Search of human proteins with 24307959

Search of human proteins with 24307959

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|24307959 RNA-binding protein pippin [Homo sapiens]
         (153 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|24307959 RNA-binding protein pippin [Homo sapiens]                 326   5e-90
gi|109715854 calcium-regulated heat-stable protein 1 [Homo sapiens]   192   1e-49
gi|109715858 calcium-regulated heat-stable protein 1 [Homo sapiens]   192   1e-49
gi|34098946 nuclease sensitive element binding protein 1 [Homo s...    33   0.073
gi|7662208 GTPase regulator associated with the focal adhesion k...    32   0.16 
gi|13435127 TRAF3-interacting JNK-activating modulator [Homo sap...    32   0.16 
gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Ho...    32   0.28 
gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Ho...    32   0.28 
gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Ho...    32   0.28 
gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Hom...    32   0.28 
gi|224586884 cold shock domain protein A isoform b [Homo sapiens]      32   0.28 
gi|224586882 cold shock domain protein A isoform a [Homo sapiens]      32   0.28 
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    32   0.28 
gi|224586855 sorbin and SH3 domain containing 2 isoform 8 [Homo ...    30   0.62 
gi|224586853 sorbin and SH3 domain containing 2 isoform 7 [Homo ...    30   0.62 
gi|224586851 sorbin and SH3 domain containing 2 isoform 6 [Homo ...    30   0.62 
gi|224586849 sorbin and SH3 domain containing 2 isoform 5 [Homo ...    30   0.62 
gi|224586846 sorbin and SH3 domain containing 2 isoform 4 [Homo ...    30   0.62 
gi|224586844 sorbin and SH3 domain containing 2 isoform 3 [Homo ...    30   0.62 
gi|10947118 sorbin and SH3 domain containing 2 isoform 2 [Homo s...    30   0.62 
gi|194733749 sorbin and SH3 domain containing 2 isoform 1 [Homo ...    30   0.62 
gi|193290160 CTAGE family, member 4 [Homo sapiens]                     30   0.81 
gi|224586773 hypothetical protein LOC643854 [Homo sapiens]             30   0.81 
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s...    30   0.81 
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s...    30   0.81 
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s...    30   0.81 
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap...    30   0.81 
gi|156415990 Y box binding protein 2 [Homo sapiens]                    30   0.81 
gi|239752588 PREDICTED: hypothetical protein XP_002348309, parti...    30   1.1  
gi|146262005 CTAGE family, member 6 [Homo sapiens]                     30   1.1  

>gi|24307959 RNA-binding protein pippin [Homo sapiens]
          Length = 153

 Score =  326 bits (835), Expect = 5e-90
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MTSESTSPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSAT 60
           MTSESTSPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSAT
Sbjct: 1   MTSESTSPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSAT 60

Query: 61  ARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPI 120
           ARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPI
Sbjct: 61  ARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPI 120

Query: 121 PPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS 153
           PPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS
Sbjct: 121 PPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS 153


>gi|109715854 calcium-regulated heat-stable protein 1 [Homo sapiens]
          Length = 147

 Score =  192 bits (487), Expect = 1e-49
 Identities = 97/151 (64%), Positives = 110/151 (72%), Gaps = 5/151 (3%)

Query: 3   SESTSPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSATAR 62
           S    PP  PP H     +  T P  RE S    RG V    +PSPLPT+RTRT+SAT R
Sbjct: 2   SSEPPPPPQPPTHQASVGLLDT-PRSRERSPSPLRGNV----VPSPLPTRRTRTFSATVR 56

Query: 63  ASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPIPP 122
           AS GPV+KGVCK F RS+GHGFITP +G  DIF+H+SD+EGEYVPVEGDEVTYKMC IPP
Sbjct: 57  ASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPP 116

Query: 123 KNQKFQAVEVVLTQLAPHTPHETWSGQVVGS 153
           KN+K QAVEVV+T LAP T HETWSG V+ S
Sbjct: 117 KNEKLQAVEVVITHLAPGTKHETWSGHVISS 147


>gi|109715858 calcium-regulated heat-stable protein 1 [Homo sapiens]
          Length = 147

 Score =  192 bits (487), Expect = 1e-49
 Identities = 97/151 (64%), Positives = 110/151 (72%), Gaps = 5/151 (3%)

Query: 3   SESTSPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSATAR 62
           S    PP  PP H     +  T P  RE S    RG V    +PSPLPT+RTRT+SAT R
Sbjct: 2   SSEPPPPPQPPTHQASVGLLDT-PRSRERSPSPLRGNV----VPSPLPTRRTRTFSATVR 56

Query: 63  ASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPIPP 122
           AS GPV+KGVCK F RS+GHGFITP +G  DIF+H+SD+EGEYVPVEGDEVTYKMC IPP
Sbjct: 57  ASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPP 116

Query: 123 KNQKFQAVEVVLTQLAPHTPHETWSGQVVGS 153
           KN+K QAVEVV+T LAP T HETWSG V+ S
Sbjct: 117 KNEKLQAVEVVITHLAPGTKHETWSGHVISS 147


>gi|34098946 nuclease sensitive element binding protein 1 [Homo
           sapiens]
          Length = 324

 Score = 33.5 bits (75), Expect = 0.073
 Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 12/100 (12%)

Query: 3   SESTSPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSATAR 62
           +E+  PP  PP  +P      T P    G+     G   P  L S  P    +   AT  
Sbjct: 5   AETQQPPAAPPA-APALSAADTKP----GTTGSGAGSGGPGGLTSAAPAGGDKKVIATK- 58

Query: 63  ASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIE 102
                   G  K F+   G+GFI   +  ED+FVH + I+
Sbjct: 59  ------VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 92


>gi|7662208 GTPase regulator associated with the focal adhesion
           kinase pp125 isoform a [Homo sapiens]
          Length = 814

 Score = 32.3 bits (72), Expect = 0.16
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 14/67 (20%)

Query: 6   TSPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSATARASA 65
           T P  +PP  SP SP+ P++P     S              SP+PT  T + S+  R+ A
Sbjct: 658 TRPNSLPPNPSPTSPLSPSWPMFSAPS--------------SPMPTSSTSSDSSPVRSVA 703

Query: 66  GPVFKGV 72
           G V+  V
Sbjct: 704 GFVWFSV 710


>gi|13435127 TRAF3-interacting JNK-activating modulator [Homo
           sapiens]
          Length = 531

 Score = 32.3 bits (72), Expect = 0.16
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 6   TSPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSATARASA 65
           TS  V P  H P S +      H       + GG+PP+D P   P K  R    T   + 
Sbjct: 99  TSSEVFPAQHPPPSGICRDLSDHLSS----QAGGLPPQDTPIKKPPKHHR---GTQTKAE 151

Query: 66  GPVFKGVCKQ 75
           GP  K    Q
Sbjct: 152 GPTIKNDASQ 161


>gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Homo
           sapiens]
          Length = 559

 Score = 31.6 bits (70), Expect = 0.28
 Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 8   PPVVPPLHSPK------SPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYS-AT 60
           PP+ PPL  P       +PV  T P H       E  G+PP   P PLP    R  S  T
Sbjct: 387 PPIAPPLVQPSPPVARAAPVCETVPVHPLPQ--GEVQGLPPPPPPPPLPPPGIRPSSPVT 444

Query: 61  ARASAGP 67
             A A P
Sbjct: 445 VTALAHP 451


>gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Homo
           sapiens]
          Length = 559

 Score = 31.6 bits (70), Expect = 0.28
 Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 8   PPVVPPLHSPK------SPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYS-AT 60
           PP+ PPL  P       +PV  T P H       E  G+PP   P PLP    R  S  T
Sbjct: 387 PPIAPPLVQPSPPVARAAPVCETVPVHPLPQ--GEVQGLPPPPPPPPLPPPGIRPSSPVT 444

Query: 61  ARASAGP 67
             A A P
Sbjct: 445 VTALAHP 451


>gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Homo
           sapiens]
          Length = 559

 Score = 31.6 bits (70), Expect = 0.28
 Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 8   PPVVPPLHSPK------SPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYS-AT 60
           PP+ PPL  P       +PV  T P H       E  G+PP   P PLP    R  S  T
Sbjct: 387 PPIAPPLVQPSPPVARAAPVCETVPVHPLPQ--GEVQGLPPPPPPPPLPPPGIRPSSPVT 444

Query: 61  ARASAGP 67
             A A P
Sbjct: 445 VTALAHP 451


>gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Homo
           sapiens]
          Length = 559

 Score = 31.6 bits (70), Expect = 0.28
 Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 8   PPVVPPLHSPK------SPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYS-AT 60
           PP+ PPL  P       +PV  T P H       E  G+PP   P PLP    R  S  T
Sbjct: 387 PPIAPPLVQPSPPVARAAPVCETVPVHPLPQ--GEVQGLPPPPPPPPLPPPGIRPSSPVT 444

Query: 61  ARASAGP 67
             A A P
Sbjct: 445 VTALAHP 451


>gi|224586884 cold shock domain protein A isoform b [Homo sapiens]
          Length = 303

 Score = 31.6 bits (70), Expect = 0.28
 Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 16  SPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSATARASAGPVFK----- 70
           +PKSPV    P     +      G P  D              ATA  S     K     
Sbjct: 31  APKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEKKVLATK 90

Query: 71  --GVCKQFSRSQGHGFITPENGSEDIFVHVSDIE 102
             G  K F+   G+GFI   +  ED+FVH + I+
Sbjct: 91  VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 124


>gi|224586882 cold shock domain protein A isoform a [Homo sapiens]
          Length = 372

 Score = 31.6 bits (70), Expect = 0.28
 Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 16  SPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSATARASAGPVFK----- 70
           +PKSPV    P     +      G P  D              ATA  S     K     
Sbjct: 31  APKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEKKVLATK 90

Query: 71  --GVCKQFSRSQGHGFITPENGSEDIFVHVSDIE 102
             G  K F+   G+GFI   +  ED+FVH + I+
Sbjct: 91  VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 124


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
           sapiens]
          Length = 2715

 Score = 31.6 bits (70), Expect = 0.28
 Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 18/88 (20%)

Query: 5   STSPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSATARAS 64
           S  PP+ PP  SP  P+ P                 PP   P PLP+            S
Sbjct: 412 SPPPPLPPPSTSPPPPLCPP---------------PPPPVSPPPLPSPPPPPAQEEQEES 456

Query: 65  AGPVFKGVCKQFSRSQGHGFITPENGSE 92
             PV    C   SR +G   +TP   +E
Sbjct: 457 PPPVVPATC---SRKRGRPPLTPSQRAE 481


>gi|224586855 sorbin and SH3 domain containing 2 isoform 8 [Homo
           sapiens]
          Length = 492

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 40  VPPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVH 97
           VPP  +P P+P  R R  S+T +    P  + V  +  RS+       E G   I  H
Sbjct: 87  VPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQH 144


>gi|224586853 sorbin and SH3 domain containing 2 isoform 7 [Homo
           sapiens]
          Length = 1004

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 40  VPPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVH 97
           VPP  +P P+P  R R  S+T +    P  + V  +  RS+       E G   I  H
Sbjct: 72  VPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQH 129


>gi|224586851 sorbin and SH3 domain containing 2 isoform 6 [Homo
           sapiens]
          Length = 824

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 40  VPPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVH 97
           VPP  +P P+P  R R  S+T +    P  + V  +  RS+       E G   I  H
Sbjct: 347 VPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQH 404


>gi|224586849 sorbin and SH3 domain containing 2 isoform 5 [Homo
           sapiens]
          Length = 661

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 40  VPPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVH 97
           VPP  +P P+P  R R  S+T +    P  + V  +  RS+       E G   I  H
Sbjct: 237 VPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQH 294


>gi|224586846 sorbin and SH3 domain containing 2 isoform 4 [Homo
           sapiens]
          Length = 731

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 40  VPPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVH 97
           VPP  +P P+P  R R  S+T +    P  + V  +  RS+       E G   I  H
Sbjct: 254 VPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQH 311


>gi|224586844 sorbin and SH3 domain containing 2 isoform 3 [Homo
           sapiens]
          Length = 644

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 40  VPPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVH 97
           VPP  +P P+P  R R  S+T +    P  + V  +  RS+       E G   I  H
Sbjct: 239 VPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQH 296


>gi|10947118 sorbin and SH3 domain containing 2 isoform 2 [Homo
           sapiens]
          Length = 1100

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 40  VPPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVH 97
           VPP  +P P+P  R R  S+T +    P  + V  +  RS+       E G   I  H
Sbjct: 168 VPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQH 225


>gi|194733749 sorbin and SH3 domain containing 2 isoform 1 [Homo
           sapiens]
          Length = 666

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 40  VPPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVH 97
           VPP  +P P+P  R R  S+T +    P  + V  +  RS+       E G   I  H
Sbjct: 214 VPPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQH 271


>gi|193290160 CTAGE family, member 4 [Homo sapiens]
          Length = 777

 Score = 30.0 bits (66), Expect = 0.81
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 14/60 (23%)

Query: 3   SESTSPPVVP----PLHSPKSPVWPTFPFHREGSRV----------WERGGVPPRDLPSP 48
           +E+T P ++P    P+  P  PV    PF R G               RG  PPRD P P
Sbjct: 686 NEATGPGLIPPPLAPISGPLFPVDTRGPFMRRGPPFPPPPPGTMFGASRGYFPPRDFPGP 745


>gi|224586773 hypothetical protein LOC643854 [Homo sapiens]
          Length = 777

 Score = 30.0 bits (66), Expect = 0.81
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 14/60 (23%)

Query: 3   SESTSPPVVP----PLHSPKSPVWPTFPFHREGSRV----------WERGGVPPRDLPSP 48
           +E+T P ++P    P+  P  PV    PF R G               RG  PPRD P P
Sbjct: 686 NEATGPGLIPPPLAPISGPLFPVDTRGPFMRRGPPFPPPPPGTMFGASRGYFPPRDFPGP 745


>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
           sapiens]
          Length = 600

 Score = 30.0 bits (66), Expect = 0.81
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 12  PPLHS-PKSPVWPTFPFHREGSRVWERGGVPPR 43
           PPL   P  P  P  P  R G R  +RGG PPR
Sbjct: 412 PPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPR 444


>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
           sapiens]
          Length = 655

 Score = 30.0 bits (66), Expect = 0.81
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 12  PPLHS-PKSPVWPTFPFHREGSRVWERGGVPPR 43
           PPL   P  P  P  P  R G R  +RGG PPR
Sbjct: 467 PPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPR 499


>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
           sapiens]
          Length = 661

 Score = 30.0 bits (66), Expect = 0.81
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 12  PPLHS-PKSPVWPTFPFHREGSRVWERGGVPPR 43
           PPL   P  P  P  P  R G R  +RGG PPR
Sbjct: 473 PPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPR 505


>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
           sapiens]
          Length = 656

 Score = 30.0 bits (66), Expect = 0.81
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 12  PPLHS-PKSPVWPTFPFHREGSRVWERGGVPPR 43
           PPL   P  P  P  P  R G R  +RGG PPR
Sbjct: 468 PPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPR 500


>gi|156415990 Y box binding protein 2 [Homo sapiens]
          Length = 364

 Score = 30.0 bits (66), Expect = 0.81
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 71  GVCKQFSRSQGHGFITPENGSEDIFVHVSDIE 102
           G  K F+   G+GFI   +  ED+FVH + I+
Sbjct: 96  GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 127


>gi|239752588 PREDICTED: hypothetical protein XP_002348309, partial
           [Homo sapiens]
          Length = 327

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 9   PVVPP--LHSPKSPVWPTFPFHREGSRVWERGGVP 41
           P +P   L  P++P WP  P   +  R W+R G+P
Sbjct: 149 PALPEGALSHPQAPRWPPNPGKSQEDRDWQRDGLP 183


>gi|146262005 CTAGE family, member 6 [Homo sapiens]
          Length = 777

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 10/51 (19%)

Query: 8   PPVVPPLHSPKSPVWPTFPFHREGSRV----------WERGGVPPRDLPSP 48
           PP + P+  P  PV    PF R G               RG  PPRD P P
Sbjct: 695 PPPLAPVRGPLFPVDTRGPFMRRGPPFPPPPPGTMFGASRGYFPPRDFPGP 745


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.133    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,574,262
Number of Sequences: 37866
Number of extensions: 391844
Number of successful extensions: 1245
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 119
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.