Search of human proteins with 239758045

Search of human proteins with 239758045

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239758045 PREDICTED: similar to hCG1993567 [Homo sapiens]
         (112 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239758045 PREDICTED: similar to hCG1993567 [Homo sapiens]          219   4e-58
gi|169180189 PREDICTED: similar to hCG1993567 [Homo sapiens]          150   2e-37
gi|169174730 PREDICTED: similar to hCG1993567 [Homo sapiens]          150   2e-37
gi|169177162 PREDICTED: similar to hCG1993567 [Homo sapiens]          150   2e-37
gi|4506661 ribosomal protein L7a [Homo sapiens]                        54   3e-08
gi|194018484 NLR family, pyrin domain containing 11 [Homo sapiens]     28   1.6  
gi|164698517 MAM domain containing 1 isoform 1 [Homo sapiens]          27   2.7  
gi|38158013 MAM domain containing 1 isoform 2 [Homo sapiens]           27   2.7  
gi|16904383 leucine rich repeat containing 7 [Homo sapiens]            27   2.7  
gi|40549435 transmembrane phosphatase with tensin homology isofo...    27   3.5  
gi|40549433 transmembrane phosphatase with tensin homology isofo...    27   3.5  
gi|109689707 transmembrane phosphatase with tensin homology isof...    27   3.5  
gi|153266866 gamma-aminobutyric acid (GABA) receptor, rho 2 prec...    27   4.6  
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    26   6.0  
gi|123173772 tRNA(m1A58)-methyltransferase subunit TRM61 [Homo s...    26   6.0  
gi|4506607 ribosomal protein L18 [Homo sapiens]                        26   6.0  
gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]                         26   7.8  

>gi|239758045 PREDICTED: similar to hCG1993567 [Homo sapiens]
          Length = 112

 Score =  219 bits (558), Expect = 4e-58
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MESTLKQKYITNIQFYLWLQLIFLSRSNYLLLQLPKVQKGKKAKGKKVVPTLAVLKKQET 60
           MESTLKQKYITNIQFYLWLQLIFLSRSNYLLLQLPKVQKGKKAKGKKVVPTLAVLKKQET
Sbjct: 1   MESTLKQKYITNIQFYLWLQLIFLSRSNYLLLQLPKVQKGKKAKGKKVVPTLAVLKKQET 60

Query: 61  MKVVNLPFEKFGTGQDILALDRTSSPKGTSLALSNGPIILGCSSREPSSISS 112
           MKVVNLPFEKFGTGQDILALDRTSSPKGTSLALSNGPIILGCSSREPSSISS
Sbjct: 61  MKVVNLPFEKFGTGQDILALDRTSSPKGTSLALSNGPIILGCSSREPSSISS 112


>gi|169180189 PREDICTED: similar to hCG1993567 [Homo sapiens]
          Length = 89

 Score =  150 bits (380), Expect = 2e-37
 Identities = 78/82 (95%), Positives = 80/82 (97%)

Query: 31  LLQLPKVQKGKKAKGKKVVPTLAVLKKQETMKVVNLPFEKFGTGQDILALDRTSSPKGTS 90
           +LQLPKV+K KKAKGKKVV TLAVLKKQETMKVVNLPFEKFGTGQDILALDRTSSPKGTS
Sbjct: 8   ILQLPKVRKRKKAKGKKVVLTLAVLKKQETMKVVNLPFEKFGTGQDILALDRTSSPKGTS 67

Query: 91  LALSNGPIILGCSSREPSSISS 112
           LALSNGPIILGCSSREPSSISS
Sbjct: 68  LALSNGPIILGCSSREPSSISS 89


>gi|169174730 PREDICTED: similar to hCG1993567 [Homo sapiens]
          Length = 89

 Score =  150 bits (380), Expect = 2e-37
 Identities = 78/82 (95%), Positives = 80/82 (97%)

Query: 31  LLQLPKVQKGKKAKGKKVVPTLAVLKKQETMKVVNLPFEKFGTGQDILALDRTSSPKGTS 90
           +LQLPKV+K KKAKGKKVV TLAVLKKQETMKVVNLPFEKFGTGQDILALDRTSSPKGTS
Sbjct: 8   ILQLPKVRKRKKAKGKKVVLTLAVLKKQETMKVVNLPFEKFGTGQDILALDRTSSPKGTS 67

Query: 91  LALSNGPIILGCSSREPSSISS 112
           LALSNGPIILGCSSREPSSISS
Sbjct: 68  LALSNGPIILGCSSREPSSISS 89


>gi|169177162 PREDICTED: similar to hCG1993567 [Homo sapiens]
          Length = 89

 Score =  150 bits (380), Expect = 2e-37
 Identities = 78/82 (95%), Positives = 80/82 (97%)

Query: 31  LLQLPKVQKGKKAKGKKVVPTLAVLKKQETMKVVNLPFEKFGTGQDILALDRTSSPKGTS 90
           +LQLPKV+K KKAKGKKVV TLAVLKKQETMKVVNLPFEKFGTGQDILALDRTSSPKGTS
Sbjct: 8   ILQLPKVRKRKKAKGKKVVLTLAVLKKQETMKVVNLPFEKFGTGQDILALDRTSSPKGTS 67

Query: 91  LALSNGPIILGCSSREPSSISS 112
           LALSNGPIILGCSSREPSSISS
Sbjct: 68  LALSNGPIILGCSSREPSSISS 89


>gi|4506661 ribosomal protein L7a [Homo sapiens]
          Length = 266

 Score = 53.9 bits (128), Expect = 3e-08
 Identities = 30/43 (69%), Positives = 31/43 (72%), Gaps = 4/43 (9%)

Query: 39 KGKKAKGKKVVPTLAVLKKQETMKVVNLPFEK----FGTGQDI 77
          KGKKAKGKKV P  AV+KKQE  KVVN  FEK    FG GQDI
Sbjct: 3  KGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDI 45


>gi|194018484 NLR family, pyrin domain containing 11 [Homo sapiens]
          Length = 1033

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 15  FYLWLQLIFLSRSNYLLLQLPKVQKGKKAKGKKVVPTLAVLK 56
           FY+ LQL + S S Y    L     G++A GK +V  LAVL+
Sbjct: 129 FYI-LQLAYDSTSYYSANNLNVFLMGERASGKTIVINLAVLR 169


>gi|164698517 MAM domain containing 1 isoform 1 [Homo sapiens]
          Length = 956

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 40  GKKAKGKKVVPTLAVLKKQETMKVVNLPFEKFGTGQDILALDRTSSP 86
           G   KG+ +   L  L K E  +V   P  KFG G   + + + S+P
Sbjct: 692 GNIQKGELITYNLTELIKPEAYEVRLTPLTKFGEGDSTIRVIKYSAP 738


>gi|38158013 MAM domain containing 1 isoform 2 [Homo sapiens]
          Length = 727

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 40  GKKAKGKKVVPTLAVLKKQETMKVVNLPFEKFGTGQDILALDRTSSP 86
           G   KG+ +   L  L K E  +V   P  KFG G   + + + S+P
Sbjct: 463 GNIQKGELITYNLTELIKPEAYEVRLTPLTKFGEGDSTIRVIKYSAP 509


>gi|16904383 leucine rich repeat containing 7 [Homo sapiens]
          Length = 1537

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 21  LIFLSRSNYLLLQLPKVQKGKKAKGKKVVPTLAVLKKQETMKVVNLPFEKFGTGQDIL 78
           +I +S+S   L  L K  K  K K  + +  + +     T KV N+P E + +G D L
Sbjct: 922 VISISKSTERLSPLMKDIKSNKFKKSQSIDEIDI----GTYKVYNIPLENYASGSDHL 975


>gi|40549435 transmembrane phosphatase with tensin homology isoform
           gamma [Homo sapiens]
          Length = 513

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 9   YITNIQFYLWLQLIFLSRSNYLLLQLPKVQKGKKAKGKKVVPT 51
           Y  N  FY WL   F+  +N L L   ++    K K +++ P+
Sbjct: 450 YYDNCSFYFWLHTSFI-ENNRLYLPKNELDNLHKQKARRIYPS 491


>gi|40549433 transmembrane phosphatase with tensin homology isoform
           beta [Homo sapiens]
          Length = 533

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 9   YITNIQFYLWLQLIFLSRSNYLLLQLPKVQKGKKAKGKKVVPT 51
           Y  N  FY WL   F+  +N L L   ++    K K +++ P+
Sbjct: 470 YYDNCSFYFWLHTSFI-ENNRLYLPKNELDNLHKQKARRIYPS 511


>gi|109689707 transmembrane phosphatase with tensin homology isoform
           alpha [Homo sapiens]
          Length = 551

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 9   YITNIQFYLWLQLIFLSRSNYLLLQLPKVQKGKKAKGKKVVPT 51
           Y  N  FY WL   F+  +N L L   ++    K K +++ P+
Sbjct: 488 YYDNCSFYFWLHTSFI-ENNRLYLPKNELDNLHKQKARRIYPS 529


>gi|153266866 gamma-aminobutyric acid (GABA) receptor, rho 2
           precursor [Homo sapiens]
          Length = 490

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 9   YITNIQFYLWLQ--LIFLSRSNYLLLQ-LPKVQKGKKAKGKKVVPTLAVLKKQETM 61
           Y+  +  YLW+    +FLS   Y  +  L  VQ+ K+ K ++  P +  +   +TM
Sbjct: 345 YVKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERKERKLREKFPCMCGMLHSKTM 400


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
           sapiens]
          Length = 1818

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 33  QLPKVQKGKKAKGKKVVPTLAVLKKQETMKVVNLPFEKFGT 73
           Q P++ + KK+  KK + T+A   K+++ K      EKF +
Sbjct: 254 QEPQIDEKKKSNFKKKMRTVATKSKEKSKKFTPPKSEKFSS 294


>gi|123173772 tRNA(m1A58)-methyltransferase subunit TRM61 [Homo
           sapiens]
          Length = 289

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 33  QLPKVQKGKKAKGKKVVPTLAVLKKQETMKVVNLPFEKFGTGQD 76
           Q+ +  +   A+G   + TL VL +   ++ V+LP    GTG D
Sbjct: 212 QVQRTCQALAARGFSELSTLEVLPQVYNVRTVSLPPPDLGTGTD 255


>gi|4506607 ribosomal protein L18 [Homo sapiens]
          Length = 188

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 16/95 (16%)

Query: 19  LQLIFLSRSNYLLLQLPKVQKGKKAKGKKVVPTLAVLKKQETMKVVNLPFEK-------- 70
           L+ +F+SR+N   L L ++ +  K  G++    + V    + ++V  +P  K        
Sbjct: 48  LKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTS 107

Query: 71  ------FGTGQDILALDRTS--SPKGTSLALSNGP 97
                    G  IL  D+ +  SPKG    L +GP
Sbjct: 108 RARSRILRAGGKILTFDQLALDSPKGCGTVLLSGP 142


>gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]
          Length = 3957

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 34   LPKVQKGKKAKGKKVVPTLAVLKKQETMKVVNLPFEKFGTGQD 76
            LP    GK  K   V PT    + +ETM V  L  + F +GQD
Sbjct: 1961 LPVSPSGKTEKQPPVSPTSKTERIEETMSVREL-MKAFQSGQD 2002


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,885,233
Number of Sequences: 37866
Number of extensions: 145525
Number of successful extensions: 326
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 316
Number of HSP's gapped (non-prelim): 17
length of query: 112
length of database: 18,247,518
effective HSP length: 82
effective length of query: 30
effective length of database: 15,142,506
effective search space: 454275180
effective search space used: 454275180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.