Guide to the Human Genome
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Name: LOC100132161 Sequence: fasta or formatted (89aa) NCBI GI: 169174730
Description:

PREDICTED: similar to hCG1993567

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5          4           1
 C cysteine            1.1          1           1
 D aspartate           2.2          2           1
 E glutamate           3.4          3           1
 F phenylalanine       2.2          2           1
 G glycine             7.9          7           1
 H histidine           0.0          0           0
 I isoleucine          6.7          6           2
 K lysine             13.5         12           2
 L leucine            12.4         11           1
 M methionine          3.4          3           1
 N asparagine          2.2          2           1
 P proline             5.6          5           1
 Q glutamine           3.4          3           1
 R arginine            4.5          4           1
 S serine             11.2         10           2
 T threonine           7.9          7           1
 V valine              7.9          7           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1993567 
LOC643630             1.000   PREDICTED: similar to hCG1993567 
LOC100132167          1.000   PREDICTED: similar to hCG1993567 
LOC100292301          0.856   PREDICTED: similar to hCG1993567 
RPL7A                 0.151   ribosomal protein L7a 
MDGA2                 0.014   MAM domain containing 1 isoform 1 
MDGA2                 0.014   MAM domain containing 1 isoform 2 
COL11A1               0.014   alpha 1 type XI collagen isoform B preproprotein [Ho...
TNRC4                 0.007   trinucleotide repeat containing 4 
TRMT61A               0.007   tRNA(m1A58)-methyltransferase subunit TRM61 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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