Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: BDNF Sequence: fasta or formatted (247aa) NCBI GI: 25306253
Description:

brain-derived neurotrophic factor isoform a preproprotein

Referenced in:

Neurons
Receptor Tyrosine Kinases
TNF and Related Signals

Other entries for this name:
alt mRNA [247aa] brain-derived neurotrophic factor isoform a preproprotein
alt mRNA [247aa] brain-derived neurotrophic factor isoform a preproprotein
alt mRNA [247aa] brain-derived neurotrophic factor isoform a preproprotein
alt mRNA [247aa] brain-derived neurotrophic factor isoform a preproprotein
alt prot [276aa] brain-derived neurotrophic factor isoform d preproprotein
alt prot [329aa] brain-derived neurotrophic factor isoform e
alt mRNA [247aa] brain-derived neurotrophic factor isoform a preproprotein
alt mRNA [247aa] brain-derived neurotrophic factor isoform a preproprotein
alt mRNA [247aa] brain-derived neurotrophic factor isoform a preproprotein
alt mRNA [247aa] brain-derived neurotrophic factor isoform a preproprotein
alt mRNA [247aa] brain-derived neurotrophic factor isoform a preproprotein
alt mRNA [247aa] brain-derived neurotrophic factor isoform a preproprotein
alt prot [255aa] brain-derived neurotrophic factor isoform b preproprotein
alt mRNA [247aa] brain-derived neurotrophic factor isoform a preproprotein
alt prot [262aa] brain-derived neurotrophic factor isoform c preproprotein
alt mRNA [247aa] brain-derived neurotrophic factor isoform a preproprotein
alt mRNA [247aa] brain-derived neurotrophic factor isoform a preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         14           2
 C cysteine            2.8          7           1
 D aspartate           5.3         13           1
 E glutamate           6.5         16           2
 F phenylalanine       2.4          6           1
 G glycine             7.3         18           2
 H histidine           1.6          4           1
 I isoleucine          4.0         10           1
 K lysine              6.9         17           2
 L leucine             8.5         21           2
 M methionine          4.0         10           1
 N asparagine          3.6          9           2
 P proline             4.0         10           2
 Q glutamine           2.8          7           1
 R arginine            7.7         19           2
 S serine              7.3         18           2
 T threonine           7.7         19           2
 V valine              6.9         17           1
 W tryptophan          1.2          3           1
 Y tyrosine            3.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   brain-derived neurotrophic factor isoform a prepropr... 
BDNF                  1.000   brain-derived neurotrophic factor isoform a preprop...
BDNF                  1.000   brain-derived neurotrophic factor isoform a preprop...
BDNF                  1.000   brain-derived neurotrophic factor isoform a preprop...
BDNF                  1.000   brain-derived neurotrophic factor isoform a preprop...
BDNF                  1.000   brain-derived neurotrophic factor isoform a preprop...
BDNF                  1.000   brain-derived neurotrophic factor isoform a preprop...
BDNF                  1.000   brain-derived neurotrophic factor isoform e 
BDNF                  1.000   brain-derived neurotrophic factor isoform d preprop...
BDNF                  1.000   brain-derived neurotrophic factor isoform a preprop...
BDNF                  1.000   brain-derived neurotrophic factor isoform a preprop...
BDNF                  1.000   brain-derived neurotrophic factor isoform a preprop...
BDNF                  1.000   brain-derived neurotrophic factor isoform a preprop...
BDNF                  1.000   brain-derived neurotrophic factor isoform a prepropr...
BDNF                  1.000   brain-derived neurotrophic factor isoform c prepropr...
BDNF                  1.000   brain-derived neurotrophic factor isoform a prepropr...
BDNF                  1.000   brain-derived neurotrophic factor isoform a prepropr...
BDNF                  1.000   brain-derived neurotrophic factor isoform b prepropr...
NTF3                  0.307   neurotrophin 3 isoform 1 preproprotein 
NTF3                  0.307   neurotrophin 3 isoform 2 preproprotein 
NTF4                  0.278   neurotrophin 5 preproprotein 
NGF                   0.238   nerve growth factor, beta polypeptide precursor [Hom...
THPO                  0.013   thrombopoietin precursor 
ISG20L2               0.008   interferon stimulated exonuclease gene 20kDa-like 2 ...
VWA3A                 0.008   von Willebrand factor A domain containing 3A 
FAM185A               0.006   hypothetical protein LOC222234 isoform 1 
ZNF18                 0.006   zinc finger protein 18 
PHF14                 0.006   PHD finger protein 14 isoform 2 
TTC3                  0.006   tetratricopeptide repeat domain 3 
TTC3                  0.006   tetratricopeptide repeat domain 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press