 1816 ALLAGTAVMIIAYHTVCTPR---DLAVPAALTPRASPGHSPHYFAASS--PTSPNALPPA 1870
A+L G A I+AYH PR D A TP P +P S P P PPA
Sbjct: 254 AVLQGRADSILAYHQQNVPRAKLDQAPKVPPTPEPLPLSTPSAGTPQSQPPPLPPPPPPA 313
Query: 1871 RKASPPS 1877
++PP+
Sbjct: 314 PGSAPPA 320
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,513,932
Number of Sequences: 37866
Number of extensions: 3137436
Number of successful extensions: 9411
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 9348
Number of HSP's gapped (non-prelim): 43
length of query: 1887
length of database: 18,247,518
effective HSP length: 117
effective length of query: 1770
effective length of database: 13,817,196
effective search space: 24456436920
effective search space used: 24456436920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.