Guide to the Human Genome
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Name: LOC100292626 Sequence: fasta or formatted (149aa) NCBI GI: 239753643
Description:

PREDICTED: similar to Putative uncharacterized protein C3orf46

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         12           3
 C cysteine            1.3          2           1
 D aspartate           3.4          5           1
 E glutamate           2.0          3           1
 F phenylalanine       2.7          4           1
 G glycine            12.1         18           2
 H histidine           3.4          5           2
 I isoleucine          7.4         11           2
 K lysine              4.0          6           1
 L leucine             8.7         13           3
 M methionine          3.4          5           1
 N asparagine          2.7          4           1
 P proline             6.0          9           2
 Q glutamine           5.4          8           1
 R arginine            3.4          5           1
 S serine              8.7         13           3
 T threonine           6.7         10           1
 V valine              8.1         12           2
 W tryptophan          2.0          3           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative uncharacterized prot... 
NUP210                0.442   nucleoporin 210 
NUP210L               0.212   nucleoporin 210kDa-like isoform 2 
NUP210L               0.212   nucleoporin 210kDa-like isoform 1 
SETD1B                0.025   SET domain containing 1B 
AKAP4                 0.014   A-kinase anchor protein 4 isoform 2 
AKAP4                 0.014   A-kinase anchor protein 4 isoform 1 
RAX                   0.011   retina and anterior neural fold homeobox 
MAP1S                 0.011   BPY2 interacting protein 1 
APC                   0.011   adenomatous polyposis coli 
APC                   0.011   adenomatous polyposis coli 
APC                   0.011   adenomatous polyposis coli 
VPS37C                0.007   vacuolar protein sorting 37C 
FKBP15                0.007   FK506 binding protein 15, 133kDa 
NFATC4                0.007   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.007   nuclear factor of activated T-cells, cytoplasmic, ca...
KIF18B                0.007   kinesin family member 18B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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