Guide to the Human Genome
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Search of human proteins with 239758160

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239758160 PREDICTED: hypothetical protein [Homo sapiens]
         (44 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239758160 PREDICTED: hypothetical protein [Homo sapiens]            91   2e-19
gi|239743173 PREDICTED: similar to solute carrier family 29 (nuc...    91   2e-19
gi|239508837 PREDICTED: similar to solute carrier family 29 (nuc...    91   2e-19
gi|239749147 PREDICTED: hypothetical protein XP_002346925 [Homo ...    90   3e-19
gi|100913034 solute carrier family 29 (nucleoside transporters),...    88   1e-18
gi|100913032 solute carrier family 29 (nucleoside transporters),...    88   1e-18
gi|239743192 PREDICTED: similar to solute carrier family 29 (nuc...    87   4e-18
gi|239508861 PREDICTED: similar to solute carrier family 29 (nuc...    87   4e-18
gi|90669191 solute carrier family 22 member 7 isoform b [Homo sa...    27   4.6  
gi|24497497 solute carrier family 22 member 7 isoform a [Homo sa...    27   4.6  
gi|238776801 SVH protein isoform f [Homo sapiens]                      26   6.0  
gi|238776799 SVH protein isoform d [Homo sapiens]                      26   6.0  
gi|238776797 SVH protein isoform e [Homo sapiens]                      26   6.0  
gi|238776795 SVH protein isoform c [Homo sapiens]                      26   6.0  
gi|238776793 SVH protein isoform b [Homo sapiens]                      26   6.0  
gi|31377663 SVH protein isoform a [Homo sapiens]                       26   6.0  
gi|169165524 PREDICTED: similar to SVH protein isoform 2 [Homo s...    26   6.0  
gi|169165522 PREDICTED: similar to SVH protein isoform 1 [Homo s...    26   6.0  
gi|113415138 PREDICTED: similar to SVH protein isoform 2 [Homo s...    26   6.0  
gi|169165931 PREDICTED: similar to SVH protein isoform 1 [Homo s...    26   6.0  
gi|169165133 PREDICTED: similar to SVH protein isoform 1 [Homo s...    26   6.0  
gi|113414573 PREDICTED: similar to SVH protein isoform 2 [Homo s...    26   6.0  
gi|29540566 armadillo repeat containing, X-linked 3 [Homo sapiens]     26   7.8  
gi|29540564 armadillo repeat containing, X-linked 3 [Homo sapiens]     26   7.8  
gi|7705274 armadillo repeat containing, X-linked 3 [Homo sapiens]      26   7.8  
gi|108796649 hypothetical protein LOC283677 [Homo sapiens]             26   7.8  

>gi|239758160 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 44

 Score = 91.3 bits (225), Expect = 2e-19
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1  MTVSYVSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
          MTVSYVSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL
Sbjct: 1  MTVSYVSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44


>gi|239743173 PREDICTED: similar to solute carrier family 29
           (nucleoside transporters), member 4 [Homo sapiens]
          Length = 414

 Score = 91.3 bits (225), Expect = 2e-19
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1   MTVSYVSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
           MTVSYVSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL
Sbjct: 371 MTVSYVSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 414


>gi|239508837 PREDICTED: similar to solute carrier family 29
           (nucleoside transporters), member 4 [Homo sapiens]
          Length = 414

 Score = 91.3 bits (225), Expect = 2e-19
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1   MTVSYVSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
           MTVSYVSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL
Sbjct: 371 MTVSYVSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 414


>gi|239749147 PREDICTED: hypothetical protein XP_002346925 [Homo
          sapiens]
          Length = 44

 Score = 90.1 bits (222), Expect = 3e-19
 Identities = 43/44 (97%), Positives = 44/44 (100%)

Query: 1  MTVSYVSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
          MTVSY+SGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL
Sbjct: 1  MTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44


>gi|100913034 solute carrier family 29 (nucleoside transporters),
           member 4 [Homo sapiens]
          Length = 530

 Score = 88.2 bits (217), Expect = 1e-18
 Identities = 42/44 (95%), Positives = 43/44 (97%)

Query: 1   MTVSYVSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
           MTVSY+SGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSIL GL
Sbjct: 487 MTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILAGL 530


>gi|100913032 solute carrier family 29 (nucleoside transporters),
           member 4 [Homo sapiens]
          Length = 530

 Score = 88.2 bits (217), Expect = 1e-18
 Identities = 42/44 (95%), Positives = 43/44 (97%)

Query: 1   MTVSYVSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
           MTVSY+SGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSIL GL
Sbjct: 487 MTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILAGL 530


>gi|239743192 PREDICTED: similar to solute carrier family 29
           (nucleoside transporters), member 4 [Homo sapiens]
          Length = 329

 Score = 86.7 bits (213), Expect = 4e-18
 Identities = 41/44 (93%), Positives = 44/44 (100%)

Query: 1   MTVSYVSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
           MTVSY+SGLTLGSAVAYC+YSLTR+AHGSCLHASTANGSILTGL
Sbjct: 286 MTVSYMSGLTLGSAVAYCSYSLTRNAHGSCLHASTANGSILTGL 329


>gi|239508861 PREDICTED: similar to solute carrier family 29
           (nucleoside transporters), member 4 [Homo sapiens]
          Length = 329

 Score = 86.7 bits (213), Expect = 4e-18
 Identities = 41/44 (93%), Positives = 44/44 (100%)

Query: 1   MTVSYVSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
           MTVSY+SGLTLGSAVAYC+YSLTR+AHGSCLHASTANGSILTGL
Sbjct: 286 MTVSYMSGLTLGSAVAYCSYSLTRNAHGSCLHASTANGSILTGL 329


>gi|90669191 solute carrier family 22 member 7 isoform b [Homo
           sapiens]
          Length = 548

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 1   MTVSYVSGLTLGSA----VAYCTYSLTRDAHGSCLHAST 35
           + V+YVS L LG A    V+Y  +++TR   GS L   T
Sbjct: 175 LLVAYVSTLVLGLASAASVSYVMFAITRTLTGSALAGFT 213


>gi|24497497 solute carrier family 22 member 7 isoform a [Homo
           sapiens]
          Length = 546

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 1   MTVSYVSGLTLGSA----VAYCTYSLTRDAHGSCLHAST 35
           + V+YVS L LG A    V+Y  +++TR   GS L   T
Sbjct: 173 LLVAYVSTLVLGLASAASVSYVMFAITRTLTGSALAGFT 211


>gi|238776801 SVH protein isoform f [Homo sapiens]
          Length = 225

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 7  SGLTLGSAVAYCTYSLTR 24
          +GL LG+   YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29


>gi|238776799 SVH protein isoform d [Homo sapiens]
          Length = 249

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 7  SGLTLGSAVAYCTYSLTR 24
          +GL LG+   YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29


>gi|238776797 SVH protein isoform e [Homo sapiens]
          Length = 284

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 7  SGLTLGSAVAYCTYSLTR 24
          +GL LG+   YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29


>gi|238776795 SVH protein isoform c [Homo sapiens]
          Length = 284

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 7  SGLTLGSAVAYCTYSLTR 24
          +GL LG+   YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29


>gi|238776793 SVH protein isoform b [Homo sapiens]
          Length = 308

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 7  SGLTLGSAVAYCTYSLTR 24
          +GL LG+   YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29


>gi|31377663 SVH protein isoform a [Homo sapiens]
          Length = 343

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 7  SGLTLGSAVAYCTYSLTR 24
          +GL LG+   YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29


>gi|169165524 PREDICTED: similar to SVH protein isoform 2 [Homo
          sapiens]
          Length = 253

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 7  SGLTLGSAVAYCTYSLTR 24
          +GL LG+   YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29


>gi|169165522 PREDICTED: similar to SVH protein isoform 1 [Homo
          sapiens]
          Length = 284

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 7  SGLTLGSAVAYCTYSLTR 24
          +GL LG+   YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29


>gi|113415138 PREDICTED: similar to SVH protein isoform 2 [Homo
          sapiens]
          Length = 253

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 7  SGLTLGSAVAYCTYSLTR 24
          +GL LG+   YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29


>gi|169165931 PREDICTED: similar to SVH protein isoform 1 [Homo
          sapiens]
          Length = 284

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 7  SGLTLGSAVAYCTYSLTR 24
          +GL LG+   YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29


>gi|169165133 PREDICTED: similar to SVH protein isoform 1 [Homo
          sapiens]
          Length = 253

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 7  SGLTLGSAVAYCTYSLTR 24
          +GL LG+   YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29


>gi|113414573 PREDICTED: similar to SVH protein isoform 2 [Homo
          sapiens]
          Length = 284

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 7  SGLTLGSAVAYCTYSLTR 24
          +GL LG+   YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29


>gi|29540566 armadillo repeat containing, X-linked 3 [Homo
          sapiens]
          Length = 379

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 7  SGLTLGSAVAYCTYSLTR 24
          +GL +G+   YC Y LTR
Sbjct: 12 AGLVIGAGACYCIYRLTR 29


>gi|29540564 armadillo repeat containing, X-linked 3 [Homo
          sapiens]
          Length = 379

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 7  SGLTLGSAVAYCTYSLTR 24
          +GL +G+   YC Y LTR
Sbjct: 12 AGLVIGAGACYCIYRLTR 29


>gi|7705274 armadillo repeat containing, X-linked 3 [Homo sapiens]
          Length = 379

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 7  SGLTLGSAVAYCTYSLTR 24
          +GL +G+   YC Y LTR
Sbjct: 12 AGLVIGAGACYCIYRLTR 29


>gi|108796649 hypothetical protein LOC283677 [Homo sapiens]
          Length = 266

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 7/36 (19%)

Query: 8  GLTLGSAV-------AYCTYSLTRDAHGSCLHASTA 36
          GLT G A        A C  S TRD  G CL A TA
Sbjct: 12 GLTGGEAAEWPLQRYARCIPSNTRDPPGPCLEAGTA 47


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.127    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,376,400
Number of Sequences: 37866
Number of extensions: 28378
Number of successful extensions: 93
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 26
length of query: 44
length of database: 18,247,518
effective HSP length: 18
effective length of query: 26
effective length of database: 17,565,930
effective search space: 456714180
effective search space used: 456714180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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