Guide to the Human Genome
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Name: NGF Sequence: fasta or formatted (241aa) NCBI GI: 70995319
Description:

nerve growth factor, beta polypeptide precursor

Referenced in:

Neurons
Receptor Tyrosine Kinases
TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         24           3
 C cysteine            2.5          6           1
 D aspartate           5.4         13           1
 E glutamate           3.3          8           1
 F phenylalanine       5.4         13           2
 G glycine             5.0         12           2
 H histidine           3.7          9           1
 I isoleucine          5.0         12           1
 K lysine              5.4         13           2
 L leucine             5.4         13           1
 M methionine          1.7          4           1
 N asparagine          3.3          8           2
 P proline             5.0         12           2
 Q glutamine           3.3          8           1
 R arginine            9.1         22           2
 S serine              7.9         19           3
 T threonine           8.3         20           3
 V valine              7.5         18           1
 W tryptophan          1.7          4           1
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nerve growth factor, beta polypeptide precursor [Hom... 
NTF3                  0.338   neurotrophin 3 isoform 1 preproprotein 
NTF3                  0.338   neurotrophin 3 isoform 2 preproprotein 
BDNF                  0.244   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.244   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.244   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.244   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.244   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.244   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.244   brain-derived neurotrophic factor isoform e 
BDNF                  0.244   brain-derived neurotrophic factor isoform d preprop...
BDNF                  0.244   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.244   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.244   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.244   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.244   brain-derived neurotrophic factor isoform a prepropr...
BDNF                  0.244   brain-derived neurotrophic factor isoform c prepropr...
BDNF                  0.244   brain-derived neurotrophic factor isoform a prepropr...
BDNF                  0.244   brain-derived neurotrophic factor isoform a prepropr...
BDNF                  0.244   brain-derived neurotrophic factor isoform a prepropr...
BDNF                  0.244   brain-derived neurotrophic factor isoform b prepropr...
NTF4                  0.222   neurotrophin 5 preproprotein 
CLK4                  0.011   CDC-like kinase 4 
EXOC7                 0.009   exocyst complex component 7 isoform 3 
FLII                  0.006   flightless I homolog 
LOC100133280          0.006   PREDICTED: similar to Putative POM121-like protein ...
FLJ37078              0.006   hypothetical protein LOC222183 
CCDC149               0.006   coiled-coil domain containing 149 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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