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Search of human proteins with 26051246
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|26051246 tumor necrosis factor ligand superfamily, member 13
isoform beta proprotein [Homo sapiens]
(234 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|26051246 tumor necrosis factor ligand superfamily, member 13 ... 475 e-134
gi|4507599 tumor necrosis factor ligand superfamily, member 13 i... 463 e-131
gi|26051248 tumor necrosis factor ligand superfamily, member 13 ... 456 e-128
gi|26051250 TNFSF12-TNFSF13 protein [Homo sapiens] 290 7e-79
gi|224548983 tumor necrosis factor superfamily, member 13b isofo... 90 1e-18
gi|5730097 tumor necrosis factor superfamily, member 13b isoform... 84 1e-16
gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens] 48 6e-06
gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens] 47 1e-05
gi|25952111 tumor necrosis factor alpha [Homo sapiens] 37 0.015
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens] 31 1.0
gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens] 31 1.0
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens] 31 1.0
gi|157694520 enoyl Coenzyme A hydratase domain containing 1 isof... 30 1.4
gi|157694516 enoyl Coenzyme A hydratase domain containing 1 isof... 30 1.4
gi|213417737 enoyl Coenzyme A hydratase domain containing 1 isof... 30 1.4
gi|239753489 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|239748065 PREDICTED: hypothetical protein XP_002346524 [Homo ... 30 1.4
gi|239741958 PREDICTED: hypothetical protein XP_002342362 [Homo ... 30 1.4
gi|223634014 solute carrier organic anion transporter family, me... 30 1.8
gi|223634012 solute carrier organic anion transporter family, me... 30 1.8
gi|6005820 solute carrier organic anion transporter family, memb... 30 1.8
gi|237681121 breast cancer 1, early onset isoform 3 [Homo sapiens] 30 1.8
gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] 30 1.8
gi|22538470 eomesodermin [Homo sapiens] 30 2.3
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 29 4.0
gi|217416374 hypothetical protein LOC92749 [Homo sapiens] 29 4.0
gi|4557329 fas ligand [Homo sapiens] 28 5.2
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 28 6.8
gi|21536468 AXL receptor tyrosine kinase isoform 2 [Homo sapiens] 28 6.8
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 28 6.8
>gi|26051246 tumor necrosis factor ligand superfamily, member 13
isoform beta proprotein [Homo sapiens]
Length = 234
Score = 475 bits (1223), Expect = e-134
Identities = 234/234 (100%), Positives = 234/234 (100%)
Query: 1 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 60
MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
Sbjct: 1 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 60
Query: 61 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKNDSDVTEV 120
EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKNDSDVTEV
Sbjct: 61 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKNDSDVTEV 120
Query: 121 MWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRC 180
MWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRC
Sbjct: 121 MWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRC 180
Query: 181 IRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL 234
IRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL
Sbjct: 181 IRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL 234
>gi|4507599 tumor necrosis factor ligand superfamily, member 13
isoform alpha proprotein [Homo sapiens]
Length = 250
Score = 463 bits (1191), Expect = e-131
Identities = 233/250 (93%), Positives = 234/250 (93%), Gaps = 16/250 (6%)
Query: 1 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 60
MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
Sbjct: 1 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 60
Query: 61 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQK-------- 112
EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQK
Sbjct: 61 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHL 120
Query: 113 --------NDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ 164
+DSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
Sbjct: 121 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ 180
Query: 165 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP 224
VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
Sbjct: 181 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP 240
Query: 225 HGTFLGFVKL 234
HGTFLGFVKL
Sbjct: 241 HGTFLGFVKL 250
>gi|26051248 tumor necrosis factor ligand superfamily, member 13
isoform gamma proprotein [Homo sapiens]
Length = 247
Score = 456 bits (1172), Expect = e-128
Identities = 229/246 (93%), Positives = 230/246 (93%), Gaps = 16/246 (6%)
Query: 1 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 60
MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
Sbjct: 1 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 60
Query: 61 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQK-------- 112
EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQK
Sbjct: 61 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHL 120
Query: 113 --------NDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ 164
+DSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
Sbjct: 121 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ 180
Query: 165 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP 224
VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
Sbjct: 181 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP 240
Query: 225 HGTFLG 230
HGTFLG
Sbjct: 241 HGTFLG 246
>gi|26051250 TNFSF12-TNFSF13 protein [Homo sapiens]
Length = 330
Score = 290 bits (742), Expect = 7e-79
Identities = 148/165 (89%), Positives = 149/165 (90%), Gaps = 16/165 (9%)
Query: 86 QSSDALEAWENGERSRKRRAVLTQKQK----------------NDSDVTEVMWQPALRRG 129
QSSDALEAWENGERSRKRRAVLTQKQK +DSDVTEVMWQPALRRG
Sbjct: 166 QSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRG 225
Query: 130 RGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPD 189
RGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPD
Sbjct: 226 RGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPD 285
Query: 190 RAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL 234
RAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL
Sbjct: 286 RAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL 330
>gi|224548983 tumor necrosis factor superfamily, member 13b isoform
2 [Homo sapiens]
Length = 266
Score = 90.1 bits (222), Expect = 1e-18
Identities = 65/199 (32%), Positives = 100/199 (50%), Gaps = 22/199 (11%)
Query: 52 QTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSS--DALEAWE--------NGERSR 101
Q +L SLR E+ P+ G G P L E + L+ +E + + SR
Sbjct: 73 QGDLASLRAELQGHHAEKLPA--GAGAPKAGLEEAPAVTAGLKIFEPPAPGEGNSSQNSR 130
Query: 102 KRRAVLTQKQKNDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFT 161
+RAV Q + T V W + +RG L+ + + +++ G + +Y QVL+ D T+
Sbjct: 131 NKRAV--QGPEETGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYA 188
Query: 162 MGQVVSRE------GQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPR 215
MG ++ R+ + TLFRCI++MP NSCYSAG+ L +GD L + IPR
Sbjct: 189 MGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPN--NSCYSAGIAKLEEGDELQLAIPR 246
Query: 216 ARAKLNLSPHGTFLGFVKL 234
A+++L TF G +KL
Sbjct: 247 ENAQISLDGDVTFFGALKL 265
>gi|5730097 tumor necrosis factor superfamily, member 13b isoform 1
[Homo sapiens]
Length = 285
Score = 83.6 bits (205), Expect = 1e-16
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 20/176 (11%)
Query: 67 GTGGPSQNGEGYPWQSLPEQS--SDALEAWENGERSRKRRAVLTQKQKNDSDVTEVMWQP 124
G G SQN PE++ D L+ + E ++ T V W
Sbjct: 121 GEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQKG----------SYTFVPWLL 170
Query: 125 ALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSRE------GQGRQETLF 178
+ +RG L+ + + +++ G + +Y QVL+ D T+ MG ++ R+ + TLF
Sbjct: 171 SFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLF 230
Query: 179 RCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL 234
RCI++MP NSCYSAG+ L +GD L + IPR A+++L TF G +KL
Sbjct: 231 RCIQNMPETLPN--NSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKL 284
>gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens]
Length = 391
Score = 48.1 bits (113), Expect = 6e-06
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 145 GVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLH 204
G Y +YSQV + FT S E ++ +C RS+ + YN+CY+AGV L
Sbjct: 299 GTYFIYSQVEVYYINFT--DFASYEVVVDEKPFLQCTRSIETGKTN-YNTCYTAGVCLLK 355
Query: 205 QGDILSVIIPRARAKLNLSPHGTFLGFVKL 234
++V + A +N+S H TF G ++L
Sbjct: 356 ARQKIAVKMVHADISINMSKHTTFFGAIRL 385
>gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens]
Length = 389
Score = 47.4 bits (111), Expect = 1e-05
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 145 GVYLLYSQVLFQDVT-FTMGQVVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHL 203
G Y +YSQV + + T F +VV E + +C RS+ + YN+CY+AGV L
Sbjct: 299 GTYFIYSQVYYINFTDFASYEVVVDE-----KPFLQCTRSIETGKTN-YNTCYTAGVCLL 352
Query: 204 HQGDILSVIIPRARAKLNLSPHGTFLGFVKL 234
++V + A +N+S H TF G ++L
Sbjct: 353 KARQKIAVKMVHADISINMSKHTTFFGAIRL 383
>gi|25952111 tumor necrosis factor alpha [Homo sapiens]
Length = 233
Score = 37.0 bits (84), Expect = 0.015
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 19/108 (17%)
Query: 127 RRGRGLQAQGYGVR-----IQDAGVYLLYSQVLFQD---------VTFTMGQV-VSREGQ 171
RR L A G +R + G+YL+YSQVLF+ +T T+ ++ VS + +
Sbjct: 107 RRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIAVSYQTK 166
Query: 172 GRQETLFR--CIRSMPSHPDRA--YNSCYSAGVFHLHQGDILSVIIPR 215
+ + C R P + Y Y GVF L +GD LS I R
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINR 214
>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
Length = 2003
Score = 30.8 bits (68), Expect = 1.0
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 33 LSWGAALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSSDALE 92
L+ G+ + A+ A L +Q E ++ RE + + +Q E W+ E+ + ALE
Sbjct: 1357 LALGSRVRAMEAEAAGLREQLEEEAAARERAGRELQTAQAQLSE---WRRRQEEEAGALE 1413
Query: 93 AWENGERSRKRRA-VLTQKQKNDSDVTEVMWQPALRRGR 130
A E R R A LTQ+ ++ + L RGR
Sbjct: 1414 AGEEARRRAAREAEALTQRLAEKTETVD-----RLERGR 1447
>gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]
Length = 1995
Score = 30.8 bits (68), Expect = 1.0
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 33 LSWGAALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSSDALE 92
L+ G+ + A+ A L +Q E ++ RE + + +Q E W+ E+ + ALE
Sbjct: 1349 LALGSRVRAMEAEAAGLREQLEEEAAARERAGRELQTAQAQLSE---WRRRQEEEAGALE 1405
Query: 93 AWENGERSRKRRA-VLTQKQKNDSDVTEVMWQPALRRGR 130
A E R R A LTQ+ ++ + L RGR
Sbjct: 1406 AGEEARRRAAREAEALTQRLAEKTETVD-----RLERGR 1439
>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
Length = 2036
Score = 30.8 bits (68), Expect = 1.0
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 33 LSWGAALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSSDALE 92
L+ G+ + A+ A L +Q E ++ RE + + +Q E W+ E+ + ALE
Sbjct: 1390 LALGSRVRAMEAEAAGLREQLEEEAAARERAGRELQTAQAQLSE---WRRRQEEEAGALE 1446
Query: 93 AWENGERSRKRRA-VLTQKQKNDSDVTEVMWQPALRRGR 130
A E R R A LTQ+ ++ + L RGR
Sbjct: 1447 AGEEARRRAAREAEALTQRLAEKTETVD-----RLERGR 1480
>gi|157694520 enoyl Coenzyme A hydratase domain containing 1 isoform
3 [Homo sapiens]
Length = 226
Score = 30.4 bits (67), Expect = 1.4
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 22 VREPALSVALWLSWGAALGA---VACAMALLTQQTELQSLRREVSRLQGTGGPSQ 73
+R P +SVAL W GA AC L+T +++++ + +E+ + GG ++
Sbjct: 63 MRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGTTR 117
>gi|157694516 enoyl Coenzyme A hydratase domain containing 1 isoform
1 [Homo sapiens]
Length = 301
Score = 30.4 bits (67), Expect = 1.4
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 22 VREPALSVALWLSWGAALGA---VACAMALLTQQTELQSLRREVSRLQGTGGPSQ 73
+R P +SVAL W GA AC L+T +++++ + +E+ + GG ++
Sbjct: 138 MRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGTTR 192
>gi|213417737 enoyl Coenzyme A hydratase domain containing 1 isoform
5 [Homo sapiens]
Length = 307
Score = 30.4 bits (67), Expect = 1.4
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 22 VREPALSVALWLSWGAALGA---VACAMALLTQQTELQSLRREVSRLQGTGGPSQ 73
+R P +SVAL W GA AC L+T +++++ + +E+ + GG ++
Sbjct: 144 MRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGTTR 198
>gi|239753489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 129 GRGLQAQGYGVRIQ---DAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMP 185
G G + GYGVR++ +AG ++ + Q+V GQ + G E + R +R P
Sbjct: 47 GHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEV----GQHAAERG---AEGVVRAVRPGP 99
Query: 186 SHP 188
HP
Sbjct: 100 GHP 102
>gi|239748065 PREDICTED: hypothetical protein XP_002346524 [Homo
sapiens]
Length = 104
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 129 GRGLQAQGYGVRIQ---DAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMP 185
G G + GYGVR++ +AG ++ + Q+V GQ + G E + R +R P
Sbjct: 47 GHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEV----GQHAAERG---AEGVVRAVRPGP 99
Query: 186 SHP 188
HP
Sbjct: 100 GHP 102
>gi|239741958 PREDICTED: hypothetical protein XP_002342362 [Homo
sapiens]
Length = 104
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 129 GRGLQAQGYGVRIQ---DAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMP 185
G G + GYGVR++ +AG ++ + Q+V GQ + G E + R +R P
Sbjct: 47 GHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEV----GQHAAERG---AEGVVRAVRPGP 99
Query: 186 SHP 188
HP
Sbjct: 100 GHP 102
>gi|223634014 solute carrier organic anion transporter family,
member 2B1 isoform 3 [Homo sapiens]
Length = 565
Score = 30.0 bits (66), Expect = 1.8
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 14 PPGNMGGPVREPALSVALWLSWGAALGAVACA--------MALLTQQTELQSLRREVSRL 65
P G + +++P A WL + A GAVA A + ++ ELQ RR+V L
Sbjct: 115 PEGGISLTIKDPRWVGAWWLGFLIAAGAVALAAIPYFFFPKEMPKEKRELQ-FRRKV--L 171
Query: 66 QGTGGPSQNGEGYPWQSLPEQSS 88
T P++ G+ P + P +S+
Sbjct: 172 AVTDSPARKGKDSPSKQSPGEST 194
>gi|223634012 solute carrier organic anion transporter family,
member 2B1 isoform 2 [Homo sapiens]
Length = 687
Score = 30.0 bits (66), Expect = 1.8
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 14 PPGNMGGPVREPALSVALWLSWGAALGAVACA--------MALLTQQTELQSLRREVSRL 65
P G + +++P A WL + A GAVA A + ++ ELQ RR+V L
Sbjct: 237 PEGGISLTIKDPRWVGAWWLGFLIAAGAVALAAIPYFFFPKEMPKEKRELQ-FRRKV--L 293
Query: 66 QGTGGPSQNGEGYPWQSLPEQSS 88
T P++ G+ P + P +S+
Sbjct: 294 AVTDSPARKGKDSPSKQSPGEST 316
>gi|6005820 solute carrier organic anion transporter family, member
2B1 isoform 1 [Homo sapiens]
Length = 709
Score = 30.0 bits (66), Expect = 1.8
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 14 PPGNMGGPVREPALSVALWLSWGAALGAVACA--------MALLTQQTELQSLRREVSRL 65
P G + +++P A WL + A GAVA A + ++ ELQ RR+V L
Sbjct: 259 PEGGISLTIKDPRWVGAWWLGFLIAAGAVALAAIPYFFFPKEMPKEKRELQ-FRRKV--L 315
Query: 66 QGTGGPSQNGEGYPWQSLPEQSS 88
T P++ G+ P + P +S+
Sbjct: 316 AVTDSPARKGKDSPSKQSPGEST 338
>gi|237681121 breast cancer 1, early onset isoform 3 [Homo sapiens]
Length = 1816
Score = 30.0 bits (66), Expect = 1.8
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 50 TQQTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSSD--ALEAWENGERSRKRRAVL 107
T Q L L++E++ L+ Q+G P S P SD ALE N E+S +AVL
Sbjct: 1352 TMQHNLIKLQQEMAELEAV--LEQHGS-QPSNSYPSIISDSSALEDLRNPEQSTSEKAVL 1408
Query: 108 TQKQKNDSDVTE 119
T ++ ++ +++
Sbjct: 1409 TSQKSSEYPISQ 1420
>gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens]
Length = 1863
Score = 30.0 bits (66), Expect = 1.8
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 50 TQQTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSSD--ALEAWENGERSRKRRAVL 107
T Q L L++E++ L+ Q+G P S P SD ALE N E+S +AVL
Sbjct: 1399 TMQHNLIKLQQEMAELEAV--LEQHGS-QPSNSYPSIISDSSALEDLRNPEQSTSEKAVL 1455
Query: 108 TQKQKNDSDVTE 119
T ++ ++ +++
Sbjct: 1456 TSQKSSEYPISQ 1467
>gi|22538470 eomesodermin [Homo sapiens]
Length = 686
Score = 29.6 bits (65), Expect = 2.3
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 3 ASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRREV 62
AS+ + P P G G P E L A AA A A A A T + + SL E
Sbjct: 90 ASAAAVAKPGPPDGRKGSPCGEEELPSA------AAAAAAAAAAAAATARYSMDSLSSER 143
Query: 63 SRLQGTGGPSQNGEGYPWQSLPEQSS 88
LQ + GP + P P Q++
Sbjct: 144 YYLQ-SPGPQGSELAAPCSLFPYQAA 168
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 28.9 bits (63), Expect = 4.0
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 25 PALSVALWLSWGAALGAVACAMALLTQQTELQSLRREVS 63
PA AL +S A GAVA L+QQTE +L S
Sbjct: 373 PAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAAS 411
>gi|217416374 hypothetical protein LOC92749 [Homo sapiens]
Length = 740
Score = 28.9 bits (63), Expect = 4.0
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 49 LTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENG-ERSRKRRAVL 107
L +QTE++ +E S ++G + PW P LEA+ G ++ R RA L
Sbjct: 588 LAEQTEMEG-EKEESLVEGEKEEEEETPPSPWVIHPNDVLKILEAFVMGLKKPRDSRAPL 646
Query: 108 -TQKQKNDSDVTEVMWQ 123
QK D+ WQ
Sbjct: 647 RVQKNVRDNSKDSEYWQ 663
>gi|4557329 fas ligand [Homo sapiens]
Length = 281
Score = 28.5 bits (62), Expect = 5.2
Identities = 54/239 (22%), Positives = 84/239 (35%), Gaps = 21/239 (8%)
Query: 2 PASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRRE 61
P P P P G L V ++ A +G L Q EL LR
Sbjct: 58 PPPPPLPPLPLPPLKKRGNHSTGLCLLVMFFMVLVALVGLGLGMFQLFHLQKELAELRES 117
Query: 62 VSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKNDSDVTEVM 121
S++ T + G+P S P + + ++ A LT K + S E
Sbjct: 118 TSQMH-TASSLEKQIGHP--SPPPEKKEL-----------RKVAHLTGKSNSRSMPLEWE 163
Query: 122 WQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVT---FTMGQVVSREGQGRQETLF 178
+ G++ + G+ I + G+Y +YS+V F+ + + V + L
Sbjct: 164 DTYGIVLLSGVKYKKGGLVINETGLYFVYSKVYFRGQSCNNLPLSHKVYMRNSKYPQDLV 223
Query: 179 RCIRSMPSHPDRAY---NSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL 234
M S+ S Y VF+L D L V + + +N TF G KL
Sbjct: 224 MMEGKMMSYCTTGQMWARSSYLGAVFNLTSADHLYVNVSEL-SLVNFEESQTFFGLYKL 281
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 28.1 bits (61), Expect = 6.8
Identities = 12/72 (16%), Positives = 32/72 (44%)
Query: 52 QTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQ 111
Q + + +R + +++ + E W+ + WE E+ R++ ++ +K+
Sbjct: 317 QEQEEKIREQEEKIREQEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEKMRRQEEMMWEKE 376
Query: 112 KNDSDVTEVMWQ 123
+ E+MW+
Sbjct: 377 EKMRRQEEMMWE 388
>gi|21536468 AXL receptor tyrosine kinase isoform 2 [Homo sapiens]
Length = 885
Score = 28.1 bits (61), Expect = 6.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 21 PVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRREVSR 64
PV+EP+ W W LGAV A +L L R++ +R
Sbjct: 428 PVKEPSTPAFSWPWWYVLLGAVVAAACVLILALFLVHRRKKETR 471
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 28.1 bits (61), Expect = 6.8
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 83 LPEQSSDALEAWENGER-SRKRRAVLTQKQKNDSDVTEVMWQPALRRGRGLQAQGYGV 139
L + LE + E+ RK+ ++ +K KN D +E +P +R+ RG + + Y +
Sbjct: 83 LTKMEQQQLEEQKKKEKLERKKESLKVKKGKNSIDASEE--KPVMRKKRGREDESYNI 138
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,036,781
Number of Sequences: 37866
Number of extensions: 459456
Number of successful extensions: 2093
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2052
Number of HSP's gapped (non-prelim): 52
length of query: 234
length of database: 18,247,518
effective HSP length: 99
effective length of query: 135
effective length of database: 14,498,784
effective search space: 1957335840
effective search space used: 1957335840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.