Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 24762248
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24762248 integrin beta 1 binding protein 3 [Homo sapiens]
(230 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24762248 integrin beta 1 binding protein 3 [Homo sapiens] 476 e-135
gi|8923530 nicotinamide riboside kinase 1 isoform 1 [Homo sapiens] 216 1e-56
gi|189027124 nicotinamide riboside kinase 1 isoform 2 [Homo sapi... 167 9e-42
gi|57863312 uridine-cytidine kinase 1-like 1 [Homo sapiens] 37 0.011
gi|7656971 phosphonoformate immuno-associated protein 5 isoform ... 31 0.78
gi|148839294 Ca2+-dependent activator protein for secretion 2 is... 30 1.7
gi|148839284 Ca2+-dependent activator protein for secretion 2 is... 30 1.7
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 30 1.7
gi|119226227 NEDD4 binding protein 2-like 1 isoform 2 [Homo sapi... 30 1.7
gi|119226224 NEDD4 binding protein 2-like 1 isoform 1 [Homo sapi... 30 1.7
gi|33519440 cyclin B1 interacting protein 1 isoform 4 [Homo sapi... 30 2.3
gi|33519438 cyclin B1 interacting protein 1 isoform 3 [Homo sapi... 30 2.3
gi|33519436 cyclin B1 interacting protein 1 isoform 2 [Homo sapi... 30 2.3
gi|116812640 cyclin B1 interacting protein 1 isoform 1 [Homo sap... 30 2.3
gi|13899253 uridine-cytidine kinase 1 isoform a [Homo sapiens] 29 3.0
gi|209863022 uridine-cytidine kinase 1 isoform b [Homo sapiens] 29 3.9
gi|110815815 centlein isoform 1 [Homo sapiens] 29 3.9
gi|116805330 small conductance calcium-activated potassium chann... 28 5.0
gi|241982689 ADP-ribosylation factor-like 13 isoform b [Homo sap... 28 5.0
gi|241982687 ADP-ribosylation factor-like 13 isoform a [Homo sap... 28 5.0
gi|124248533 ADP-ribosylation factor-like 13 isoform a [Homo sap... 28 5.0
gi|239757169 PREDICTED: hypothetical protein [Homo sapiens] 28 5.0
gi|239751681 PREDICTED: hypothetical protein XP_002347965 [Homo ... 28 5.0
gi|239749462 PREDICTED: similar to ubiquitin protein ligase E3 c... 28 5.0
gi|113420453 PREDICTED: similar to ubiquitin protein ligase E3 c... 28 5.0
gi|239746185 PREDICTED: hypothetical protein XP_002343659 [Homo ... 28 5.0
gi|15147337 ubiquitin protein ligase E3 component n-recognin 5 [... 28 5.0
gi|4504567 interferon regulatory factor 8 [Homo sapiens] 28 6.6
gi|59814247 budding uninhibited by benzimidazoles 1 beta [Homo s... 28 6.6
gi|150170670 piccolo isoform 2 [Homo sapiens] 28 6.6
>gi|24762248 integrin beta 1 binding protein 3 [Homo sapiens]
Length = 230
Score = 476 bits (1225), Expect = e-135
Identities = 230/230 (100%), Positives = 230/230 (100%)
Query: 1 MKLIVGIGGMTNGGKTTLTNSLLRALPNCCVIHQDDFFKPQDQIAVGEDGFKQWDVLESL 60
MKLIVGIGGMTNGGKTTLTNSLLRALPNCCVIHQDDFFKPQDQIAVGEDGFKQWDVLESL
Sbjct: 1 MKLIVGIGGMTNGGKTTLTNSLLRALPNCCVIHQDDFFKPQDQIAVGEDGFKQWDVLESL 60
Query: 61 DMEAMLDTVQAWLSSPQKFARAHGVSVQPEASDTHILLLEGFLLYSYKPLVDLYSRRYFL 120
DMEAMLDTVQAWLSSPQKFARAHGVSVQPEASDTHILLLEGFLLYSYKPLVDLYSRRYFL
Sbjct: 61 DMEAMLDTVQAWLSSPQKFARAHGVSVQPEASDTHILLLEGFLLYSYKPLVDLYSRRYFL 120
Query: 121 TVPYEECKWRRSTRNYTVPDPPGLFDGHVWPMYQKYRQEMEANGVEVVYLDGMKSREELF 180
TVPYEECKWRRSTRNYTVPDPPGLFDGHVWPMYQKYRQEMEANGVEVVYLDGMKSREELF
Sbjct: 121 TVPYEECKWRRSTRNYTVPDPPGLFDGHVWPMYQKYRQEMEANGVEVVYLDGMKSREELF 180
Query: 181 REVLEDIQNSLLNRSQESAPSPARPARTQGPGRGCGHRTARPAASQQDSM 230
REVLEDIQNSLLNRSQESAPSPARPARTQGPGRGCGHRTARPAASQQDSM
Sbjct: 181 REVLEDIQNSLLNRSQESAPSPARPARTQGPGRGCGHRTARPAASQQDSM 230
>gi|8923530 nicotinamide riboside kinase 1 isoform 1 [Homo sapiens]
Length = 199
Score = 216 bits (551), Expect = 1e-56
Identities = 108/189 (57%), Positives = 135/189 (71%), Gaps = 5/189 (2%)
Query: 4 IVGIGGMTNGGKTTLTNSLLRALPNCCVIHQDDFFKPQDQIAVGEDGFKQWDVLESLDME 63
I+GI G+TN GKTTL +L + LPNC VI QDDFFKP+ +I ++GF Q+DVLE+L+ME
Sbjct: 5 IIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNME 64
Query: 64 AMLDTVQAWLSSPQKFARAHGVSVQPE-ASDTHILLLEGFLLYSYKPLVDLYSRRYFLTV 122
M+ + W+ S AR VS E A + IL++EGFLL++YKPL +++R YFLT+
Sbjct: 65 KMMSAISCWMES----ARHSVVSTDQESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTI 120
Query: 123 PYEECKWRRSTRNYTVPDPPGLFDGHVWPMYQKYRQEMEANGVEVVYLDGMKSREELFRE 182
PYEECK RRSTR Y PD PG FDGHVWPMY KYRQEM+ EVVYLDG KS E+LF +
Sbjct: 121 PYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQ 180
Query: 183 VLEDIQNSL 191
V ED+ L
Sbjct: 181 VYEDLIQEL 189
>gi|189027124 nicotinamide riboside kinase 1 isoform 2 [Homo
sapiens]
Length = 175
Score = 167 bits (422), Expect = 9e-42
Identities = 91/189 (48%), Positives = 115/189 (60%), Gaps = 29/189 (15%)
Query: 4 IVGIGGMTNGGKTTLTNSLLRALPNCCVIHQDDFFKPQDQIAVGEDGFKQWDVLESLDME 63
I+GI G+TN GKTTL +L + LPNC VI QDDFFKP+ +I ++GF Q+DVLE+L+ME
Sbjct: 5 IIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNME 64
Query: 64 AMLDTVQAWLSSPQKFARAHGVSV-QPEASDTHILLLEGFLLYSYKPLVDLYSRRYFLTV 122
M+ + W+ S AR VS Q A + IL++EGFLL++Y
Sbjct: 65 KMMSAISCWMES----ARHSVVSTDQESAEEIPILIIEGFLLFNY--------------- 105
Query: 123 PYEECKWRRSTRNYTVPDPPGLFDGHVWPMYQKYRQEMEANGVEVVYLDGMKSREELFRE 182
+TR Y PD PG FDGHVWPMY KYRQEM+ EVVYLDG KS E+LF +
Sbjct: 106 ---------NTRVYQPPDSPGYFDGHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQ 156
Query: 183 VLEDIQNSL 191
V ED+ L
Sbjct: 157 VYEDLIQEL 165
>gi|57863312 uridine-cytidine kinase 1-like 1 [Homo sapiens]
Length = 548
Score = 37.4 bits (85), Expect = 0.011
Identities = 26/127 (20%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 5 VGIGGMTNGGKTTLTNSLLRAL--PNCCVIHQDDFFK---PQDQIAVGEDGFKQWDVLES 59
+G+GG + GKTT+ ++ AL P ++ D F+K Q Q + F +D ++
Sbjct: 101 IGLGGGSASGKTTVARMIIEALDVPWVVLLSMDSFYKVLTEQQQEQAAHNNF-NFDHPDA 159
Query: 60 LDMEAMLDTVQAWLSSPQKFARAHGVSVQPEASD------THILLLEGFLLYSYKPLVDL 113
D + ++ T++ + + D ++++ EG + ++ K L++L
Sbjct: 160 FDFDLIISTLKKLKQGKSVKVPIYDFTTHSRKKDWKTLYGANVIIFEGIMAFADKTLLEL 219
Query: 114 YSRRYFL 120
+ F+
Sbjct: 220 LDMKIFV 226
>gi|7656971 phosphonoformate immuno-associated protein 5 isoform 2
[Homo sapiens]
Length = 583
Score = 31.2 bits (69), Expect = 0.78
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 2 KLIVGIGGMTNGGKTTLTNSLLRALPNCCVIHQDDFFKPQD 42
KL++ + G+ GKTTL+ LL + V DD+F QD
Sbjct: 402 KLLILLRGLPGSGKTTLSRILLGQNRDGIVFSTDDYFHHQD 442
>gi|148839294 Ca2+-dependent activator protein for secretion 2
isoform a [Homo sapiens]
Length = 1296
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 170 LDGMKSREELFREVLEDIQNSLL--NRSQESAPSPARPARTQGPGRGCGHRTAR 221
LD S EE + E+ ++ L+ SQ + P+P R R PGR G AR
Sbjct: 2 LDPSSSEEESDEGLEEESRDVLVAAGSSQRAPPAPTREGRRDAPGRAGGGGAAR 55
>gi|148839284 Ca2+-dependent activator protein for secretion 2
isoform b [Homo sapiens]
Length = 1255
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 170 LDGMKSREELFREVLEDIQNSLL--NRSQESAPSPARPARTQGPGRGCGHRTAR 221
LD S EE + E+ ++ L+ SQ + P+P R R PGR G AR
Sbjct: 2 LDPSSSEEESDEGLEEESRDVLVAAGSSQRAPPAPTREGRRDAPGRAGGGGAAR 55
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 188 QNSLLNRSQESAPSP--ARPARTQGPGRGCGHRTARPAASQ 226
QNS+ R +++PSP ARPAR R GH T+ A S+
Sbjct: 282 QNSVRQRPPDASPSPGSARPAREPSLERVGGHPTSPAALSR 322
>gi|119226227 NEDD4 binding protein 2-like 1 isoform 2 [Homo
sapiens]
Length = 173
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 9 GMTNGGKTTLTNSLLRALPNCCVIHQDDFFKPQD 42
G+ GKTTL L P + DDFF +D
Sbjct: 49 GLPGSGKTTLARQLQHDFPRALIFSTDDFFFRED 82
>gi|119226224 NEDD4 binding protein 2-like 1 isoform 1 [Homo
sapiens]
Length = 243
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 9 GMTNGGKTTLTNSLLRALPNCCVIHQDDFFKPQD 42
G+ GKTTL L P + DDFF +D
Sbjct: 49 GLPGSGKTTLARQLQHDFPRALIFSTDDFFFRED 82
>gi|33519440 cyclin B1 interacting protein 1 isoform 4 [Homo
sapiens]
Length = 277
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 146 DGHVWPMYQKYRQEMEANGVEVVYLDG----MKSREELFREVLEDIQNSLLNRSQE 197
+GH+ M + Y Q++++ VE+ + G MK E +++ DI L+ R+++
Sbjct: 115 EGHLKQMEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQ 170
>gi|33519438 cyclin B1 interacting protein 1 isoform 3 [Homo
sapiens]
Length = 277
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 146 DGHVWPMYQKYRQEMEANGVEVVYLDG----MKSREELFREVLEDIQNSLLNRSQE 197
+GH+ M + Y Q++++ VE+ + G MK E +++ DI L+ R+++
Sbjct: 115 EGHLKQMEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQ 170
>gi|33519436 cyclin B1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 277
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 146 DGHVWPMYQKYRQEMEANGVEVVYLDG----MKSREELFREVLEDIQNSLLNRSQE 197
+GH+ M + Y Q++++ VE+ + G MK E +++ DI L+ R+++
Sbjct: 115 EGHLKQMEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQ 170
>gi|116812640 cyclin B1 interacting protein 1 isoform 1 [Homo
sapiens]
Length = 277
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 146 DGHVWPMYQKYRQEMEANGVEVVYLDG----MKSREELFREVLEDIQNSLLNRSQE 197
+GH+ M + Y Q++++ VE+ + G MK E +++ DI L+ R+++
Sbjct: 115 EGHLKQMEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQ 170
>gi|13899253 uridine-cytidine kinase 1 isoform a [Homo sapiens]
Length = 277
Score = 29.3 bits (64), Expect = 3.0
Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 4 IVGIGGMTNGGKTTLTNSLLRAL---------PNCCVIHQDDFFK--PQDQIAVGEDGFK 52
++G+ G T GK+T+ ++ L ++ QD F+K +Q A G
Sbjct: 25 LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQY 84
Query: 53 QWDVLESLDMEAMLDTVQAWLSSPQKFARAHGVSVQPEASDT------HILLLEGFLLYS 106
+D ++ D + M T++ + + +T ++L EG L++
Sbjct: 85 NFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFY 144
Query: 107 YKPLVDLYSRRYFLTVPYEECKWRRSTRN 135
+ + D++ R F+ + RR R+
Sbjct: 145 SQEIRDMFHLRLFVDTDSDVRLSRRVLRD 173
>gi|209863022 uridine-cytidine kinase 1 isoform b [Homo sapiens]
Length = 201
Score = 28.9 bits (63), Expect = 3.9
Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 17/134 (12%)
Query: 4 IVGIGGMTNGGKTTLTNSLLRAL---------PNCCVIHQDDFFK--PQDQIAVGEDGFK 52
++G+ G T GK+T+ ++ L ++ QD F+K +Q A G
Sbjct: 25 LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQY 84
Query: 53 QWDVLESLDMEAMLDTVQAWLSSPQKFARAHGVSVQPEASDT------HILLLEGFLLYS 106
+D ++ D + M T++ + + +T ++L EG L++
Sbjct: 85 NFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFY 144
Query: 107 YKPLVDLYSRRYFL 120
+ + D++ R F+
Sbjct: 145 SQEIRDMFHLRLFV 158
>gi|110815815 centlein isoform 1 [Homo sapiens]
Length = 1406
Score = 28.9 bits (63), Expect = 3.9
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 153 YQKYRQEMEANGVEVVYLDGMKSREELFREVLEDIQNSLLNRSQESAPSPARPARTQG 210
YQK E+ + + KS E + R+ + ++Q+ LL + QE+A + +QG
Sbjct: 380 YQKLYNELH------ICFETTKSNEAMLRQSVTNLQDQLLQKEQENAKLKEKLQESQG 431
>gi|116805330 small conductance calcium-activated potassium channel
protein 3 isoform a [Homo sapiens]
Length = 731
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 188 QNSLLNRSQESAPSPARPARTQGPGRGCGHRTARPAASQQDS 229
Q S LN + T GPG G HR A P ++DS
Sbjct: 126 QGSQLNLNDHLLGHSPSSTATSGPGGGSRHRQASPLVHRRDS 167
>gi|241982689 ADP-ribosylation factor-like 13 isoform b [Homo
sapiens]
Length = 256
Score = 28.5 bits (62), Expect = 5.0
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 5 VGIGGMTNGGKTTLTNSLLRALPNCCVIHQDDFFKPQDQIAVGEDGFKQWDVLESLDMEA 64
+ I G+ N GKT L + + LP+ + D + + D ++ L D+
Sbjct: 24 IPIIGLNNSGKTVLVEAFQKLLPS-----KTDHCMKSELTTLLLDEYE----LSIYDLNG 74
Query: 65 MLDTVQAWLSSPQKFARAHGVSVQPEASD 93
L +AW P +A+AHG+ ++SD
Sbjct: 75 DLKGREAW---PNYYAQAHGLVFVLDSSD 100
>gi|241982687 ADP-ribosylation factor-like 13 isoform a [Homo
sapiens]
Length = 290
Score = 28.5 bits (62), Expect = 5.0
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 5 VGIGGMTNGGKTTLTNSLLRALPNCCVIHQDDFFKPQDQIAVGEDGFKQWDVLESLDMEA 64
+ I G+ N GKT L + + LP+ + D + + D ++ L D+
Sbjct: 24 IPIIGLNNSGKTVLVEAFQKLLPS-----KTDHCMKSELTTLLLDEYE----LSIYDLNG 74
Query: 65 MLDTVQAWLSSPQKFARAHGVSVQPEASD 93
L +AW P +A+AHG+ ++SD
Sbjct: 75 DLKGREAW---PNYYAQAHGLVFVLDSSD 100
>gi|124248533 ADP-ribosylation factor-like 13 isoform a [Homo
sapiens]
Length = 290
Score = 28.5 bits (62), Expect = 5.0
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 5 VGIGGMTNGGKTTLTNSLLRALPNCCVIHQDDFFKPQDQIAVGEDGFKQWDVLESLDMEA 64
+ I G+ N GKT L + + LP+ + D + + D ++ L D+
Sbjct: 24 IPIIGLNNSGKTVLVEAFQKLLPS-----KTDHCMKSELTTLLLDEYE----LSIYDLNG 74
Query: 65 MLDTVQAWLSSPQKFARAHGVSVQPEASD 93
L +AW P +A+AHG+ ++SD
Sbjct: 75 DLKGREAW---PNYYAQAHGLVFVLDSSD 100
>gi|239757169 PREDICTED: hypothetical protein [Homo sapiens]
Length = 849
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 166 EVVYLDGMKSREELFREVLEDIQNSLLNRSQESAPSPARPARTQGPGRGCGHR-TARPAA 224
E V G++ E V+E I Q++ P P Q RGC HR A+P
Sbjct: 284 EPVLFPGLRETPEAAAVVIEGI-----GPGQDAGQEPGGPDHQQEKPRGCCHRPEAQPRQ 338
Query: 225 SQQ 227
+QQ
Sbjct: 339 AQQ 341
>gi|239751681 PREDICTED: hypothetical protein XP_002347965 [Homo
sapiens]
Length = 849
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 166 EVVYLDGMKSREELFREVLEDIQNSLLNRSQESAPSPARPARTQGPGRGCGHR-TARPAA 224
E V G++ E V+E I Q++ P P Q RGC HR A+P
Sbjct: 284 EPVLFPGLRETPEAAAVVIEGI-----GPGQDAGQEPGGPDHQQEKPRGCCHRPEAQPRQ 338
Query: 225 SQQ 227
+QQ
Sbjct: 339 AQQ 341
>gi|239749462 PREDICTED: similar to ubiquitin protein ligase E3
component n-recognin 5 isoform 2 [Homo sapiens]
Length = 2277
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 54 WDVLESLDMEAMLDTVQAWLSSPQKFARAHGVSVQPEAS-----DTHILLLEGFLLYSYK 108
W ++E + M D V W SSP A G P + D H+ + Y
Sbjct: 2193 WSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTANTCISRLYV 2252
Query: 109 PLVDLYSRRYFL 120
P LYS + L
Sbjct: 2253 P---LYSSKQIL 2261
>gi|113420453 PREDICTED: similar to ubiquitin protein ligase E3
component n-recognin 5 isoform 1 [Homo sapiens]
Length = 2796
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 54 WDVLESLDMEAMLDTVQAWLSSPQKFARAHGVSVQPEAS-----DTHILLLEGFLLYSYK 108
W ++E + M D V W SSP A G P + D H+ + Y
Sbjct: 2712 WSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTANTCISRLYV 2771
Query: 109 PLVDLYSRRYFL 120
P LYS + L
Sbjct: 2772 P---LYSSKQIL 2780
>gi|239746185 PREDICTED: hypothetical protein XP_002343659 [Homo
sapiens]
Length = 977
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 166 EVVYLDGMKSREELFREVLEDIQNSLLNRSQESAPSPARPARTQGPGRGCGHR-TARPAA 224
E V G++ E V+E I Q++ P P Q RGC HR A+P
Sbjct: 284 EPVLFPGLRETPEAAAVVIEGI-----GPGQDAGQEPGGPDHQQEQPRGCCHRPEAQPRQ 338
Query: 225 SQQ 227
+QQ
Sbjct: 339 AQQ 341
>gi|15147337 ubiquitin protein ligase E3 component n-recognin 5 [Homo
sapiens]
Length = 2799
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 54 WDVLESLDMEAMLDTVQAWLSSPQKFARAHGVSVQPEAS-----DTHILLLEGFLLYSYK 108
W ++E + M D V W SSP A G P + D H+ + Y
Sbjct: 2715 WSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTANTCISRLYV 2774
Query: 109 PLVDLYSRRYFL 120
P LYS + L
Sbjct: 2775 P---LYSSKQIL 2783
>gi|4504567 interferon regulatory factor 8 [Homo sapiens]
Length = 426
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 6 GIGGMTNGGKTTLTNSLLRALPNCCVIHQDDFFKPQDQIAV 46
G G + + + + R P+ C HQ FF+ QI V
Sbjct: 386 GAGSVMQAPEEPPPDQVFRMFPDICASHQRSFFRENQQITV 426
>gi|59814247 budding uninhibited by benzimidazoles 1 beta [Homo
sapiens]
Length = 1050
Score = 28.1 bits (61), Expect = 6.6
Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 25/161 (15%)
Query: 58 ESLDMEAMLDTVQAWLSSPQKFARAHGVSVQP----------EASDTHILLLEGFLLYSY 107
E+ E TVQ W++ P A+ + + P +T L+ +L S+
Sbjct: 281 EASTAELSKPTVQPWIAPPMPRAKENELQAGPWNTGRSLEHRPRGNTASLIAVPAVLPSF 340
Query: 108 KPLVDLYSRRYFLTVPYEECKWRRSTRNYTVPDPPGLFDGHVWPMYQKYRQEMEANGVEV 167
P V+ +++ +T CK S + PG +G Q ++Q E ++
Sbjct: 341 TPYVEETAQQPVMT----PCKIEPSINHILSTRKPGKEEGDPLQRVQSHQQASEEKKEKM 396
Query: 168 VY-----------LDGMKSREELFREVLEDIQNSLLNRSQE 197
+Y + R E+FR+ L++ + + L S E
Sbjct: 397 MYCKEKIYAGVGEFSFEEIRAEVFRKKLKEQREAELLTSAE 437
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 197 ESAPSPARPARTQGPGRGCGHRTARPAAS 225
+ AP+P++P +QGP + G PA S
Sbjct: 965 KQAPAPSQPPTSQGPPKSTGQAPPAPAKS 993
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,757,546
Number of Sequences: 37866
Number of extensions: 432109
Number of successful extensions: 1680
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1658
Number of HSP's gapped (non-prelim): 45
length of query: 230
length of database: 18,247,518
effective HSP length: 99
effective length of query: 131
effective length of database: 14,498,784
effective search space: 1899340704
effective search space used: 1899340704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.