Guide to the Human Genome
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Search of human proteins with 24308049

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|24308049 peptidylprolyl isomerase domain and WD repeat
containing 1 [Homo sapiens]
         (646 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|24308049 peptidylprolyl isomerase domain and WD repeat contai...  1314   0.0  
gi|19557636 peptidylprolyl isomerase-like 3 isoform PPIL3b [Homo...   167   3e-41
gi|19557640 peptidylprolyl isomerase-like 3 isoform PPIL3b [Homo...   167   3e-41
gi|7706339 peptidylprolyl isomerase-like 1 [Homo sapiens]             166   5e-41
gi|22547215 peptidylprolyl isomerase-like 2 isoform b [Homo sapi...   152   7e-37
gi|22547212 peptidylprolyl isomerase-like 2 isoform a [Homo sapi...   152   7e-37
gi|7657473 peptidylprolyl isomerase-like 2 isoform a [Homo sapiens]   152   7e-37
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]   135   9e-32
gi|64276486 serologically defined colon cancer antigen 10 [Homo ...   131   2e-30
gi|42560244 peptidylprolyl isomerase G [Homo sapiens]                 130   3e-30
gi|4758950 peptidylprolyl isomerase B precursor [Homo sapiens]        129   1e-29
gi|4826932 peptidylprolyl isomerase D [Homo sapiens]                  124   2e-28
gi|10863927 peptidylprolyl isomerase A [Homo sapiens]                 121   2e-27
gi|5031987 peptidylprolyl isomerase F precursor [Homo sapiens]        121   2e-27
gi|45439316 peptidylprolyl isomerase E isoform 2 [Homo sapiens]       121   2e-27
gi|45439318 peptidylprolyl isomerase E isoform 3 [Homo sapiens]       120   5e-27
gi|5174637 peptidylprolyl isomerase E isoform 1 [Homo sapiens]        120   5e-27
gi|4505991 peptidylprolyl isomerase C [Homo sapiens]                  118   2e-26
gi|169164370 PREDICTED: similar to TRIMCyp isoform 1 [Homo sapiens]   114   3e-25
gi|88958081 PREDICTED: similar to TRIMCyp isoform 2 [Homo sapiens]    114   3e-25
gi|88953813 PREDICTED: similar to peptidylprolyl isomerase A iso...   114   3e-25
gi|20911035 peptidylprolyl isomerase-like 4 [Homo sapiens]            112   8e-25
gi|5454154 peptidylprolyl isomerase H [Homo sapiens]                  112   1e-24
gi|14277126 peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo...   108   2e-23
gi|221139811 peptidylprolyl isomerase A (cyclophilin A)-like 4E ...   107   4e-23
gi|169163623 PREDICTED: similar to TRIM5/CypA fusion protein [Ho...   106   6e-23
gi|169164185 PREDICTED: similar to TRIM5/CypA fusion protein [Ho...   106   6e-23
gi|169163387 PREDICTED: similar to TRIM5/CypA fusion protein [Ho...   106   6e-23
gi|178057341 peptidylprolyl isomerase A (cyclophilin A)-like 4G ...   105   1e-22
gi|219842199 peptidylprolyl isomerase A (cyclophilin A)-like 4B ...   103   4e-22

>gi|24308049 peptidylprolyl isomerase domain and WD repeat
           containing 1 [Homo sapiens]
          Length = 646

 Score = 1314 bits (3401), Expect = 0.0
 Identities = 646/646 (100%), Positives = 646/646 (100%)

Query: 1   MAAESGSDFQQRRRRRRDPEEPEKTELSERELAVAVAVSQENDEENEERWVGPLPVEATL 60
           MAAESGSDFQQRRRRRRDPEEPEKTELSERELAVAVAVSQENDEENEERWVGPLPVEATL
Sbjct: 1   MAAESGSDFQQRRRRRRDPEEPEKTELSERELAVAVAVSQENDEENEERWVGPLPVEATL 60

Query: 61  AKKRKVLEFERVYLDNLPSASMYERSYMHRDVITHVVCTKTDFIITASHDGHVKFWKKIE 120
           AKKRKVLEFERVYLDNLPSASMYERSYMHRDVITHVVCTKTDFIITASHDGHVKFWKKIE
Sbjct: 61  AKKRKVLEFERVYLDNLPSASMYERSYMHRDVITHVVCTKTDFIITASHDGHVKFWKKIE 120

Query: 121 EGIEFVKHFRSHLGVIESIAVSSEGALFCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQC 180
           EGIEFVKHFRSHLGVIESIAVSSEGALFCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQC
Sbjct: 121 EGIEFVKHFRSHLGVIESIAVSSEGALFCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQC 180

Query: 181 EWIYCPGDAISSVAASEKSTGKIFIYDGRGDNQPLHIFDKLHTSPLTQIRLNPVYKAVVS 240
           EWIYCPGDAISSVAASEKSTGKIFIYDGRGDNQPLHIFDKLHTSPLTQIRLNPVYKAVVS
Sbjct: 181 EWIYCPGDAISSVAASEKSTGKIFIYDGRGDNQPLHIFDKLHTSPLTQIRLNPVYKAVVS 240

Query: 241 SDKSGMIEYWTGPPHEYKFPKNVNWEYKTDTDLYEFAKCKAYPTSVCFSPDGKKIATIGS 300
           SDKSGMIEYWTGPPHEYKFPKNVNWEYKTDTDLYEFAKCKAYPTSVCFSPDGKKIATIGS
Sbjct: 241 SDKSGMIEYWTGPPHEYKFPKNVNWEYKTDTDLYEFAKCKAYPTSVCFSPDGKKIATIGS 300

Query: 301 DRKVRIFRFVTGKLMRVFDESLSMFTELQQMRQQLPDMEFGRRMAVERELEKVDAVRLIN 360
           DRKVRIFRFVTGKLMRVFDESLSMFTELQQMRQQLPDMEFGRRMAVERELEKVDAVRLIN
Sbjct: 301 DRKVRIFRFVTGKLMRVFDESLSMFTELQQMRQQLPDMEFGRRMAVERELEKVDAVRLIN 360

Query: 361 IVFDETGHFVLYGTMLGIKVINVETNRCVRILGKQENIRVMQLALFQGIAKKHRAATTIE 420
           IVFDETGHFVLYGTMLGIKVINVETNRCVRILGKQENIRVMQLALFQGIAKKHRAATTIE
Sbjct: 361 IVFDETGHFVLYGTMLGIKVINVETNRCVRILGKQENIRVMQLALFQGIAKKHRAATTIE 420

Query: 421 MKASENPVLQNIQADPTIVCTSFKKNRFYMFTKREPEDTKSADSDRDVFNEKPSKEEVMA 480
           MKASENPVLQNIQADPTIVCTSFKKNRFYMFTKREPEDTKSADSDRDVFNEKPSKEEVMA
Sbjct: 421 MKASENPVLQNIQADPTIVCTSFKKNRFYMFTKREPEDTKSADSDRDVFNEKPSKEEVMA 480

Query: 481 ATQAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGF 540
           ATQAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGF
Sbjct: 481 ATQAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGF 540

Query: 541 MIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTP 600
           MIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTP
Sbjct: 541 MIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTP 600

Query: 601 WLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 646
           WLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK
Sbjct: 601 WLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 646


>gi|19557636 peptidylprolyl isomerase-like 3 isoform PPIL3b [Homo
           sapiens]
          Length = 161

 Score =  167 bits (423), Expect = 3e-41
 Identities = 82/153 (53%), Positives = 102/153 (66%)

Query: 493 SAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGM 552
           S  +HT +GDI  ++F    PKT ENF     + YYNG  FHR IKGFM+QTGDPTGTG 
Sbjct: 2   SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGR 61

Query: 553 GGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRV 612
           GG SIWG +FEDE+   L+H+    +SMAN G NTNGSQFFIT    P LD K+TVFG+V
Sbjct: 62  GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKV 121

Query: 613 TKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 645
             G+E +  +  + VN KT +P  DV I +IT+
Sbjct: 122 IDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154


>gi|19557640 peptidylprolyl isomerase-like 3 isoform PPIL3b [Homo
           sapiens]
          Length = 161

 Score =  167 bits (423), Expect = 3e-41
 Identities = 82/153 (53%), Positives = 102/153 (66%)

Query: 493 SAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGM 552
           S  +HT +GDI  ++F    PKT ENF     + YYNG  FHR IKGFM+QTGDPTGTG 
Sbjct: 2   SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGR 61

Query: 553 GGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRV 612
           GG SIWG +FEDE+   L+H+    +SMAN G NTNGSQFFIT    P LD K+TVFG+V
Sbjct: 62  GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKV 121

Query: 613 TKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 645
             G+E +  +  + VN KT +P  DV I +IT+
Sbjct: 122 IDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154


>gi|7706339 peptidylprolyl isomerase-like 1 [Homo sapiens]
          Length = 166

 Score =  166 bits (421), Expect = 5e-41
 Identities = 82/146 (56%), Positives = 103/146 (70%), Gaps = 1/146 (0%)

Query: 496 IHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGE 555
           + TSMG I  +L+    PKT +NF   +R GYYNG  FHRIIK FMIQ GDPTGTG GG 
Sbjct: 16  LETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGA 75

Query: 556 SIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKG 615
           SI+G +FEDE H  L+      L+MANAG +TNGSQFF+T+ PT WLD KHT+FGRV +G
Sbjct: 76  SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQG 135

Query: 616 MEVVQRISNVKVNPKTDKPYEDVSII 641
           + +V R+  V+ N + D+P +DV II
Sbjct: 136 IGMVNRVGMVETNSQ-DRPVDDVKII 160


>gi|22547215 peptidylprolyl isomerase-like 2 isoform b [Homo
           sapiens]
          Length = 527

 Score =  152 bits (385), Expect = 7e-37
 Identities = 76/150 (50%), Positives = 98/150 (65%)

Query: 496 IHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGE 555
           +HT+ GD++ +L     PKT ENF    +  YY+G  FHR I+ F+IQ GDPTGTG GGE
Sbjct: 284 LHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGE 343

Query: 556 SIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKG 615
           S WG  F+DEF   L H     LSMAN+G N+N SQFFIT     +LD KHT+FGRV  G
Sbjct: 344 SYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGG 403

Query: 616 MEVVQRISNVKVNPKTDKPYEDVSIINITV 645
            +V+  + NV+ +PKTD+P E++ I   TV
Sbjct: 404 FDVLTAMENVESDPKTDRPKEEIRIDATTV 433


>gi|22547212 peptidylprolyl isomerase-like 2 isoform a [Homo
           sapiens]
          Length = 520

 Score =  152 bits (385), Expect = 7e-37
 Identities = 76/150 (50%), Positives = 98/150 (65%)

Query: 496 IHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGE 555
           +HT+ GD++ +L     PKT ENF    +  YY+G  FHR I+ F+IQ GDPTGTG GGE
Sbjct: 284 LHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGE 343

Query: 556 SIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKG 615
           S WG  F+DEF   L H     LSMAN+G N+N SQFFIT     +LD KHT+FGRV  G
Sbjct: 344 SYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGG 403

Query: 616 MEVVQRISNVKVNPKTDKPYEDVSIINITV 645
            +V+  + NV+ +PKTD+P E++ I   TV
Sbjct: 404 FDVLTAMENVESDPKTDRPKEEIRIDATTV 433


>gi|7657473 peptidylprolyl isomerase-like 2 isoform a [Homo sapiens]
          Length = 520

 Score =  152 bits (385), Expect = 7e-37
 Identities = 76/150 (50%), Positives = 98/150 (65%)

Query: 496 IHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGE 555
           +HT+ GD++ +L     PKT ENF    +  YY+G  FHR I+ F+IQ GDPTGTG GGE
Sbjct: 284 LHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGE 343

Query: 556 SIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKG 615
           S WG  F+DEF   L H     LSMAN+G N+N SQFFIT     +LD KHT+FGRV  G
Sbjct: 344 SYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGG 403

Query: 616 MEVVQRISNVKVNPKTDKPYEDVSIINITV 645
            +V+  + NV+ +PKTD+P E++ I   TV
Sbjct: 404 FDVLTAMENVESDPKTDRPKEEIRIDATTV 433


>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
          Length = 1462

 Score =  135 bits (341), Expect = 9e-32
 Identities = 79/166 (47%), Positives = 100/166 (60%), Gaps = 14/166 (8%)

Query: 492 DSAIIHTSMGDIHTKLFPVECPKTVENF-CVHS----------RNGYYNGHTFHRIIKGF 540
           D  I    +G I  +LF   CPKT +NF C+ S          +   Y G TFHR++K F
Sbjct: 12  DIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNF 71

Query: 541 MIQTGD-PTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPT 599
           MIQ GD   G G GGESI+GG F+DE +  L+HDR + LSMAN G +TNGSQFFIT  P 
Sbjct: 72  MIQGGDFSEGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPA 130

Query: 600 PWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 645
           P LD  H VFG V  G EV+++I N+K +    +PY DV +I+  V
Sbjct: 131 PHLDGVHVVFGLVISGFEVIEQIENLKTD-AASRPYADVRVIDCGV 175


>gi|64276486 serologically defined colon cancer antigen 10 [Homo
           sapiens]
          Length = 472

 Score =  131 bits (330), Expect = 2e-30
 Identities = 62/119 (52%), Positives = 82/119 (68%)

Query: 495 IIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGG 554
           ++ T+ GDI  +L+  E PK   NF       YY+   FHR++ GF++Q GDPTGTG GG
Sbjct: 16  LLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGG 75

Query: 555 ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVT 613
           ESI+G  F+DEFHS LR +R   ++MANAGS+ NGSQFF T+     L+NKHT+FG+VT
Sbjct: 76  ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT 134


>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
          Length = 754

 Score =  130 bits (328), Expect = 3e-30
 Identities = 75/172 (43%), Positives = 101/172 (58%), Gaps = 14/172 (8%)

Query: 483 QAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRNG--------YYNGH 531
           + + P+   D AI +   G +  +LF   CPKT ENF   C   +          +Y   
Sbjct: 4   KVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSC 63

Query: 532 TFHRIIKGFMIQTGD-PTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGS 590
            FHR++K FM+Q GD   G G GGESI+GG FEDE  + ++H++ + LSMAN G +TNGS
Sbjct: 64  LFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFA-VKHNKEFLLSMANRGKDTNGS 122

Query: 591 QFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 642
           QFFIT  PTP LD  H VFG+V  G EVV+ I N K +    KP+ +V I++
Sbjct: 123 QFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTD-AASKPFAEVRILS 173


>gi|4758950 peptidylprolyl isomerase B precursor [Homo sapiens]
          Length = 216

 Score =  129 bits (323), Expect = 1e-29
 Identities = 76/153 (49%), Positives = 97/153 (63%), Gaps = 6/153 (3%)

Query: 492 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPT 548
           D  I    +G +   LF    PKTV+NF   +    G+ Y    FHR+IK FMIQ GD T
Sbjct: 49  DLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFT 108

Query: 549 -GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHT 607
            G G GG+SI+G  F DE +  L+H  P  +SMANAG +TNGSQFFIT V T WLD KH 
Sbjct: 109 RGDGTGGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHV 167

Query: 608 VFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSI 640
           VFG+V +GMEVV+++ + K + + DKP +DV I
Sbjct: 168 VFGKVLEGMEVVRKVESTKTDSR-DKPLKDVII 199


>gi|4826932 peptidylprolyl isomerase D [Homo sapiens]
          Length = 370

 Score =  124 bits (312), Expect = 2e-28
 Identities = 82/161 (50%), Positives = 95/161 (59%), Gaps = 17/161 (10%)

Query: 487 PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHT-----------FHR 535
           P+   D  I    +G I  +LF    PKT ENF          GHT           FHR
Sbjct: 16  PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHR 75

Query: 536 IIKGFMIQTGDPTG-TGMGGESIWGGEFEDE-FHSTLRHDRPYTLSMANAGSNTNGSQFF 593
           IIK FMIQ GD +   G GGESI+G +FEDE FH   +HDR   LSMANAG NTNGSQFF
Sbjct: 76  IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFH--YKHDREGLLSMANAGRNTNGSQFF 133

Query: 594 ITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKP 634
           IT VPTP LD KH VFG+V KG+ V + + NV+V  K +KP
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGIGVARILENVEV--KGEKP 172


>gi|10863927 peptidylprolyl isomerase A [Homo sapiens]
          Length = 165

 Score =  121 bits (304), Expect = 2e-27
 Identities = 73/147 (49%), Positives = 89/147 (60%), Gaps = 6/147 (4%)

Query: 492 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPT 548
           D A+    +G +  +LF  + PKT ENF   S    G+ Y G  FHRII GFM Q GD T
Sbjct: 9   DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT 68

Query: 549 G-TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHT 607
              G GG+SI+G +FEDE +  L+H  P  LSMANAG NTNGSQFFI    T WLD KH 
Sbjct: 69  RHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHV 127

Query: 608 VFGRVTKGMEVVQRISNV-KVNPKTDK 633
           VFG+V +GM +V+ +      N KT K
Sbjct: 128 VFGKVKEGMNIVEAMERFGSRNGKTSK 154


>gi|5031987 peptidylprolyl isomerase F precursor [Homo sapiens]
          Length = 207

 Score =  121 bits (304), Expect = 2e-27
 Identities = 64/116 (55%), Positives = 76/116 (65%), Gaps = 5/116 (4%)

Query: 513 PKTVENF---CVHSRNGYYNGHTFHRIIKGFMIQTGDPTG-TGMGGESIWGGEFEDEFHS 568
           PKT ENF   C   +   Y G TFHR+I  FM Q GD T   G GG+SI+G  F DE + 
Sbjct: 72  PKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDE-NF 130

Query: 569 TLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISN 624
           TL+H  P  LSMANAG NTNGSQFFI  + T WLD KH VFG V +GM+VV++I +
Sbjct: 131 TLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIES 186


>gi|45439316 peptidylprolyl isomerase E isoform 2 [Homo sapiens]
          Length = 296

 Score =  121 bits (304), Expect = 2e-27
 Identities = 73/184 (39%), Positives = 102/184 (55%), Gaps = 10/184 (5%)

Query: 460 KSADSDRDVFNEKPSKEEV-----MAATQAEGPKRVSDSAIIHTSMGDIHTKLFPVECPK 514
           K+ + +++    +P K E      +A      P+   D  I +   G I   L     P 
Sbjct: 108 KTLEENKEEEGSEPPKAETQEGEPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPM 167

Query: 515 TVENF---CVHSRNGYYNGHTFHRIIKGFMIQTGDPTG-TGMGGESIWGGEFEDEFHSTL 570
           T ENF   C H +   + G +FHRII  FM Q GD T   G GG+SI+G +F+DE +  L
Sbjct: 168 TAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDE-NFIL 226

Query: 571 RHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPK 630
           +H  P  LSMAN+G NTNGSQFF+T   T WLD KH VFG VT+G++V+++I   + +  
Sbjct: 227 KHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEKQEESAI 286

Query: 631 TDKP 634
           T +P
Sbjct: 287 TSQP 290


>gi|45439318 peptidylprolyl isomerase E isoform 3 [Homo sapiens]
          Length = 235

 Score =  120 bits (300), Expect = 5e-27
 Identities = 76/190 (40%), Positives = 103/190 (54%), Gaps = 12/190 (6%)

Query: 460 KSADSDRDVFNEKPSKEEV-----MAATQAEGPKRVSDSAIIHTSMGDIHTKLFPVECPK 514
           K+ + +++    +P K E      +A      P+   D  I +   G I   L     P 
Sbjct: 42  KTLEENKEEEGSEPPKAETQEGEPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPM 101

Query: 515 TVENF---CVHSRNGYYNGHTFHRIIKGFMIQTGDPTG-TGMGGESIWGGEFEDEFHSTL 570
           T ENF   C H +   + G +FHRII  FM Q GD T   G GG+SI+G +F+DE +  L
Sbjct: 102 TAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDE-NFIL 160

Query: 571 RHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPK 630
           +H  P  LSMAN+G NTNGSQFF+T   T WLD KH VFG VT+G++V+++I       K
Sbjct: 161 KHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE--AQGSK 218

Query: 631 TDKPYEDVSI 640
             KP + V I
Sbjct: 219 DGKPKQKVII 228


>gi|5174637 peptidylprolyl isomerase E isoform 1 [Homo sapiens]
          Length = 301

 Score =  120 bits (300), Expect = 5e-27
 Identities = 76/190 (40%), Positives = 103/190 (54%), Gaps = 12/190 (6%)

Query: 460 KSADSDRDVFNEKPSKEEV-----MAATQAEGPKRVSDSAIIHTSMGDIHTKLFPVECPK 514
           K+ + +++    +P K E      +A      P+   D  I +   G I   L     P 
Sbjct: 108 KTLEENKEEEGSEPPKAETQEGEPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPM 167

Query: 515 TVENF---CVHSRNGYYNGHTFHRIIKGFMIQTGDPTG-TGMGGESIWGGEFEDEFHSTL 570
           T ENF   C H +   + G +FHRII  FM Q GD T   G GG+SI+G +F+DE +  L
Sbjct: 168 TAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDE-NFIL 226

Query: 571 RHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPK 630
           +H  P  LSMAN+G NTNGSQFF+T   T WLD KH VFG VT+G++V+++I       K
Sbjct: 227 KHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE--AQGSK 284

Query: 631 TDKPYEDVSI 640
             KP + V I
Sbjct: 285 DGKPKQKVII 294


>gi|4505991 peptidylprolyl isomerase C [Homo sapiens]
          Length = 212

 Score =  118 bits (295), Expect = 2e-26
 Identities = 76/155 (49%), Positives = 90/155 (58%), Gaps = 6/155 (3%)

Query: 492 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGD-P 547
           D  I    +G I   LF    PKTVENF   +    GY Y G  FHR+IK FMIQ GD  
Sbjct: 43  DVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDIT 102

Query: 548 TGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHT 607
           TG G GG SI+G  F DE +  L+H     +SMANAG +TNGSQFFIT+    WLD KH 
Sbjct: 103 TGDGTGGVSIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHV 161

Query: 608 VFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 642
           VFG+V  GM VV  I  ++     D+P  + SIIN
Sbjct: 162 VFGKVIDGMTVVHSI-ELQATDGHDRPLTNCSIIN 195


>gi|169164370 PREDICTED: similar to TRIMCyp isoform 1 [Homo sapiens]
          Length = 165

 Score =  114 bits (285), Expect = 3e-25
 Identities = 67/140 (47%), Positives = 87/140 (62%), Gaps = 6/140 (4%)

Query: 499 SMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPTG-TGMGG 554
           S+G I  +LF  + PKT ENFC  +    G+ Y G  FHRII GFM   GD T   G GG
Sbjct: 16  SLGRISFELFADKFPKTAENFCALNTGEKGFGYKGCCFHRIIPGFMCHGGDFTHHNGTGG 75

Query: 555 ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTK 614
           +SI+G + +D+ +  L+H  P  LSMANAG NTNGSQFFI    + WLD+KH V G+V +
Sbjct: 76  KSIYGEKVDDD-NFILKHTGPGILSMANAGPNTNGSQFFICTAKSEWLDSKHVVIGKVKE 134

Query: 615 GMEVVQRISNV-KVNPKTDK 633
           GM +V+ + +    N KT K
Sbjct: 135 GMNIVEAMEHFGSRNGKTSK 154


>gi|88958081 PREDICTED: similar to TRIMCyp isoform 2 [Homo sapiens]
          Length = 165

 Score =  114 bits (285), Expect = 3e-25
 Identities = 67/140 (47%), Positives = 87/140 (62%), Gaps = 6/140 (4%)

Query: 499 SMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPTG-TGMGG 554
           S+G I  +LF  + PKT ENFC  +    G+ Y G  FHRII GFM   GD T   G GG
Sbjct: 16  SLGRISFELFADKFPKTAENFCALNTGEKGFGYKGCCFHRIIPGFMCHGGDFTHHNGTGG 75

Query: 555 ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTK 614
           +SI+G + +D+ +  L+H  P  LSMANAG NTNGSQFFI    + WLD+KH V G+V +
Sbjct: 76  KSIYGEKVDDD-NFILKHTGPGILSMANAGPNTNGSQFFICTAKSEWLDSKHVVIGKVKE 134

Query: 615 GMEVVQRISNV-KVNPKTDK 633
           GM +V+ + +    N KT K
Sbjct: 135 GMNIVEAMEHFGSRNGKTSK 154


>gi|88953813 PREDICTED: similar to peptidylprolyl isomerase A
           isoform 2 [Homo sapiens]
          Length = 165

 Score =  114 bits (285), Expect = 3e-25
 Identities = 67/140 (47%), Positives = 87/140 (62%), Gaps = 6/140 (4%)

Query: 499 SMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPTG-TGMGG 554
           S+G I  +LF  + PKT ENFC  +    G+ Y G  FHRII GFM   GD T   G GG
Sbjct: 16  SLGRISFELFADKFPKTAENFCALNTGEKGFGYKGCCFHRIIPGFMCHGGDFTHHNGTGG 75

Query: 555 ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTK 614
           +SI+G + +D+ +  L+H  P  LSMANAG NTNGSQFFI    + WLD+KH V G+V +
Sbjct: 76  KSIYGEKVDDD-NFILKHTGPGILSMANAGPNTNGSQFFICTAKSEWLDSKHVVIGKVKE 134

Query: 615 GMEVVQRISNV-KVNPKTDK 633
           GM +V+ + +    N KT K
Sbjct: 135 GMNIVEAMEHFGSRNGKTSK 154


>gi|20911035 peptidylprolyl isomerase-like 4 [Homo sapiens]
          Length = 492

 Score =  112 bits (281), Expect = 8e-25
 Identities = 63/156 (40%), Positives = 93/156 (59%), Gaps = 9/156 (5%)

Query: 493 SAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGM 552
           + ++ T++GD+   L+  E P+   NF    +  YYN    H + + F+IQTGDPTGTG 
Sbjct: 2   AVLLETTLGDVVIDLYTEERPRACLNFLKLCKIKYYNYCLIHNVQRDFIIQTGDPTGTGR 61

Query: 553 GGESIWG-------GEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPT-PWLDN 604
           GGESI+G         FE E    ++H +  T+SM N GS+ +GSQF IT      +LD 
Sbjct: 62  GGESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDG 121

Query: 605 KHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSI 640
            HTVFG VT+GM+++++I+   V+ K   PY+D+ I
Sbjct: 122 VHTVFGEVTEGMDIIKKINETFVD-KDFVPYQDIRI 156


>gi|5454154 peptidylprolyl isomerase H [Homo sapiens]
          Length = 177

 Score =  112 bits (280), Expect = 1e-24
 Identities = 68/152 (44%), Positives = 85/152 (55%), Gaps = 11/152 (7%)

Query: 492 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY--------YNGHTFHRIIKGFMIQ 543
           D +I    +G +  +LF    PKT ENF       +        Y G TFHR+IK FMIQ
Sbjct: 16  DVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQ 75

Query: 544 TGD-PTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWL 602
            GD   G G G  SI+ G F DE +  LRH  P  LSMAN+G +TNG QFFIT     WL
Sbjct: 76  GGDFVNGDGTGVASIYRGPFADE-NFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWL 134

Query: 603 DNKHTVFGRVTKGMEVVQRISNVKVNPKTDKP 634
           D KH VFG++  G+ V+++I NV   P  +KP
Sbjct: 135 DGKHVVFGKIIDGLLVMRKIENVPTGP-NNKP 165


>gi|14277126 peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo
           sapiens]
          Length = 165

 Score =  108 bits (270), Expect = 2e-23
 Identities = 65/157 (41%), Positives = 88/157 (56%), Gaps = 4/157 (2%)

Query: 493 SAIIHTSMGDIHTKLFPVECPKT--VENFCVHSRNGYYNG-HTFHRIIKGF-MIQTGDPT 548
           S  +HT +GDI  ++F    PKT  +E+ CV      +    +      GF  +      
Sbjct: 2   SVTLHTDVGDIKIEVFCERTPKTCEMESRCVPQAGVQWRDLGSLQPPPPGFKQVFCLSLP 61

Query: 549 GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTV 608
            TG GG SIWG +FEDE+   L+H+    +SMAN G NTNGSQFFIT    P LD K+TV
Sbjct: 62  RTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 121

Query: 609 FGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 645
           FG+V  G+E +  +  + VN KT +P  DV I +IT+
Sbjct: 122 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 158


>gi|221139811 peptidylprolyl isomerase A (cyclophilin A)-like 4E
           [Homo sapiens]
          Length = 164

 Score =  107 bits (266), Expect = 4e-23
 Identities = 66/139 (47%), Positives = 81/139 (58%), Gaps = 6/139 (4%)

Query: 500 MGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPTG-TGMGGE 555
           +G I  KLF  + PKT ENF   S    G+ Y G  FHRII GFM Q GD T   G G +
Sbjct: 17  LGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDK 76

Query: 556 SIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKG 615
           SI+G +F+DE +   +H     LSMANAG NTNGSQFFI    T WLD KH  FG+V + 
Sbjct: 77  SIYGEKFDDE-NLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKER 135

Query: 616 MEVVQRISNVKV-NPKTDK 633
           + +V+   +    N KT K
Sbjct: 136 VNIVEATEHFGYRNSKTSK 154


>gi|169163623 PREDICTED: similar to TRIM5/CypA fusion protein [Homo
           sapiens]
          Length = 234

 Score =  106 bits (265), Expect = 6e-23
 Identities = 64/147 (43%), Positives = 84/147 (57%), Gaps = 6/147 (4%)

Query: 492 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY---YNGHTFHRIIKGFMIQTGDPT 548
           D ++    +G +  ++F  +  KT +NF   S       Y G  FHRII GFM Q GD T
Sbjct: 9   DISVSGKPLGHVSFRIFADKLSKTAQNFRALSTGEKGLDYKGSCFHRIIPGFMCQGGDFT 68

Query: 549 -GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHT 607
              G GG+S++G +F+DE +  L+  RP  LSMA AG NTNGSQFFI    T WL  KH 
Sbjct: 69  YNNGTGGKSLYGEKFDDE-NFILKRIRPGILSMAKAGPNTNGSQFFICTAXTEWLIGKHV 127

Query: 608 VFGRVTKGMEVVQRISNV-KVNPKTDK 633
           VFG+V +GM +V+ +      N KT K
Sbjct: 128 VFGKVKEGMNIVEAMEPFGSRNGKTSK 154


>gi|169164185 PREDICTED: similar to TRIM5/CypA fusion protein [Homo
           sapiens]
          Length = 234

 Score =  106 bits (265), Expect = 6e-23
 Identities = 64/147 (43%), Positives = 84/147 (57%), Gaps = 6/147 (4%)

Query: 492 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY---YNGHTFHRIIKGFMIQTGDPT 548
           D ++    +G +  ++F  +  KT +NF   S       Y G  FHRII GFM Q GD T
Sbjct: 9   DISVSGKPLGHVSFRIFADKLSKTAQNFRALSTGEKGLDYKGSCFHRIIPGFMCQGGDFT 68

Query: 549 -GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHT 607
              G GG+S++G +F+DE +  L+  RP  LSMA AG NTNGSQFFI    T WL  KH 
Sbjct: 69  YNNGTGGKSLYGEKFDDE-NFILKRIRPGILSMAKAGPNTNGSQFFICTAXTEWLIGKHV 127

Query: 608 VFGRVTKGMEVVQRISNV-KVNPKTDK 633
           VFG+V +GM +V+ +      N KT K
Sbjct: 128 VFGKVKEGMNIVEAMEPFGSRNGKTSK 154


>gi|169163387 PREDICTED: similar to TRIM5/CypA fusion protein [Homo
           sapiens]
          Length = 272

 Score =  106 bits (265), Expect = 6e-23
 Identities = 64/147 (43%), Positives = 84/147 (57%), Gaps = 6/147 (4%)

Query: 492 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY---YNGHTFHRIIKGFMIQTGDPT 548
           D ++    +G +  ++F  +  KT +NF   S       Y G  FHRII GFM Q GD T
Sbjct: 9   DISVSGKPLGHVSFRIFADKLSKTAQNFRALSTGEKGLDYKGSCFHRIIPGFMCQGGDFT 68

Query: 549 -GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHT 607
              G GG+S++G +F+DE +  L+  RP  LSMA AG NTNGSQFFI    T WL  KH 
Sbjct: 69  YNNGTGGKSLYGEKFDDE-NFILKRIRPGILSMAKAGPNTNGSQFFICTAKTEWLIGKHV 127

Query: 608 VFGRVTKGMEVVQRISNV-KVNPKTDK 633
           VFG+V +GM +V+ +      N KT K
Sbjct: 128 VFGKVKEGMNIVEAMEPFGSRNGKTSK 154


>gi|178057341 peptidylprolyl isomerase A (cyclophilin A)-like 4G
           [Homo sapiens]
          Length = 164

 Score =  105 bits (262), Expect = 1e-22
 Identities = 65/139 (46%), Positives = 81/139 (58%), Gaps = 6/139 (4%)

Query: 500 MGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPTG-TGMGGE 555
           +G I  K F  + PKT ENF   S    G+ Y G  FHRII GFM Q GD T   G G +
Sbjct: 17  LGRISIKQFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTHPNGTGDK 76

Query: 556 SIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKG 615
           SI+G +F+DE +   +H     LSMANAG NTNGSQFFI    T WLD KH  FG+V + 
Sbjct: 77  SIYGEKFDDE-NLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKVKER 135

Query: 616 MEVVQRISNVKV-NPKTDK 633
           + +V+ + +    N KT K
Sbjct: 136 VNIVEAMEHFGYRNSKTSK 154


>gi|219842199 peptidylprolyl isomerase A (cyclophilin A)-like 4B
           [Homo sapiens]
          Length = 164

 Score =  103 bits (258), Expect = 4e-22
 Identities = 65/139 (46%), Positives = 81/139 (58%), Gaps = 6/139 (4%)

Query: 500 MGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPTG-TGMGGE 555
           +G I  KLF  +  KT ENF   S    G+ Y G  FHRII GFM Q GD T   G G +
Sbjct: 17  LGRISIKLFADKILKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRHNGTGDK 76

Query: 556 SIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKG 615
           SI+G +F+DE +   +H     LSMANAG NTNGSQFFI    T WLD KH  FG+V + 
Sbjct: 77  SIYGEKFDDE-NLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKER 135

Query: 616 MEVVQRISNVKV-NPKTDK 633
           + +V+ + +    N KT K
Sbjct: 136 VNIVEAMEHFGYRNSKTSK 154


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,691,151
Number of Sequences: 37866
Number of extensions: 1129894
Number of successful extensions: 4056
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 3596
Number of HSP's gapped (non-prelim): 389
length of query: 646
length of database: 18,247,518
effective HSP length: 109
effective length of query: 537
effective length of database: 14,120,124
effective search space: 7582506588
effective search space used: 7582506588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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