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Search of human proteins with 244790138
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|244790138 hypothetical protein LOC643008 [Homo sapiens]
(77 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|244790138 hypothetical protein LOC643008 [Homo sapiens] 159 5e-40
gi|45545424 LISCH protein isoform 2 [Homo sapiens] 37 0.003
gi|211059429 synaptotagmin II [Homo sapiens] 36 0.006
gi|31543670 synaptotagmin II [Homo sapiens] 36 0.006
gi|28557777 immunoglobulin-like domain containing receptor 1 [Ho... 35 0.017
gi|239756470 PREDICTED: hypothetical protein isoform 2 [Homo sap... 33 0.038
gi|239756468 PREDICTED: hypothetical protein isoform 3 [Homo sap... 33 0.038
gi|239750996 PREDICTED: hypothetical protein [Homo sapiens] 33 0.038
gi|239750994 PREDICTED: hypothetical protein [Homo sapiens] 33 0.038
gi|239745397 PREDICTED: hypothetical protein [Homo sapiens] 33 0.038
gi|239745395 PREDICTED: hypothetical protein [Homo sapiens] 33 0.038
gi|169209671 PREDICTED: hypothetical protein isoform 1 [Homo sap... 33 0.049
gi|89040598 PREDICTED: hypothetical protein isoform 4 [Homo sapi... 33 0.049
gi|89039658 PREDICTED: hypothetical protein isoform 2 [Homo sapi... 33 0.049
gi|122937285 immunoglobulin superfamily 5 like [Homo sapiens] 32 0.14
gi|4885299 G protein-coupled receptor 15 [Homo sapiens] 31 0.25
gi|45505163 LISCH protein isoform 1 [Homo sapiens] 30 0.42
gi|21703710 scotin [Homo sapiens] 30 0.55
gi|4757886 pituitary tumor-transforming gene 1 protein-interacti... 30 0.55
gi|45504382 DnaJ (Hsp40) homolog, subfamily C, member 5 [Homo sa... 29 0.71
gi|27735107 DnaJ (Hsp40) homolog, subfamily C, member 5 gamma [H... 29 0.71
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof... 28 1.2
gi|239753596 PREDICTED: similar to mCG127065 [Homo sapiens] 28 1.6
gi|169164961 PREDICTED: similar to mCG127065 [Homo sapiens] 28 1.6
gi|29126218 DnaJ (Hsp40) homolog, subfamily C, member 5 beta [Ho... 28 1.6
gi|29126245 taste receptor, type 2, member 45 [Homo sapiens] 28 2.1
gi|6912554 olfactory receptor, family 1, subfamily F, member 1 [... 28 2.1
gi|40786420 immunoglobulin-like domain containing receptor 2 [Ho... 27 2.7
gi|53729363 leucine rich repeat and sterile alpha motif containi... 27 2.7
gi|53729361 leucine rich repeat and sterile alpha motif containi... 27 2.7
>gi|244790138 hypothetical protein LOC643008 [Homo sapiens]
Length = 77
Score = 159 bits (402), Expect = 5e-40
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MAATDFVQEMRAVGERLLLKLQRLPQAEPVEIVAFSVIILFTATVLLLLLIACSCCCTHC 60
MAATDFVQEMRAVGERLLLKLQRLPQAEPVEIVAFSVIILFTATVLLLLLIACSCCCTHC
Sbjct: 1 MAATDFVQEMRAVGERLLLKLQRLPQAEPVEIVAFSVIILFTATVLLLLLIACSCCCTHC 60
Query: 61 CCPERRGRKVQVQPTPP 77
CCPERRGRKVQVQPTPP
Sbjct: 61 CCPERRGRKVQVQPTPP 77
>gi|45545424 LISCH protein isoform 2 [Homo sapiens]
Length = 649
Score = 37.4 bits (85), Expect = 0.003
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 26 QAEPVEIVAFSVIILFTATVLLLLLIACSC-CCTHCCC 62
QA P+E F V++ A ++ LLL C C CC H CC
Sbjct: 253 QAGPIEDWLFVVVVCLAAFLIFLLLGICWCQCCPHTCC 290
>gi|211059429 synaptotagmin II [Homo sapiens]
Length = 419
Score = 36.2 bits (82), Expect = 0.006
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 15 ERLLLKLQRLPQAEPVEIVAFSVIILFTATVLLLLLIACSCCCTHCCCPERRGRK 69
E+L ++ ++P P ++A +V+ LLLL C C C CCC +++ +K
Sbjct: 49 EKLFNEINKIP-LPPWALIAIAVV------AGLLLLTCCFCICKKCCCKKKKNKK 96
>gi|31543670 synaptotagmin II [Homo sapiens]
Length = 419
Score = 36.2 bits (82), Expect = 0.006
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 15 ERLLLKLQRLPQAEPVEIVAFSVIILFTATVLLLLLIACSCCCTHCCCPERRGRK 69
E+L ++ ++P P ++A +V+ LLLL C C C CCC +++ +K
Sbjct: 49 EKLFNEINKIP-LPPWALIAIAVV------AGLLLLTCCFCICKKCCCKKKKNKK 96
>gi|28557777 immunoglobulin-like domain containing receptor 1 [Homo
sapiens]
Length = 502
Score = 34.7 bits (78), Expect = 0.017
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 16/45 (35%)
Query: 36 SVIILFTATVLLLLLIA----------------CSCCCTHCCCPE 64
+VI + +LLLLLI C CC HCCCPE
Sbjct: 170 TVIFIILGALLLLLLIGVCWCQCCPQYCCCYIRCPCCPAHCCCPE 214
>gi|239756470 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 88
Score = 33.5 bits (75), Expect = 0.038
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 31 EIVAFSVIILFTATVLLLLLIACSCCCTHCCCPERRGRKVQVQPTPP 77
+ VAF V + F TVLLLLL+ + C CCC R+ + P
Sbjct: 30 DTVAFIVFLTFMGTVLLLLLLVVAHC---CCCSSPGPRRESPRKVSP 73
>gi|239756468 PREDICTED: hypothetical protein isoform 3 [Homo
sapiens]
Length = 135
Score = 33.5 bits (75), Expect = 0.038
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 31 EIVAFSVIILFTATVLLLLLIACSCCCTHCCCPERRGRKVQVQPTPP 77
+ VAF V + F TVLLLLL+ + C CCC R+ + P
Sbjct: 30 DTVAFIVFLTFMGTVLLLLLLVVAHC---CCCSSPGPRRESPRKVSP 73
>gi|239750996 PREDICTED: hypothetical protein [Homo sapiens]
Length = 88
Score = 33.5 bits (75), Expect = 0.038
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 31 EIVAFSVIILFTATVLLLLLIACSCCCTHCCCPERRGRKVQVQPTPP 77
+ VAF V + F TVLLLLL+ + C CCC R+ + P
Sbjct: 30 DTVAFIVFLTFMGTVLLLLLLVVAHC---CCCSSPGPRRESPRKVSP 73
>gi|239750994 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 33.5 bits (75), Expect = 0.038
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 31 EIVAFSVIILFTATVLLLLLIACSCCCTHCCCPERRGRKVQVQPTPP 77
+ VAF V + F TVLLLLL+ + C CCC R+ + P
Sbjct: 30 DTVAFIVFLTFMGTVLLLLLLVVAHC---CCCSSPGPRRESPRKVSP 73
>gi|239745397 PREDICTED: hypothetical protein [Homo sapiens]
Length = 88
Score = 33.5 bits (75), Expect = 0.038
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 31 EIVAFSVIILFTATVLLLLLIACSCCCTHCCCPERRGRKVQVQPTPP 77
+ VAF V + F TVLLLLL+ + C CCC R+ + P
Sbjct: 30 DTVAFIVFLTFMGTVLLLLLLVVAHC---CCCSSPGPRRESPRKVSP 73
>gi|239745395 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 33.5 bits (75), Expect = 0.038
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 31 EIVAFSVIILFTATVLLLLLIACSCCCTHCCCPERRGRKVQVQPTPP 77
+ VAF V + F TVLLLLL+ + C CCC R+ + P
Sbjct: 30 DTVAFIVFLTFMGTVLLLLLLVVAHC---CCCSSPGPRRESPRKVSP 73
>gi|169209671 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 83
Score = 33.1 bits (74), Expect = 0.049
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 31 EIVAFSVIILFTATVLLLLLIACSCCCTHCC 61
+ VAF V + F TVLLLLL+ + CC CC
Sbjct: 30 DTVAFIVFLTFMGTVLLLLLLVVAHCC--CC 58
>gi|89040598 PREDICTED: hypothetical protein isoform 4 [Homo
sapiens]
Length = 83
Score = 33.1 bits (74), Expect = 0.049
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 31 EIVAFSVIILFTATVLLLLLIACSCCCTHCC 61
+ VAF V + F TVLLLLL+ + CC CC
Sbjct: 30 DTVAFIVFLTFMGTVLLLLLLVVAHCC--CC 58
>gi|89039658 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 83
Score = 33.1 bits (74), Expect = 0.049
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 31 EIVAFSVIILFTATVLLLLLIACSCCCTHCC 61
+ VAF V + F TVLLLLL+ + CC CC
Sbjct: 30 DTVAFIVFLTFMGTVLLLLLLVVAHCC--CC 58
>gi|122937285 immunoglobulin superfamily 5 like [Homo sapiens]
Length = 407
Score = 31.6 bits (70), Expect = 0.14
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 53 CSCCCTHC-CCPERRGRKVQVQ 73
C+CCC C CC +RG ++Q Q
Sbjct: 297 CNCCCRCCFCCRRKRGFRIQFQ 318
>gi|4885299 G protein-coupled receptor 15 [Homo sapiens]
Length = 360
Score = 30.8 bits (68), Expect = 0.25
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 26 QAEPVEIVAFSVIILFTATVLLLLLIACSCCCTHCCC 62
+A P++++ V ++FT V LL ++ C CC C
Sbjct: 187 KATPIKLIWSLVALIFTFFVPLLSIVTCYCCIARKLC 223
>gi|45505163 LISCH protein isoform 1 [Homo sapiens]
Length = 630
Score = 30.0 bits (66), Expect = 0.42
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 15/45 (33%)
Query: 35 FSVIILFTATVLLLLL---------------IACSCCCTHCCCPE 64
F V++ A ++ LLL + C CC CCCPE
Sbjct: 243 FVVVVCLAAFLIFLLLGICWCQCCPHTCCCYVRCPCCPDKCCCPE 287
>gi|21703710 scotin [Homo sapiens]
Length = 240
Score = 29.6 bits (65), Expect = 0.55
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 33 VAFSVIILFTATVLLLLLIACSCCCTHCCCPERRGRKVQVQPT 75
+A + I + V +++ CSCCC + C RR R V T
Sbjct: 110 LAVGLTIFVLSVVTIIICFTCSCCCLYKTC--RRPRPVVTTTT 150
>gi|4757886 pituitary tumor-transforming gene 1 protein-interacting
protein precursor [Homo sapiens]
Length = 180
Score = 29.6 bits (65), Expect = 0.55
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 33 VAFSVIILFTATVLLLLLIACSCCCTHCCCPERRGRK 69
V F +I+ + V LL+ + CC CCC +R RK
Sbjct: 93 VNFEALIITMSVVGGTLLLGIAICCC-CCCRRKRSRK 128
>gi|45504382 DnaJ (Hsp40) homolog, subfamily C, member 5 [Homo
sapiens]
Length = 198
Score = 29.3 bits (64), Expect = 0.71
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 49 LLIACSCCCTHCCC 62
LL C CCC CCC
Sbjct: 115 LLTCCYCCCCLCCC 128
Score = 28.5 bits (62), Expect = 1.2
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 38 IILFTATVLLLLLIACSCCCTHCCC 62
+ +F + C CCC +CCC
Sbjct: 109 LFVFCGLLTCCYCCCCLCCCFNCCC 133
>gi|27735107 DnaJ (Hsp40) homolog, subfamily C, member 5 gamma [Homo
sapiens]
Length = 189
Score = 29.3 bits (64), Expect = 0.71
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 13/49 (26%)
Query: 41 FTATVLLLLLIACSCCCTHCCC---------PER-RGRKVQ--VQPTPP 77
F V+L L+ C C C CCC PE+ GRK Q VQ PP
Sbjct: 124 FKTLVILCTLLTCCCFCC-CCCFCCGALKPPPEQDSGRKYQQNVQSQPP 171
>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
a [Homo sapiens]
Length = 578
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 54 SCCCTHCCC-----PERRGRKVQVQPTP 76
SCC CCC P RRGR+ P+P
Sbjct: 167 SCCPCCCCCGCPDRPGRRGRRRGCAPSP 194
>gi|239753596 PREDICTED: similar to mCG127065 [Homo sapiens]
Length = 171
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 46 LLLLLIACSCCCTHCCCPERR 66
LL+L C CT CCP RR
Sbjct: 104 LLMLPGTCETVCTKMCCPSRR 124
>gi|169164961 PREDICTED: similar to mCG127065 [Homo sapiens]
Length = 171
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 46 LLLLLIACSCCCTHCCCPERR 66
LL+L C CT CCP RR
Sbjct: 104 LLMLPGTCETVCTKMCCPSRR 124
>gi|29126218 DnaJ (Hsp40) homolog, subfamily C, member 5 beta [Homo
sapiens]
Length = 199
Score = 28.1 bits (61), Expect = 1.6
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 53 CSCCCTHCCC 62
C CCC +CCC
Sbjct: 128 CLCCCCNCCC 137
Score = 26.2 bits (56), Expect = 6.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 45 VLLLLLIACSCCCTHCCC 62
V++ LL C CC CCC
Sbjct: 115 VIVGLLTGCYFCCCLCCC 132
>gi|29126245 taste receptor, type 2, member 45 [Homo sapiens]
Length = 299
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 19 LKLQRLPQAEPVEIVAFSVIILFTATVLLLLLIACSCC 56
+KL+R + + ++ FT T++ LL+ CS C
Sbjct: 166 IKLRRAMYLSDTTVTMLANLVPFTVTLISFLLLVCSLC 203
>gi|6912554 olfactory receptor, family 1, subfamily F, member 1
[Homo sapiens]
Length = 312
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 12 AVGERLLLKLQRLPQAEPVEIVAFSVIILFTATVLLLLLIACSCCCTHC 60
+V E LLL L R PQ + + V F + ++ ATVL LLI S C
Sbjct: 8 SVSEFLLLGLSRQPQQQHLLFVFF--LSMYLATVLGNLLIILSVSIDSC 54
>gi|40786420 immunoglobulin-like domain containing receptor 2 [Homo
sapiens]
Length = 639
Score = 27.3 bits (59), Expect = 2.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 51 IACSCCCTHCCCPE 64
+ C CC CCCP+
Sbjct: 220 VRCPCCPDSCCCPQ 233
>gi|53729363 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 25 PQAEPVEI---VAFSVIILFTATVLLLLLIACSCCCTHCCCPER 65
P A P E+ + V+ L ++ L CCC CC P R
Sbjct: 661 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLR 704
>gi|53729361 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 25 PQAEPVEI---VAFSVIILFTATVLLLLLIACSCCCTHCCCPER 65
P A P E+ + V+ L ++ L CCC CC P R
Sbjct: 661 PSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLR 704
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.332 0.141 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,810,675
Number of Sequences: 37866
Number of extensions: 86841
Number of successful extensions: 1211
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1038
Number of HSP's gapped (non-prelim): 115
length of query: 77
length of database: 18,247,518
effective HSP length: 49
effective length of query: 28
effective length of database: 16,392,084
effective search space: 458978352
effective search space used: 458978352
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.