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Search of human proteins with 24234756
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24234756 interleukin enhancer binding factor 3 isoform c
[Homo sapiens]
(690 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24234756 interleukin enhancer binding factor 3 isoform c [Hom... 1382 0.0
gi|24234753 interleukin enhancer binding factor 3 isoform b [Hom... 1377 0.0
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom... 1376 0.0
gi|212549555 interleukin enhancer binding factor 3 isoform e [Ho... 1371 0.0
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho... 1370 0.0
gi|21361745 spermatid perinuclear RNA binding protein [Homo sapi... 723 0.0
gi|34101286 zinc finger RNA binding protein [Homo sapiens] 366 e-101
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 342 5e-94
gi|237681091 RNA-specific adenosine deaminase B1 isoform 7 [Homo... 170 5e-42
gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo s... 170 5e-42
gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo s... 170 5e-42
gi|4501919 RNA-specific adenosine deaminase B1 isoform 1 [Homo s... 170 5e-42
gi|8922077 adenosine deaminase, RNA-specific, B2 [Homo sapiens] 129 1e-29
gi|24234747 interleukin enhancer binding factor 2 [Homo sapiens] 101 2e-21
gi|7657625 staufen homolog 2 [Homo sapiens] 65 2e-10
gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo sa... 64 5e-10
gi|70167113 adenosine deaminase, RNA-specific isoform d [Homo sa... 63 8e-10
gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo sa... 63 8e-10
gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo sa... 63 8e-10
gi|82659089 staufen isoform a [Homo sapiens] 60 5e-09
gi|82659087 staufen isoform b [Homo sapiens] 60 5e-09
gi|82659085 staufen isoform a [Homo sapiens] 60 5e-09
gi|82659083 staufen isoform a [Homo sapiens] 60 5e-09
gi|19743838 TAR RNA binding protein 2 isoform b [Homo sapiens] 59 2e-08
gi|19743840 TAR RNA binding protein 2 isoform a [Homo sapiens] 59 2e-08
gi|85068512 TAR RNA binding protein 2 isoform b [Homo sapiens] 59 2e-08
gi|82659091 staufen isoform c [Homo sapiens] 57 4e-08
gi|208431829 eukaryotic translation initiation factor 2-alpha ki... 47 6e-05
gi|208431827 eukaryotic translation initiation factor 2-alpha ki... 47 6e-05
gi|4506103 eukaryotic translation initiation factor 2-alpha kina... 47 6e-05
>gi|24234756 interleukin enhancer binding factor 3 isoform c [Homo
sapiens]
Length = 690
Score = 1382 bits (3578), Expect = 0.0
Identities = 690/690 (100%), Positives = 690/690 (100%)
Query: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA
Sbjct: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
Query: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP
Sbjct: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
Query: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM
Sbjct: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
Query: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV
Sbjct: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
Query: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT
Sbjct: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
Query: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP
Sbjct: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
Query: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL
Sbjct: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
Query: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE
Sbjct: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
Query: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLK 540
DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLK
Sbjct: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLK 540
Query: 541 YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANK 600
YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANK
Sbjct: 541 YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANK 600
Query: 601 KKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRGFGGA 660
KKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRGFGGA
Sbjct: 601 KKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRGFGGA 660
Query: 661 NHGGYMNAGAGYGSYGYGGNSATAGYTGFV 690
NHGGYMNAGAGYGSYGYGGNSATAGYTGFV
Sbjct: 661 NHGGYMNAGAGYGSYGYGGNSATAGYTGFV 690
>gi|24234753 interleukin enhancer binding factor 3 isoform b [Homo
sapiens]
Length = 702
Score = 1377 bits (3563), Expect = 0.0
Identities = 687/689 (99%), Positives = 688/689 (99%)
Query: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA
Sbjct: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
Query: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP
Sbjct: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
Query: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM
Sbjct: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
Query: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV
Sbjct: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
Query: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT
Sbjct: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
Query: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP
Sbjct: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
Query: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL
Sbjct: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
Query: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE
Sbjct: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
Query: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLK 540
DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLK
Sbjct: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLK 540
Query: 541 YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANK 600
YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANK
Sbjct: 541 YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANK 600
Query: 601 KKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRGFGGA 660
KKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRGFGGA
Sbjct: 601 KKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRGFGGA 660
Query: 661 NHGGYMNAGAGYGSYGYGGNSATAGYTGF 689
NHGGYMNAGAGYGSYGYGGNSATAGY+ F
Sbjct: 661 NHGGYMNAGAGYGSYGYGGNSATAGYSDF 689
>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
sapiens]
Length = 894
Score = 1376 bits (3562), Expect = 0.0
Identities = 687/689 (99%), Positives = 688/689 (99%)
Query: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA
Sbjct: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
Query: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP
Sbjct: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
Query: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM
Sbjct: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
Query: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV
Sbjct: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
Query: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT
Sbjct: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
Query: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP
Sbjct: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
Query: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL
Sbjct: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
Query: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE
Sbjct: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
Query: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLK 540
DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLK
Sbjct: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLK 540
Query: 541 YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANK 600
YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANK
Sbjct: 541 YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANK 600
Query: 601 KKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRGFGGA 660
KKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRGFGGA
Sbjct: 601 KKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRGFGGA 660
Query: 661 NHGGYMNAGAGYGSYGYGGNSATAGYTGF 689
NHGGYMNAGAGYGSYGYGGNSATAGY+ F
Sbjct: 661 NHGGYMNAGAGYGSYGYGGNSATAGYSQF 689
Score = 30.0 bits (66), Expect = 7.5
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 609 RGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRGFGGANHGGYMNA 668
+G ++ ++PG G G + E + G GG+ G G G + +HGGY
Sbjct: 781 QGSYSYSNSYNSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGSG-GASYNPGSHGGYGGG 839
Query: 669 GAGYGSY-GYGGNSATAGY 686
G SY G G + + Y
Sbjct: 840 SGGGSSYQGKQGGYSQSNY 858
>gi|212549555 interleukin enhancer binding factor 3 isoform e [Homo
sapiens]
Length = 706
Score = 1371 bits (3548), Expect = 0.0
Identities = 687/693 (99%), Positives = 688/693 (99%), Gaps = 4/693 (0%)
Query: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA
Sbjct: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
Query: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP
Sbjct: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
Query: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM
Sbjct: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
Query: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV
Sbjct: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
Query: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT
Sbjct: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
Query: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP
Sbjct: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
Query: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL
Sbjct: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
Query: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE
Sbjct: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
Query: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAE----QGPILTKHGKNPVMELNEKR 536
DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAE QGPILTKHGKNPVMELNEKR
Sbjct: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKR 540
Query: 537 RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL 596
RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL
Sbjct: 541 RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL 600
Query: 597 DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG 656
DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG
Sbjct: 601 DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG 660
Query: 657 FGGANHGGYMNAGAGYGSYGYGGNSATAGYTGF 689
FGGANHGGYMNAGAGYGSYGYGGNSATAGY+ F
Sbjct: 661 FGGANHGGYMNAGAGYGSYGYGGNSATAGYSDF 693
>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
sapiens]
Length = 898
Score = 1370 bits (3547), Expect = 0.0
Identities = 687/693 (99%), Positives = 688/693 (99%), Gaps = 4/693 (0%)
Query: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA
Sbjct: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
Query: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP
Sbjct: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
Query: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM
Sbjct: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
Query: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV
Sbjct: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
Query: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT
Sbjct: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
Query: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP
Sbjct: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
Query: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL
Sbjct: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
Query: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE
Sbjct: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
Query: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAE----QGPILTKHGKNPVMELNEKR 536
DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAE QGPILTKHGKNPVMELNEKR
Sbjct: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKR 540
Query: 537 RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL 596
RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL
Sbjct: 541 RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL 600
Query: 597 DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG 656
DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG
Sbjct: 601 DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG 660
Query: 657 FGGANHGGYMNAGAGYGSYGYGGNSATAGYTGF 689
FGGANHGGYMNAGAGYGSYGYGGNSATAGY+ F
Sbjct: 661 FGGANHGGYMNAGAGYGSYGYGGNSATAGYSQF 693
Score = 30.0 bits (66), Expect = 7.5
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 609 RGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRGFGGANHGGYMNA 668
+G ++ ++PG G G + E + G GG+ G G G + +HGGY
Sbjct: 785 QGSYSYSNSYNSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGSG-GASYNPGSHGGYGGG 843
Query: 669 GAGYGSY-GYGGNSATAGY 686
G SY G G + + Y
Sbjct: 844 SGGGSSYQGKQGGYSQSNY 862
>gi|21361745 spermatid perinuclear RNA binding protein [Homo
sapiens]
Length = 672
Score = 723 bits (1866), Expect = 0.0
Identities = 398/684 (58%), Positives = 490/684 (71%), Gaps = 51/684 (7%)
Query: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
MR +R F NDDRHVM KHS++YP+ EELEAVQNMVS E ALK VSDW+DE KG+ +
Sbjct: 1 MRSIRSFANDDRHVMVKHSTIYPSPEELEAVQNMVSTVECALKHVSDWLDETNKGTKTEG 60
Query: 61 ESD-NMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEK 119
E++ D E+ SK+ G RTL GVMR+GLVAKGLL+K D+DLELVL+CK+K
Sbjct: 61 ETEVKKDEAGENYSKDQGG--------RTLCGVMRIGLVAKGLLIKDDMDLELVLMCKDK 112
Query: 120 PTTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREE 179
PT LL+ V DNL IQ+ +TE+KY++ Q V++A+I+I+NTKEP L+L + LTSP++R+E
Sbjct: 113 PTETLLNTVKDNLPIQIQKLTEEKYQVEQCVNEASIIIRNTKEPTLTLKVILTSPLIRDE 172
Query: 180 MEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTR 239
+EK GE +S+ DPPD+LDRQKCL ALASLRHAKWFQARANGLKSCVIV+R+LRDLC R
Sbjct: 173 LEKK-DGENVSMKDPPDLLDRQKCLNALASLRHAKWFQARANGLKSCVIVLRILRDLCNR 231
Query: 240 VPTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEA 299
VPTW PL+GWPLEL+CEKSIGT NRP+GAGEALRRV+ECLASGI++P G G++DPCE++
Sbjct: 232 VPTWAPLKGWPLELICEKSIGTCNRPLGAGEALRRVMECLASGILLPGGPGLHDPCERDP 291
Query: 300 TDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQI 359
TDA+ ++ QQ+EDIT SAQHALRL+AFGQ++KVL MDPLPS P + Y+ +
Sbjct: 292 TDALSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPSSKPFQ-------KYSWSV 344
Query: 360 PPSTTYAITPMKRPMEED-GEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQY 418
+ +KRP E+ G++K P+KK K+ +K ++ MNALMRLNQ++PGLQY
Sbjct: 345 TDKEGAGSSALKRPFEDGLGDDKDPNKKMKRNLRKILDSKAIDLMNALMRLNQIRPGLQY 404
Query: 419 KLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSK 478
KL+SQ+GPVHAP+FTMSV+VDG ++EASGPSKKTAKLHVAVKVLQ MG PTG +
Sbjct: 405 KLLSQSGPVHAPVFTMSVDVDGTTYEASGPSKKTAKLHVAVKVLQAMGYPTGFDADIECM 464
Query: 479 GEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAE---QGPILTKHGKNPVMELNEK 535
D + E+K V+ + +T ++ + +T E QGPILT GKNPVMELNEK
Sbjct: 465 SSDEKSDNESKNETVSSN---SSNNTGNSTTETSSTLEVRTQGPILTASGKNPVMELNEK 521
Query: 536 RRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLA 595
RRGLKYELISETGGSHDKRFVMEVEVDGQKF+GAG NKKVAKA AALAALEKLF P A
Sbjct: 522 RRGLKYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAALAALEKLF-SGPNA 580
Query: 596 LDANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGR 655
AN KK+ +P G A +RGRGRG RG
Sbjct: 581 --ANNKKKKIIPQAKGVVNTAVS---------------AAVQAVRGRGRGTLTRG----- 618
Query: 656 GFGGANHG-GYMNAGAGYGS-YGY 677
F GA GY+ GYG+ YGY
Sbjct: 619 AFVGATAAPGYI--APGYGTPYGY 640
>gi|34101286 zinc finger RNA binding protein [Homo sapiens]
Length = 1074
Score = 366 bits (940), Expect = e-101
Identities = 186/334 (55%), Positives = 243/334 (72%), Gaps = 21/334 (6%)
Query: 9 NDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQAESDNMDVP 68
+DDR+VM KH+++YPT+EEL+AVQ +VS TERALK VSD + E EK +++
Sbjct: 722 SDDRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSDSLSEHEKNKNKEG-------- 773
Query: 69 PEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKPTTALLDKV 128
DD KEG + R L+GV+RVG++AKGLLL+GD ++ LVLLC EKP+ LL ++
Sbjct: 774 --DDKKEGGKD-------RALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKTLLSRI 824
Query: 129 ADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGET 188
A+NL QLA ++ +KY+I +V +AAI++ + EP + +TI LTSP++REE + G+
Sbjct: 825 AENLPKQLAVISPEKYDIKCAVSEAAIILNSCVEPKMQVTITLTSPIIREE--NMREGDV 882
Query: 189 LS--VNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPL 246
S V DPPDVLDRQKCL ALA+LRHAKWFQARANGL+SCVI+IR+LRDLC RVPTW
Sbjct: 883 TSGMVKDPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSDF 942
Query: 247 RGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEATDAIGHL 306
W +ELL EK+I +A+ P G+ALRRV EC++SGI++ G+ DPCEK+ D + +
Sbjct: 943 PSWAMELLVEKAISSASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATM 1002
Query: 307 DRQQREDITQSAQHALRLAAFGQLHKVLGMDPLP 340
QQREDIT SAQ ALRL AF Q+HKVLGMDPLP
Sbjct: 1003 TDQQREDITSSAQFALRLLAFRQIHKVLGMDPLP 1036
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 342 bits (878), Expect = 5e-94
Identities = 177/334 (52%), Positives = 235/334 (70%), Gaps = 17/334 (5%)
Query: 9 NDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQAESDNMDVP 68
+DDRHVM KH+++YPT++EL AVQ VSH ERALK VSD + E+++G E+ V
Sbjct: 588 SDDRHVMCKHATIYPTEQELLAVQRAVSHAERALKLVSDTLAEEDRGRREEEGDKRSSVA 647
Query: 69 PEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKPTTALLDKV 128
P+ TR L+GVMRVG++AKGLLL+GD ++ L LLC EKPT +LL ++
Sbjct: 648 PQ---------------TRVLKGVMRVGILAKGLLLRGDRNVRLALLCSEKPTHSLLRRI 692
Query: 129 ADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGET 188
A L QL VTED+YE+ S +A IVI + +EP + +TI +TSP++RE+ E
Sbjct: 693 AQQLPRQLQMVTEDEYEV-SSDPEANIVISSCEEPRMQVTISVTSPLMREDPSTDPGVEE 751
Query: 189 LSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRG 248
D DVL +KCL +LA+LRHA+WFQARA+GL+ CVIVIRVLRDLC RVPTWG L
Sbjct: 752 PQA-DAGDVLSPKKCLESLAALRHARWFQARASGLQPCVIVIRVLRDLCRRVPTWGALPA 810
Query: 249 WPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEATDAIGHLDR 308
W +ELL EK++ +A P+G G+A+RRVLEC+A+G ++ DG G+ DPCE++ TDA+ +
Sbjct: 811 WAMELLVEKAVSSAAGPLGPGDAVRRVLECVATGTLLTDGPGLQDPCERDQTDALEPMTL 870
Query: 309 QQREDITQSAQHALRLAAFGQLHKVLGMDPLPSK 342
Q+RED+T SAQHALR+ AF Q HKVLGMD LP +
Sbjct: 871 QEREDVTASAQHALRMLAFRQTHKVLGMDLLPPR 904
>gi|237681091 RNA-specific adenosine deaminase B1 isoform 7 [Homo
sapiens]
Length = 674
Score = 170 bits (430), Expect = 5e-42
Identities = 115/271 (42%), Positives = 150/271 (55%), Gaps = 39/271 (14%)
Query: 371 KRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAP 430
KRP+EE S K +++K+ + P NALM+LN++KPGLQY L+SQTGPVHAP
Sbjct: 52 KRPLEEGSNGHS----KYRLKKRRKTPGPVLPKNALMQLNEIKPGLQYTLLSQTGPVHAP 107
Query: 431 IFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQD-MGLPTGAE-----GRDSSKGEDSAE 484
+F MSVEV+G FE SGP+KK AKLH A K L+ + P +E GR S D
Sbjct: 108 LFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Query: 485 E---------------TEAKPAVVAPAPVVEAVSTPS----AAFPSDATAEQGPILT--- 522
+ +A+P + ++ S+ +A P A+ Q P+
Sbjct: 168 DQADFPDTLFNGFETPDKAEPPFYVGSNGDDSFSSSGDLSLSASPVPASLAQPPLPVLPP 227
Query: 523 ---KHGKNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAY 579
GKNPVM LNE R GLKY+ +SE+G SH K FVM V VDGQ F+G+G NKK+AKA
Sbjct: 228 FPPPSGKNPVMILNELRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKAR 287
Query: 580 AALAALEKLFPDTPLALDANKKKRAPVPVRG 610
AA +AL +F L LD R P+P G
Sbjct: 288 AAQSALAAIF---NLHLD-QTPSRQPIPSEG 314
>gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo
sapiens]
Length = 714
Score = 170 bits (430), Expect = 5e-42
Identities = 115/271 (42%), Positives = 150/271 (55%), Gaps = 39/271 (14%)
Query: 371 KRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAP 430
KRP+EE S K +++K+ + P NALM+LN++KPGLQY L+SQTGPVHAP
Sbjct: 52 KRPLEEGSNGHS----KYRLKKRRKTPGPVLPKNALMQLNEIKPGLQYTLLSQTGPVHAP 107
Query: 431 IFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQD-MGLPTGAE-----GRDSSKGEDSAE 484
+F MSVEV+G FE SGP+KK AKLH A K L+ + P +E GR S D
Sbjct: 108 LFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Query: 485 E---------------TEAKPAVVAPAPVVEAVSTPS----AAFPSDATAEQGPILT--- 522
+ +A+P + ++ S+ +A P A+ Q P+
Sbjct: 168 DQADFPDTLFNGFETPDKAEPPFYVGSNGDDSFSSSGDLSLSASPVPASLAQPPLPVLPP 227
Query: 523 ---KHGKNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAY 579
GKNPVM LNE R GLKY+ +SE+G SH K FVM V VDGQ F+G+G NKK+AKA
Sbjct: 228 FPPPSGKNPVMILNELRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKAR 287
Query: 580 AALAALEKLFPDTPLALDANKKKRAPVPVRG 610
AA +AL +F L LD R P+P G
Sbjct: 288 AAQSALAAIF---NLHLD-QTPSRQPIPSEG 314
>gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo
sapiens]
Length = 741
Score = 170 bits (430), Expect = 5e-42
Identities = 115/271 (42%), Positives = 150/271 (55%), Gaps = 39/271 (14%)
Query: 371 KRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAP 430
KRP+EE S K +++K+ + P NALM+LN++KPGLQY L+SQTGPVHAP
Sbjct: 52 KRPLEEGSNGHS----KYRLKKRRKTPGPVLPKNALMQLNEIKPGLQYTLLSQTGPVHAP 107
Query: 431 IFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQD-MGLPTGAE-----GRDSSKGEDSAE 484
+F MSVEV+G FE SGP+KK AKLH A K L+ + P +E GR S D
Sbjct: 108 LFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Query: 485 E---------------TEAKPAVVAPAPVVEAVSTPS----AAFPSDATAEQGPILT--- 522
+ +A+P + ++ S+ +A P A+ Q P+
Sbjct: 168 DQADFPDTLFNGFETPDKAEPPFYVGSNGDDSFSSSGDLSLSASPVPASLAQPPLPVLPP 227
Query: 523 ---KHGKNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAY 579
GKNPVM LNE R GLKY+ +SE+G SH K FVM V VDGQ F+G+G NKK+AKA
Sbjct: 228 FPPPSGKNPVMILNELRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKAR 287
Query: 580 AALAALEKLFPDTPLALDANKKKRAPVPVRG 610
AA +AL +F L LD R P+P G
Sbjct: 288 AAQSALAAIF---NLHLD-QTPSRQPIPSEG 314
>gi|4501919 RNA-specific adenosine deaminase B1 isoform 1 [Homo
sapiens]
Length = 701
Score = 170 bits (430), Expect = 5e-42
Identities = 115/271 (42%), Positives = 150/271 (55%), Gaps = 39/271 (14%)
Query: 371 KRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAP 430
KRP+EE S K +++K+ + P NALM+LN++KPGLQY L+SQTGPVHAP
Sbjct: 52 KRPLEEGSNGHS----KYRLKKRRKTPGPVLPKNALMQLNEIKPGLQYTLLSQTGPVHAP 107
Query: 431 IFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQD-MGLPTGAE-----GRDSSKGEDSAE 484
+F MSVEV+G FE SGP+KK AKLH A K L+ + P +E GR S D
Sbjct: 108 LFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Query: 485 E---------------TEAKPAVVAPAPVVEAVSTPS----AAFPSDATAEQGPILT--- 522
+ +A+P + ++ S+ +A P A+ Q P+
Sbjct: 168 DQADFPDTLFNGFETPDKAEPPFYVGSNGDDSFSSSGDLSLSASPVPASLAQPPLPVLPP 227
Query: 523 ---KHGKNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAY 579
GKNPVM LNE R GLKY+ +SE+G SH K FVM V VDGQ F+G+G NKK+AKA
Sbjct: 228 FPPPSGKNPVMILNELRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKAR 287
Query: 580 AALAALEKLFPDTPLALDANKKKRAPVPVRG 610
AA +AL +F L LD R P+P G
Sbjct: 288 AAQSALAAIF---NLHLD-QTPSRQPIPSEG 314
>gi|8922077 adenosine deaminase, RNA-specific, B2 [Homo sapiens]
Length = 739
Score = 129 bits (323), Expect = 1e-29
Identities = 100/303 (33%), Positives = 147/303 (48%), Gaps = 36/303 (11%)
Query: 337 DPLPSKMPKKPKNENPVDYTVQIPPSTTYAI-----TPMKRPMEEDGEEKSPSKKKKKIQ 391
D L + + +N N + + PPS A KRP+EE K + +
Sbjct: 60 DTLSTSSAEVKENRNVGNLAARPPPSGDRARGGAPGAKRKRPLEEGNG--GHLCKLQLVW 117
Query: 392 KKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKK 451
KK + P+ NAL++L++L+PGLQY+ VSQTGPVHAP+F ++VEV+G +FE +GP+KK
Sbjct: 118 KKLSWSVAPK--NALVQLHELRPGLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTGPTKK 175
Query: 452 TAKLHVAVKVLQD-MGLPTG-----AEGRDSSKGEDSAEETEAKPAVV-------APAPV 498
AK+ A L+ + P A G G D + P + AP P
Sbjct: 176 KAKMRAAELALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQEFEPPAPRPG 235
Query: 499 VEAVSTPSAAFPSDATAEQ----------GPI----LTKHGKNPVMELNEKRRGLKYELI 544
+ AA S A + GP +NPV+ LN R GL+Y +
Sbjct: 236 LAGGRPGDAALLSAAYGRRRLLCRALDLVGPTPATPAAPGERNPVVLLNRLRAGLRYVCL 295
Query: 545 SETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANKKKRA 604
+E + FVM V VDG+ F+G+G +KK+A+ AA AAL++LF + +R
Sbjct: 296 AEPAERRARSFVMAVSVDGRTFEGSGRSKKLARGQAAQAALQELFDIQMPGHAPGRARRT 355
Query: 605 PVP 607
P+P
Sbjct: 356 PMP 358
Score = 55.5 bits (132), Expect = 2e-07
Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 526 KNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAAL 585
KN +++L+E R GL+Y +S+TG H F + VEV+G F+G G KK AK AA AL
Sbjct: 127 KNALVQLHELRPGLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTGPTKKKAKMRAAELAL 186
Query: 586 EKLFPDTPLALDANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPP---PNLRGR 642
+ F P A A+ + + GGP + + E PP P L G
Sbjct: 187 -RSFVQFPNACQAH------LAMGGGPGPGTDFTSDQADFPDTLFQEFEPPAPRPGLAG- 238
Query: 643 GRGG 646
GR G
Sbjct: 239 GRPG 242
>gi|24234747 interleukin enhancer binding factor 2 [Homo sapiens]
Length = 390
Score = 101 bits (252), Expect = 2e-21
Identities = 92/322 (28%), Positives = 148/322 (45%), Gaps = 56/322 (17%)
Query: 92 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQ-----LAAVT-E 141
V +VG KG + G +LV++ K PT AL +KV ++L Q L +T E
Sbjct: 102 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNE 161
Query: 142 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 201
+EI S DA + I T PP L DP LD +
Sbjct: 162 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 196
Query: 202 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 259
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 197 VLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 255
Query: 260 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEATDAIGHLDRQQREDITQSAQ 319
+P+ A RR L+ LA+G+ +P GI DPCE + +Q++ + +AQ
Sbjct: 256 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCYTAQ 315
Query: 320 HALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGE 379
+R+ + G K+LG + S + + + V +TP ++ E+
Sbjct: 316 TLVRILSHGGFRKILGQEGDASYLASEISTWDGV------------IVTPSEKAYEK--- 360
Query: 380 EKSPSKKKKKIQKKEEKAEPPQ 401
P +KK+ +++E EPPQ
Sbjct: 361 ---PPEKKEGEEEEENTEEPPQ 379
>gi|7657625 staufen homolog 2 [Homo sapiens]
Length = 479
Score = 65.1 bits (157), Expect = 2e-10
Identities = 68/256 (26%), Positives = 98/256 (38%), Gaps = 42/256 (16%)
Query: 373 PMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIF 432
P+ E + S K K K+E ++ N + ++++ ++GP H F
Sbjct: 151 PIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNM---PVSFEVIKESGPPHMKSF 207
Query: 433 TMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEETEAKPAV 492
V V S E G SKK +K A VLQ++
Sbjct: 208 VTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL-------------------------KK 242
Query: 493 VAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLK-----YELISET 547
+ P PVVE P + GP + G NP+ L + ++ K Y L+SE
Sbjct: 243 LPPLPVVEKPKLFFKKRPK-TIVKAGPEYGQ-GMNPISRLAQIQQAKKEKEPDYVLLSER 300
Query: 548 GGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANKKKRAPVP 607
G + FVM+V+V + G G NKK+AK AA A L +L L +K
Sbjct: 301 GMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNLQDQLEKTGENK 360
Query: 608 VRGGPKFAAKPHNPGF 623
GPK PGF
Sbjct: 361 GWSGPK-------PGF 369
>gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo
sapiens]
Length = 1181
Score = 63.9 bits (154), Expect = 5e-10
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 29/196 (14%)
Query: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPTGAEGRD 475
++ ++ Q+GP H P F V ++G F A SKK AK A+K + L A+ +D
Sbjct: 520 EFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTI--LLEEAKAKD 577
Query: 476 SSKGEDSAE---ETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMEL 532
S K E+S+ E E++ + P A S S GK+PV L
Sbjct: 578 SGKSEESSHYSTEKESEKTAESQTPTPSATSFFS------------------GKSPVTTL 619
Query: 533 NEKRRGL----KYELISETGGSHDKRFVMEVEVDGQKFQGAGS-NKKVAKAYAALAALEK 587
E L ++ L+S+ G +H+ +F V V Q F + +KKVAK AA A++
Sbjct: 620 LECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKA 679
Query: 588 LFPDTPLALDANKKKR 603
L + ++ ++ + R
Sbjct: 680 LHGEATNSMASDNQVR 695
Score = 48.5 bits (114), Expect = 2e-05
Identities = 53/234 (22%), Positives = 90/234 (38%), Gaps = 52/234 (22%)
Query: 379 EEKSPSKKKKKIQKKEEKAEPPQAMNALMR-----------LNQLKPGLQYKLVSQTGPV 427
EE S +K+ +K E P + + +++L +++L+S+ GP
Sbjct: 582 EESSHYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPA 641
Query: 428 HAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEET 486
H P F V V +F S PSKK AK A + ++ + E +S ++ +
Sbjct: 642 HEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL----HGEATNSMASDNQVRKI 697
Query: 487 EAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRR----GLKYE 542
G ++ NPV L E R +++
Sbjct: 698 -------------------------------GELVRYLNTNPVGGLLEYARSHGFAAEFK 726
Query: 543 LISETGGSHDKRFVMEVEVDGQKFQG-AGSNKKVAKAYAALAALEKLFPDTPLA 595
L+ ++G H+ +FV + +V G+ F +KK K AA AAL L + A
Sbjct: 727 LVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 780
>gi|70167113 adenosine deaminase, RNA-specific isoform d [Homo
sapiens]
Length = 931
Score = 63.2 bits (152), Expect = 8e-10
Identities = 55/181 (30%), Positives = 83/181 (45%), Gaps = 29/181 (16%)
Query: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPTGAEGRD 475
++ ++ Q+GP H P F V ++G F A SKK AK A+K + L A+ +D
Sbjct: 225 EFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTI--LLEEAKAKD 282
Query: 476 SSKGEDSAE---ETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMEL 532
S K E+S+ E E++ + P A S S GK+PV L
Sbjct: 283 SGKSEESSHYSTEKESEKTAESQTPTPSATSFFS------------------GKSPVTTL 324
Query: 533 NEKRRGL----KYELISETGGSHDKRFVMEVEVDGQKFQGAGS-NKKVAKAYAALAALEK 587
E L ++ L+S+ G +H+ +F V V Q F + +KKVAK AA A++
Sbjct: 325 LECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKA 384
Query: 588 L 588
L
Sbjct: 385 L 385
Score = 55.8 bits (133), Expect = 1e-07
Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 33/234 (14%)
Query: 379 EEKSPSKKKKKIQKKEEKAEPPQAMNALMR-----------LNQLKPGLQYKLVSQTGPV 427
EE S +K+ +K E P + + +++L +++L+S+ GP
Sbjct: 287 EESSHYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPA 346
Query: 428 HAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEET 486
H P F V V +F S PSKK AK A + ++ + E +S ++ E
Sbjct: 347 HEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL----HGEATNSMASDNQPE-- 400
Query: 487 EAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRR----GLKYE 542
+ E++ + P + + G ++ NPV L E R +++
Sbjct: 401 ---------GMISESLDNLESMMP-NKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFK 450
Query: 543 LISETGGSHDKRFVMEVEVDGQKFQG-AGSNKKVAKAYAALAALEKLFPDTPLA 595
L+ ++G H+ +FV + +V G+ F +KK K AA AAL L + A
Sbjct: 451 LVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 504
>gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo
sapiens]
Length = 1200
Score = 63.2 bits (152), Expect = 8e-10
Identities = 55/181 (30%), Positives = 83/181 (45%), Gaps = 29/181 (16%)
Query: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPTGAEGRD 475
++ ++ Q+GP H P F V ++G F A SKK AK A+K + L A+ +D
Sbjct: 520 EFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTI--LLEEAKAKD 577
Query: 476 SSKGEDSAE---ETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMEL 532
S K E+S+ E E++ + P A S S GK+PV L
Sbjct: 578 SGKSEESSHYSTEKESEKTAESQTPTPSATSFFS------------------GKSPVTTL 619
Query: 533 NEKRRGL----KYELISETGGSHDKRFVMEVEVDGQKFQGAGS-NKKVAKAYAALAALEK 587
E L ++ L+S+ G +H+ +F V V Q F + +KKVAK AA A++
Sbjct: 620 LECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKA 679
Query: 588 L 588
L
Sbjct: 680 L 680
Score = 55.8 bits (133), Expect = 1e-07
Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 33/234 (14%)
Query: 379 EEKSPSKKKKKIQKKEEKAEPPQAMNALMR-----------LNQLKPGLQYKLVSQTGPV 427
EE S +K+ +K E P + + +++L +++L+S+ GP
Sbjct: 582 EESSHYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPA 641
Query: 428 HAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEET 486
H P F V V +F S PSKK AK A + ++ + E +S ++ E
Sbjct: 642 HEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL----HGEATNSMASDNQPE-- 695
Query: 487 EAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRR----GLKYE 542
+ E++ + P + + G ++ NPV L E R +++
Sbjct: 696 ---------GMISESLDNLESMMP-NKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFK 745
Query: 543 LISETGGSHDKRFVMEVEVDGQKFQG-AGSNKKVAKAYAALAALEKLFPDTPLA 595
L+ ++G H+ +FV + +V G+ F +KK K AA AAL L + A
Sbjct: 746 LVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 799
>gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo
sapiens]
Length = 1226
Score = 63.2 bits (152), Expect = 8e-10
Identities = 55/181 (30%), Positives = 83/181 (45%), Gaps = 29/181 (16%)
Query: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPTGAEGRD 475
++ ++ Q+GP H P F V ++G F A SKK AK A+K + L A+ +D
Sbjct: 520 EFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTI--LLEEAKAKD 577
Query: 476 SSKGEDSAE---ETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMEL 532
S K E+S+ E E++ + P A S S GK+PV L
Sbjct: 578 SGKSEESSHYSTEKESEKTAESQTPTPSATSFFS------------------GKSPVTTL 619
Query: 533 NEKRRGL----KYELISETGGSHDKRFVMEVEVDGQKFQGAGS-NKKVAKAYAALAALEK 587
E L ++ L+S+ G +H+ +F V V Q F + +KKVAK AA A++
Sbjct: 620 LECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKA 679
Query: 588 L 588
L
Sbjct: 680 L 680
Score = 55.8 bits (133), Expect = 1e-07
Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 33/234 (14%)
Query: 379 EEKSPSKKKKKIQKKEEKAEPPQAMNALMR-----------LNQLKPGLQYKLVSQTGPV 427
EE S +K+ +K E P + + +++L +++L+S+ GP
Sbjct: 582 EESSHYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPA 641
Query: 428 HAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEET 486
H P F V V +F S PSKK AK A + ++ + E +S ++ E
Sbjct: 642 HEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL----HGEATNSMASDNQPE-- 695
Query: 487 EAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRR----GLKYE 542
+ E++ + P + + G ++ NPV L E R +++
Sbjct: 696 ---------GMISESLDNLESMMP-NKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFK 745
Query: 543 LISETGGSHDKRFVMEVEVDGQKFQG-AGSNKKVAKAYAALAALEKLFPDTPLA 595
L+ ++G H+ +FV + +V G+ F +KK K AA AAL L + A
Sbjct: 746 LVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 799
>gi|82659089 staufen isoform a [Homo sapiens]
Length = 496
Score = 60.5 bits (145), Expect = 5e-09
Identities = 59/232 (25%), Positives = 96/232 (41%), Gaps = 41/232 (17%)
Query: 369 PMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVH 428
P+ +E +G E ++ K+E Q ++ N + +++ ++GP H
Sbjct: 83 PLPERLEVNGRESE--------EENLNKSEISQVFEIALKRNL---PVNFEVARESGPPH 131
Query: 429 APIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEETEA 488
F V V E G SKK +K + A+ VL+++ ++
Sbjct: 132 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEEL------------------KKLPP 173
Query: 489 KPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNE-----KRRGLKYEL 543
PAV P ++ + P + E G G NP+ L + K + +Y L
Sbjct: 174 LPAVERVKPRIKKKTKP--IVKPQTSPEYG-----QGINPISRLAQIQQAKKEKEPEYTL 226
Query: 544 ISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLA 595
++E G + FVM+V+V +G G+NKKVAK AA LE L P A
Sbjct: 227 LTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQA 278
Score = 51.2 bits (121), Expect = 3e-06
Identities = 55/206 (26%), Positives = 82/206 (39%), Gaps = 47/206 (22%)
Query: 426 PVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVK---VLQDMGLPTGAEGRDSSKGEDS 482
PV ++ + + V G F G +++ AK A K +LQ+ LP E G +S
Sbjct: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLE----VNGRES 95
Query: 483 AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRR-GLKY 541
EE L K + V E+ KR + +
Sbjct: 96 EEEN----------------------------------LNKSEISQVFEIALKRNLPVNF 121
Query: 542 ELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANKK 601
E+ E+G H K FV +V V +G G +KK++K AA+A LE+L PL K
Sbjct: 122 EVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVK 181
Query: 602 KRAPVPVRGGPKFAAKPH-NPGFGMG 626
R ++ K KP +P +G G
Sbjct: 182 PR----IKKKTKPIVKPQTSPEYGQG 203
Score = 43.9 bits (102), Expect = 5e-04
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 385 KKKKKIQKKEEKAEPPQAMNALMRLNQLKPGL-----QYKLVSQTGPVHAPIFTMSVEVD 439
KK K I K + E Q +N + RL Q++ +Y L+++ G F M V+V
Sbjct: 186 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 245
Query: 440 GNSFEASGPSKKTAKLHVAVKVLQDMG--LPTGAEGRDSSKGED 481
++ E +G +KK AK + A +L+ +G +P + + K E+
Sbjct: 246 NHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEE 289
>gi|82659087 staufen isoform b [Homo sapiens]
Length = 577
Score = 60.5 bits (145), Expect = 5e-09
Identities = 59/232 (25%), Positives = 96/232 (41%), Gaps = 41/232 (17%)
Query: 369 PMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVH 428
P+ +E +G E ++ K+E Q ++ N + +++ ++GP H
Sbjct: 164 PLPERLEVNGRESE--------EENLNKSEISQVFEIALKRNL---PVNFEVARESGPPH 212
Query: 429 APIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEETEA 488
F V V E G SKK +K + A+ VL+++ ++
Sbjct: 213 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEEL------------------KKLPP 254
Query: 489 KPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNE-----KRRGLKYEL 543
PAV P ++ + P + E G G NP+ L + K + +Y L
Sbjct: 255 LPAVERVKPRIKKKTKP--IVKPQTSPEYG-----QGINPISRLAQIQQAKKEKEPEYTL 307
Query: 544 ISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLA 595
++E G + FVM+V+V +G G+NKKVAK AA LE L P A
Sbjct: 308 LTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQA 359
Score = 52.4 bits (124), Expect = 1e-06
Identities = 76/307 (24%), Positives = 115/307 (37%), Gaps = 73/307 (23%)
Query: 348 KNENPVDYTVQIPPSTTYAITPMK--RPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNA 405
KN++ + + PSTT ++ RP++ PS E P +NA
Sbjct: 23 KNQSLLSQPLMSIPSTTSSLPSENAGRPIQNSA---LPSASITSTSAAAESITPTVELNA 79
Query: 406 L-MRLNQ---LKPGLQYKLVSQTG-----------------PVHAPIFTMSVEVDGNSFE 444
L M+L + KP Y + T PV ++ + + V G F
Sbjct: 80 LCMKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFN 139
Query: 445 ASGPSKKTAKLHVAVK---VLQDMGLPTGAEGRDSSKGEDSAEETEAKPAVVAPAPVVEA 501
G +++ AK A K +LQ+ LP E G +S EE
Sbjct: 140 GKGKTRQAAKHDAAAKALRILQNEPLPERLE----VNGRESEEEN--------------- 180
Query: 502 VSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRR-GLKYELISETGGSHDKRFVMEVE 560
L K + V E+ KR + +E+ E+G H K FV +V
Sbjct: 181 -------------------LNKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVS 221
Query: 561 VDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANKKKRAPVPVRGGPKFAAKPH- 619
V +G G +KK++K AA+A LE+L PL K R ++ K KP
Sbjct: 222 VGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPR----IKKKTKPIVKPQT 277
Query: 620 NPGFGMG 626
+P +G G
Sbjct: 278 SPEYGQG 284
Score = 43.9 bits (102), Expect = 5e-04
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 385 KKKKKIQKKEEKAEPPQAMNALMRLNQLKPGL-----QYKLVSQTGPVHAPIFTMSVEVD 439
KK K I K + E Q +N + RL Q++ +Y L+++ G F M V+V
Sbjct: 267 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 326
Query: 440 GNSFEASGPSKKTAKLHVAVKVLQDMG--LPTGAEGRDSSKGED 481
++ E +G +KK AK + A +L+ +G +P + + K E+
Sbjct: 327 NHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEE 370
>gi|82659085 staufen isoform a [Homo sapiens]
Length = 496
Score = 60.5 bits (145), Expect = 5e-09
Identities = 59/232 (25%), Positives = 96/232 (41%), Gaps = 41/232 (17%)
Query: 369 PMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVH 428
P+ +E +G E ++ K+E Q ++ N + +++ ++GP H
Sbjct: 83 PLPERLEVNGRESE--------EENLNKSEISQVFEIALKRNL---PVNFEVARESGPPH 131
Query: 429 APIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEETEA 488
F V V E G SKK +K + A+ VL+++ ++
Sbjct: 132 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEEL------------------KKLPP 173
Query: 489 KPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNE-----KRRGLKYEL 543
PAV P ++ + P + E G G NP+ L + K + +Y L
Sbjct: 174 LPAVERVKPRIKKKTKP--IVKPQTSPEYG-----QGINPISRLAQIQQAKKEKEPEYTL 226
Query: 544 ISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLA 595
++E G + FVM+V+V +G G+NKKVAK AA LE L P A
Sbjct: 227 LTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQA 278
Score = 51.2 bits (121), Expect = 3e-06
Identities = 55/206 (26%), Positives = 82/206 (39%), Gaps = 47/206 (22%)
Query: 426 PVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVK---VLQDMGLPTGAEGRDSSKGEDS 482
PV ++ + + V G F G +++ AK A K +LQ+ LP E G +S
Sbjct: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLE----VNGRES 95
Query: 483 AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRR-GLKY 541
EE L K + V E+ KR + +
Sbjct: 96 EEEN----------------------------------LNKSEISQVFEIALKRNLPVNF 121
Query: 542 ELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANKK 601
E+ E+G H K FV +V V +G G +KK++K AA+A LE+L PL K
Sbjct: 122 EVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVK 181
Query: 602 KRAPVPVRGGPKFAAKPH-NPGFGMG 626
R ++ K KP +P +G G
Sbjct: 182 PR----IKKKTKPIVKPQTSPEYGQG 203
Score = 43.9 bits (102), Expect = 5e-04
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 385 KKKKKIQKKEEKAEPPQAMNALMRLNQLKPGL-----QYKLVSQTGPVHAPIFTMSVEVD 439
KK K I K + E Q +N + RL Q++ +Y L+++ G F M V+V
Sbjct: 186 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 245
Query: 440 GNSFEASGPSKKTAKLHVAVKVLQDMG--LPTGAEGRDSSKGED 481
++ E +G +KK AK + A +L+ +G +P + + K E+
Sbjct: 246 NHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEE 289
>gi|82659083 staufen isoform a [Homo sapiens]
Length = 496
Score = 60.5 bits (145), Expect = 5e-09
Identities = 59/232 (25%), Positives = 96/232 (41%), Gaps = 41/232 (17%)
Query: 369 PMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVH 428
P+ +E +G E ++ K+E Q ++ N + +++ ++GP H
Sbjct: 83 PLPERLEVNGRESE--------EENLNKSEISQVFEIALKRNL---PVNFEVARESGPPH 131
Query: 429 APIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEETEA 488
F V V E G SKK +K + A+ VL+++ ++
Sbjct: 132 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEEL------------------KKLPP 173
Query: 489 KPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNE-----KRRGLKYEL 543
PAV P ++ + P + E G G NP+ L + K + +Y L
Sbjct: 174 LPAVERVKPRIKKKTKP--IVKPQTSPEYG-----QGINPISRLAQIQQAKKEKEPEYTL 226
Query: 544 ISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLA 595
++E G + FVM+V+V +G G+NKKVAK AA LE L P A
Sbjct: 227 LTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQA 278
Score = 51.2 bits (121), Expect = 3e-06
Identities = 55/206 (26%), Positives = 82/206 (39%), Gaps = 47/206 (22%)
Query: 426 PVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVK---VLQDMGLPTGAEGRDSSKGEDS 482
PV ++ + + V G F G +++ AK A K +LQ+ LP E G +S
Sbjct: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLE----VNGRES 95
Query: 483 AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRR-GLKY 541
EE L K + V E+ KR + +
Sbjct: 96 EEEN----------------------------------LNKSEISQVFEIALKRNLPVNF 121
Query: 542 ELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANKK 601
E+ E+G H K FV +V V +G G +KK++K AA+A LE+L PL K
Sbjct: 122 EVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVK 181
Query: 602 KRAPVPVRGGPKFAAKPH-NPGFGMG 626
R ++ K KP +P +G G
Sbjct: 182 PR----IKKKTKPIVKPQTSPEYGQG 203
Score = 43.9 bits (102), Expect = 5e-04
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 385 KKKKKIQKKEEKAEPPQAMNALMRLNQLKPGL-----QYKLVSQTGPVHAPIFTMSVEVD 439
KK K I K + E Q +N + RL Q++ +Y L+++ G F M V+V
Sbjct: 186 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 245
Query: 440 GNSFEASGPSKKTAKLHVAVKVLQDMG--LPTGAEGRDSSKGED 481
++ E +G +KK AK + A +L+ +G +P + + K E+
Sbjct: 246 NHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEE 289
>gi|19743838 TAR RNA binding protein 2 isoform b [Homo sapiens]
Length = 345
Score = 58.5 bits (140), Expect = 2e-08
Identities = 60/198 (30%), Positives = 82/198 (41%), Gaps = 23/198 (11%)
Query: 418 YKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAK---LHVAVKVLQDMGL------- 467
Y L+ G H P FT V V S GPSKK AK VA+K L+ +
Sbjct: 27 YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALED 86
Query: 468 PTGAEGRDSSKGEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKN 527
+ DSS ED T A A P P V +P + +Q N
Sbjct: 87 SSSFSPLDSSLPEDIPVFTAA--AAATPVPSVVLTRSPPMELQPPVSPQQSEC------N 138
Query: 528 PVMELNE--KRRGLK---YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAAL 582
PV L E ++G + Y + E+G +H K F M V+ G+G++KK+AK AA
Sbjct: 139 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAA 198
Query: 583 AALEKLFPDTPLALDANK 600
L ++ A D N+
Sbjct: 199 KMLLRVHTVPLDARDGNE 216
Score = 35.8 bits (81), Expect = 0.14
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVL 462
+Y + ++GP H FTM+ V+ SG SKK AK + A K+L
Sbjct: 156 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 201
>gi|19743840 TAR RNA binding protein 2 isoform a [Homo sapiens]
Length = 366
Score = 58.5 bits (140), Expect = 2e-08
Identities = 60/198 (30%), Positives = 82/198 (41%), Gaps = 23/198 (11%)
Query: 418 YKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAK---LHVAVKVLQDMGL------- 467
Y L+ G H P FT V V S GPSKK AK VA+K L+ +
Sbjct: 48 YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALED 107
Query: 468 PTGAEGRDSSKGEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKN 527
+ DSS ED T A A P P V +P + +Q N
Sbjct: 108 SSSFSPLDSSLPEDIPVFTAA--AAATPVPSVVLTRSPPMELQPPVSPQQSEC------N 159
Query: 528 PVMELNE--KRRGLK---YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAAL 582
PV L E ++G + Y + E+G +H K F M V+ G+G++KK+AK AA
Sbjct: 160 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAA 219
Query: 583 AALEKLFPDTPLALDANK 600
L ++ A D N+
Sbjct: 220 KMLLRVHTVPLDARDGNE 237
Score = 35.8 bits (81), Expect = 0.14
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVL 462
+Y + ++GP H FTM+ V+ SG SKK AK + A K+L
Sbjct: 177 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 222
>gi|85068512 TAR RNA binding protein 2 isoform b [Homo sapiens]
Length = 345
Score = 58.5 bits (140), Expect = 2e-08
Identities = 60/198 (30%), Positives = 82/198 (41%), Gaps = 23/198 (11%)
Query: 418 YKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAK---LHVAVKVLQDMGL------- 467
Y L+ G H P FT V V S GPSKK AK VA+K L+ +
Sbjct: 27 YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALED 86
Query: 468 PTGAEGRDSSKGEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKN 527
+ DSS ED T A A P P V +P + +Q N
Sbjct: 87 SSSFSPLDSSLPEDIPVFTAA--AAATPVPSVVLTRSPPMELQPPVSPQQSEC------N 138
Query: 528 PVMELNE--KRRGLK---YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAAL 582
PV L E ++G + Y + E+G +H K F M V+ G+G++KK+AK AA
Sbjct: 139 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAA 198
Query: 583 AALEKLFPDTPLALDANK 600
L ++ A D N+
Sbjct: 199 KMLLRVHTVPLDARDGNE 216
Score = 35.8 bits (81), Expect = 0.14
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVL 462
+Y + ++GP H FTM+ V+ SG SKK AK + A K+L
Sbjct: 156 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 201
>gi|82659091 staufen isoform c [Homo sapiens]
Length = 502
Score = 57.4 bits (137), Expect = 4e-08
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 419 KLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSK 478
++ ++GP H F V V E G SKK +K + A+ VL+++
Sbjct: 128 QVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEEL------------- 174
Query: 479 GEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNE---- 534
++ PAV P ++ + P + E G G NP+ L +
Sbjct: 175 -----KKLPPLPAVERVKPRIKKKTKP--IVKPQTSPEYG-----QGINPISRLAQIQQA 222
Query: 535 -KRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTP 593
K + +Y L++E G + FVM+V+V +G G+NKKVAK AA LE L P
Sbjct: 223 KKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVP 282
Query: 594 LA 595
A
Sbjct: 283 QA 284
Score = 46.6 bits (109), Expect = 8e-05
Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 39/205 (19%)
Query: 426 PVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVK---VLQDMGLPTGAEGRDSSKGEDS 482
PV ++ + + V G F G +++ AK A K +LQ+ LP E G +S
Sbjct: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLE----VNGRES 95
Query: 483 AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLKYE 542
EE K + + + P +N + LK +
Sbjct: 96 EEENLNKSEISQVFEIALKRNLP--------------------------VNFESFPLK-Q 128
Query: 543 LISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANKKK 602
+ E+G H K FV +V V +G G +KK++K AA+A LE+L PL K
Sbjct: 129 VARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKP 188
Query: 603 RAPVPVRGGPKFAAKPH-NPGFGMG 626
R ++ K KP +P +G G
Sbjct: 189 R----IKKKTKPIVKPQTSPEYGQG 209
Score = 43.9 bits (102), Expect = 5e-04
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 385 KKKKKIQKKEEKAEPPQAMNALMRLNQLKPGL-----QYKLVSQTGPVHAPIFTMSVEVD 439
KK K I K + E Q +N + RL Q++ +Y L+++ G F M V+V
Sbjct: 192 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 251
Query: 440 GNSFEASGPSKKTAKLHVAVKVLQDMG--LPTGAEGRDSSKGED 481
++ E +G +KK AK + A +L+ +G +P + + K E+
Sbjct: 252 NHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEE 295
>gi|208431829 eukaryotic translation initiation factor 2-alpha
kinase 2 isoform b [Homo sapiens]
Length = 510
Score = 47.0 bits (110), Expect = 6e-05
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 15/83 (18%)
Query: 531 ELNEKRRG----LKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAAL 585
ELN R+ LKY+ + +G HD+RF +V +DG++F +G G +KK AK AA A+
Sbjct: 13 ELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAV 72
Query: 586 EKLFPDTPLALDANKKKRAPVPV 608
E L NK+K+A P+
Sbjct: 73 EIL----------NKEKKAVSPL 85
Score = 33.9 bits (76), Expect = 0.52
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 416 LQYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAK---LHVAVKVL 462
L+Y+ + +GP H FT V +DG F E G SKK AK +AV++L
Sbjct: 25 LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEIL 75
>gi|208431827 eukaryotic translation initiation factor 2-alpha
kinase 2 isoform a [Homo sapiens]
Length = 551
Score = 47.0 bits (110), Expect = 6e-05
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 15/83 (18%)
Query: 531 ELNEKRRG----LKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAAL 585
ELN R+ LKY+ + +G HD+RF +V +DG++F +G G +KK AK AA A+
Sbjct: 13 ELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAV 72
Query: 586 EKLFPDTPLALDANKKKRAPVPV 608
E L NK+K+A P+
Sbjct: 73 EIL----------NKEKKAVSPL 85
Score = 33.9 bits (76), Expect = 0.52
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 416 LQYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAK---LHVAVKVL 462
L+Y+ + +GP H FT V +DG F E G SKK AK +AV++L
Sbjct: 25 LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEIL 75
>gi|4506103 eukaryotic translation initiation factor 2-alpha kinase
2 isoform a [Homo sapiens]
Length = 551
Score = 47.0 bits (110), Expect = 6e-05
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 15/83 (18%)
Query: 531 ELNEKRRG----LKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAAL 585
ELN R+ LKY+ + +G HD+RF +V +DG++F +G G +KK AK AA A+
Sbjct: 13 ELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAV 72
Query: 586 EKLFPDTPLALDANKKKRAPVPV 608
E L NK+K+A P+
Sbjct: 73 EIL----------NKEKKAVSPL 85
Score = 33.9 bits (76), Expect = 0.52
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 416 LQYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAK---LHVAVKVL 462
L+Y+ + +GP H FT V +DG F E G SKK AK +AV++L
Sbjct: 25 LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEIL 75
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,571,783
Number of Sequences: 37866
Number of extensions: 1581671
Number of successful extensions: 10816
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 242
Number of HSP's that attempted gapping in prelim test: 8208
Number of HSP's gapped (non-prelim): 1841
length of query: 690
length of database: 18,247,518
effective HSP length: 109
effective length of query: 581
effective length of database: 14,120,124
effective search space: 8203792044
effective search space used: 8203792044
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.