Guide to the Human Genome
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Name: ARL13A Sequence: fasta or formatted (290aa) NCBI GI: 241982687
Description:

ADP-ribosylation factor-like 13 isoform a

Referenced in:

ADP-Ribosylation Factors

Other entries for this name:
alt mRNA [290aa] ADP-ribosylation factor-like 13 isoform a
alt prot [256aa] ADP-ribosylation factor-like 13 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         12           1
 C cysteine            4.5         13           2
 D aspartate           4.1         12           1
 E glutamate           6.9         20           2
 F phenylalanine       1.7          5           1
 G glycine             4.1         12           1
 H histidine           2.1          6           1
 I isoleucine          6.2         18           2
 K lysine              9.0         26           3
 L leucine            12.8         37           3
 M methionine          2.8          8           1
 N asparagine          4.8         14           2
 P proline             4.1         12           2
 Q glutamine           3.4         10           1
 R arginine            6.9         20           2
 S serine              9.0         26           2
 T threonine           6.2         18           2
 V valine              4.1         12           1
 W tryptophan          1.0          3           1
 Y tyrosine            2.1          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ADP-ribosylation factor-like 13 isoform a 
ARL13A                1.000   ADP-ribosylation factor-like 13 isoform a 
ARL13A                0.843   ADP-ribosylation factor-like 13 isoform b 
ARL13B                0.251   ADP-ribosylation factor-like 2-like 1 isoform 1 [Hom...
ARL2                  0.112   ADP-ribosylation factor-like 2 
ARFRP1                0.098   ADP-ribosylation factor related protein 1 isoform a [...
ARFRP1                0.091   ADP-ribosylation factor related protein 1 isoform b...
ARL3                  0.087   ADP-ribosylation factor-like 3 
SAR1B                 0.087   SAR1a gene homolog 2 
SAR1B                 0.087   SAR1a gene homolog 2 
ARL14                 0.085   ADP-ribosylation factor-like 14 
SAR1A                 0.085   SAR1a gene homolog 1 
SAR1A                 0.085   SAR1a gene homolog 1 
ARL5B                 0.082   ADP-ribosylation factor-like 8 
ARL4D                 0.082   ADP-ribosylation factor-like 4D 
ARF6                  0.080   ADP-ribosylation factor 6 
ARL4A                 0.078   ADP-ribosylation factor-like 4A 
ARL4A                 0.078   ADP-ribosylation factor-like 4A 
ARL4A                 0.078   ADP-ribosylation factor-like 4A 
ARL13B                0.078   ADP-ribosylation factor-like 2-like 1 isoform 2 [Hom...
ARL5A                 0.077   ADP-ribosylation factor-like 5A isoform 1 
TRIM23                0.077   ADP-ribosylation factor domain protein 1 isoform alph...
ARL6                  0.075   ADP-ribosylation factor-like 6 
ARL6                  0.075   ADP-ribosylation factor-like 6 
ARF1                  0.073   ADP-ribosylation factor 1 
ARF1                  0.073   ADP-ribosylation factor 1 
ARF1                  0.073   ADP-ribosylation factor 1 
ARF1                  0.073   ADP-ribosylation factor 1 
ARF3                  0.073   ADP-ribosylation factor 3 
TRIM23                0.073   ADP-ribosylation factor domain protein 1 isoform gam...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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