Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TRMT61A Sequence: fasta or formatted (289aa) NCBI GI: 123173772
Description:

tRNA(m1A58)-methyltransferase subunit TRM61

Referenced in:

tRNA Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         21           2
 C cysteine            2.1          6           1
 D aspartate           3.5         10           1
 E glutamate           5.9         17           2
 F phenylalanine       3.8         11           1
 G glycine            10.4         30           2
 H histidine           4.5         13           1
 I isoleucine          3.8         11           2
 K lysine              2.1          6           1
 L leucine             8.0         23           1
 M methionine          1.7          5           2
 N asparagine          0.7          2           1
 P proline             5.9         17           3
 Q glutamine           4.2         12           2
 R arginine            6.9         20           1
 S serine              7.3         21           1
 T threonine           9.0         26           1
 V valine              9.7         28           2
 W tryptophan          1.7          5           1
 Y tyrosine            1.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tRNA(m1A58)-methyltransferase subunit TRM61 
TRMT61B               0.039   tRNA methyltransferase 61 homolog B 
LOC100134365          0.019   PREDICTED: similar to ankyrin repeat domain 36 [Hom...
PCMTD1                0.014   protein-L-isoaspartate (D-aspartate) O-methyltransf...
PCMTD2                0.012   protein-L-isoaspartate (D-aspartate) O-methyltransf...
PCMTD2                0.012   protein-L-isoaspartate (D-aspartate) O-methyltransf...
C15orf55              0.011   nuclear protein in testis 
LMTK2                 0.009   lemur tyrosine kinase 2 
MUC4                  0.007   mucin 4 isoform a 
AARS                  0.007   alanyl-tRNA synthetase 
COL1A1                0.007   alpha 1 type I collagen preproprotein 
CDON                  0.007   surface glycoprotein, Ig superfamily member 
FAM83A                0.005   hypothetical protein LOC84985 isoform b 
FAM83A                0.005   hypothetical protein LOC84985 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press