Guide to the Human Genome
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Name: ITGB1BP3 Sequence: fasta or formatted (230aa) NCBI GI: 24762248
Description:

integrin beta 1 binding protein 3

Referenced in:

Integrins
Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         14           2
 C cysteine            1.7          4           2
 D aspartate           6.1         14           2
 E glutamate           6.5         15           2
 F phenylalanine       3.5          8           2
 G glycine             7.4         17           2
 H histidine           2.2          5           1
 I isoleucine          2.6          6           1
 K lysine              3.9          9           1
 L leucine            10.0         23           3
 M methionine          3.5          8           1
 N asparagine          3.0          7           1
 P proline             6.5         15           2
 Q glutamine           6.1         14           2
 R arginine            7.0         16           2
 S serine              7.0         16           2
 T threonine           4.8         11           2
 V valine              6.5         15           2
 W tryptophan          1.7          4           1
 Y tyrosine            3.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integrin beta 1 binding protein 3 
C9orf95               0.424   nicotinamide riboside kinase 1 isoform 1 
C9orf95               0.315   nicotinamide riboside kinase 1 isoform 2 
UCKL1                 0.027   uridine-cytidine kinase 1-like 1 
N4BP2L2               0.013   phosphonoformate immuno-associated protein 5 isoform ...
CADPS2                0.011   Ca2+-dependent activator protein for secretion 2 is...
CADPS2                0.011   Ca2+-dependent activator protein for secretion 2 is...
DACT3                 0.011   thymus expressed gene 3-like 
N4BP2L1               0.011   NEDD4 binding protein 2-like 1 isoform 2 
N4BP2L1               0.011   NEDD4 binding protein 2-like 1 isoform 1 
CCNB1IP1              0.011   cyclin B1 interacting protein 1 isoform 4 
CCNB1IP1              0.011   cyclin B1 interacting protein 1 isoform 3 
CCNB1IP1              0.011   cyclin B1 interacting protein 1 isoform 2 
CCNB1IP1              0.011   cyclin B1 interacting protein 1 isoform 1 
UCK1                  0.009   uridine-cytidine kinase 1 isoform a 
UCK1                  0.009   uridine-cytidine kinase 1 isoform b 
CNTLN                 0.009   centlein isoform 1 
KCNN3                 0.007   small conductance calcium-activated potassium chann...
ARL13A                0.007   ADP-ribosylation factor-like 13 isoform b 
ARL13A                0.007   ADP-ribosylation factor-like 13 isoform a 
ARL13A                0.007   ADP-ribosylation factor-like 13 isoform a 
LOC100292280          0.007   PREDICTED: hypothetical protein 
LOC100290478          0.007   PREDICTED: hypothetical protein XP_002347965 
LOC730429             0.007   PREDICTED: similar to ubiquitin protein ligase E3 c...
LOC730429             0.007   PREDICTED: similar to ubiquitin protein ligase E3 c...
LOC100287986          0.007   PREDICTED: hypothetical protein XP_002343659 
UBR5                  0.007   ubiquitin protein ligase E3 component n-recognin 5 [...
IRF8                  0.007   interferon regulatory factor 8 
BUB1B                 0.007   budding uninhibited by benzimidazoles 1 beta 
PCLO                  0.007   piccolo isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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