Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NTF4 Sequence: fasta or formatted (210aa) NCBI GI: 5453808
Description:

neurotrophin 5 preproprotein

Referenced in:

Neurons
Receptor Tyrosine Kinases
TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         24           2
 C cysteine            3.3          7           1
 D aspartate           3.8          8           1
 E glutamate           6.2         13           2
 F phenylalanine       2.9          6           2
 G glycine            10.5         22           4
 H histidine           0.5          1           1
 I isoleucine          1.9          4           1
 K lysine              1.4          3           1
 L leucine            11.4         24           3
 M methionine          0.5          1           1
 N asparagine          1.0          2           1
 P proline             9.5         20           3
 Q glutamine           1.9          4           1
 R arginine           11.0         23           2
 S serine              7.6         16           1
 T threonine           4.3          9           1
 V valine              7.6         16           2
 W tryptophan          2.4          5           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neurotrophin 5 preproprotein 
NTF3                  0.350   neurotrophin 3 isoform 1 preproprotein 
NTF3                  0.350   neurotrophin 3 isoform 2 preproprotein 
BDNF                  0.328   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.328   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.328   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.328   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.328   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.328   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.328   brain-derived neurotrophic factor isoform e 
BDNF                  0.328   brain-derived neurotrophic factor isoform d preprop...
BDNF                  0.328   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.328   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.328   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.328   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.328   brain-derived neurotrophic factor isoform a prepropr...
BDNF                  0.328   brain-derived neurotrophic factor isoform c prepropr...
BDNF                  0.328   brain-derived neurotrophic factor isoform a prepropr...
BDNF                  0.328   brain-derived neurotrophic factor isoform a prepropr...
BDNF                  0.328   brain-derived neurotrophic factor isoform a prepropr...
BDNF                  0.328   brain-derived neurotrophic factor isoform b prepropr...
NGF                   0.256   nerve growth factor, beta polypeptide precursor [Hom...
APOB48R               0.025   apolipoprotein B48 receptor 
NHSL1                 0.022   NHS-like 1 
SETD1B                0.020   SET domain containing 1B 
NEUROG2               0.020   neurogenin 2 
LOC100292686          0.017   PREDICTED: hypothetical protein 
LOC100287098          0.017   PREDICTED: hypothetical protein 
LOC100287098          0.017   PREDICTED: hypothetical protein XP_002342923 
TTMA                  0.017   hypothetical protein LOC645369 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press