Search of human proteins with 239758025

Search of human proteins with 239758025

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239758025 PREDICTED: hypothetical protein [Homo sapiens]
         (121 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239758025 PREDICTED: hypothetical protein [Homo sapiens]           255   6e-69
gi|239758003 PREDICTED: hypothetical protein XP_002346264 [Homo ...   228   1e-60
gi|239758005 PREDICTED: hypothetical protein XP_002346265 [Homo ...   215   6e-57
gi|239758079 PREDICTED: hypothetical protein [Homo sapiens]           210   2e-55
gi|239758019 PREDICTED: hypothetical protein [Homo sapiens]           150   2e-37
gi|239755284 PREDICTED: hypothetical protein [Homo sapiens]            97   3e-21
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]            59   1e-09
gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens]           54   4e-08
gi|109689695 transient receptor potential cation channel, subfam...    34   0.030
gi|54633319 PDZ domain-containing guanine nucleotide exchange fa...    30   0.57 
gi|11141889 WW45 protein [Homo sapiens]                                28   2.2  
gi|58219008 RAD26L hypothetical protein [Homo sapiens]                 28   2.2  
gi|190358501 hypothetical protein LOC55435 isoform b [Homo sapiens]    27   2.8  
gi|190358499 hypothetical protein LOC55435 isoform a [Homo sapiens]    27   2.8  
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]    27   2.8  
gi|194294523 intersectin 2 isoform 3 [Homo sapiens]                    27   2.8  
gi|194294521 intersectin 2 isoform 1 [Homo sapiens]                    27   2.8  
gi|194294525 intersectin 2 isoform 2 [Homo sapiens]                    27   2.8  
gi|23618926 zinc finger protein 559 [Homo sapiens]                     27   2.8  
gi|116008447 CAP-GLY domain containing linker protein 2 isoform ...    27   4.8  
gi|14702162 CAP-GLY domain containing linker protein 2 isoform 2...    27   4.8  
gi|119120894 Dmx-like 2 [Homo sapiens]                                 26   6.3  
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]    26   6.3  

>gi|239758025 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 121

 Score =  255 bits (651), Expect = 6e-69
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MESSSNELNAIIEWSRMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRNYRMESKRI 60
           MESSSNELNAIIEWSRMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRNYRMESKRI
Sbjct: 1   MESSSNELNAIIEWSRMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRNYRMESKRI 60

Query: 61  IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIIIERNRMESSLDGNEWIIIEW 120
           IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIIIERNRMESSLDGNEWIIIEW
Sbjct: 61  IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIIIERNRMESSLDGNEWIIIEW 120

Query: 121 K 121
           K
Sbjct: 121 K 121


>gi|239758003 PREDICTED: hypothetical protein XP_002346264 [Homo
           sapiens]
          Length = 135

 Score =  228 bits (580), Expect = 1e-60
 Identities = 112/129 (86%), Positives = 116/129 (89%), Gaps = 9/129 (6%)

Query: 1   MESSSNELNAIIEWSRMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRNYRMESKRI 60
           MESSSNELNAIIEWSRMESS+NGKEWNHRIESNGINI+WTRMESTSNGIKRNYRMESKR 
Sbjct: 1   MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRNYRMESKRS 60

Query: 61  IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIIIERNRMESSLDGNE------ 114
           IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGII ERNRMESS +GNE      
Sbjct: 61  IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNERSHHLM 120

Query: 115 ---WIIIEW 120
               III+W
Sbjct: 121 ELHGIIIKW 129



 Score = 36.6 bits (83), Expect = 0.005
 Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 1/36 (2%)

Query: 11  IIEWSRMESSANGKEWNHRI-ESNGINIEWTRMEST 45
           I E +RMESS+NG E +H + E +GI I+W RM S+
Sbjct: 100 ITERNRMESSSNGNERSHHLMELHGIIIKWNRMVSS 135


>gi|239758005 PREDICTED: hypothetical protein XP_002346265 [Homo
           sapiens]
          Length = 127

 Score =  215 bits (548), Expect = 6e-57
 Identities = 102/115 (88%), Positives = 107/115 (93%)

Query: 1   MESSSNELNAIIEWSRMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRNYRMESKRI 60
           MESSSNELNA+IEWSRMESS+NG EWNHRIESNGI IEW RMESTSNG KRNYRMESKRI
Sbjct: 1   MESSSNELNAVIEWSRMESSSNGMEWNHRIESNGIIIEWNRMESTSNGKKRNYRMESKRI 60

Query: 61  IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIIIERNRMESSLDGNEW 115
           IEWTRMESSNGMEWNNP T+MQSSS+ IEWNHRMDSNGIIIERNRME S +GNEW
Sbjct: 61  IEWTRMESSNGMEWNNPWTQMQSSSHSIEWNHRMDSNGIIIERNRMEPSSNGNEW 115



 Score = 56.2 bits (134), Expect = 6e-09
 Identities = 29/59 (49%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 4   SSNELNAIIEWSRMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRN-YRMESKRII 61
           SSN +     W++M+SS++  EWNHR++SNGI IE  RME +SNG + N ++ME K +I
Sbjct: 68  SSNGMEWNNPWTQMQSSSHSIEWNHRMDSNGIIIERNRMEPSSNGNEWNHHQMEMKGVI 126


>gi|239758079 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 127

 Score =  210 bits (534), Expect = 2e-55
 Identities = 103/115 (89%), Positives = 104/115 (90%)

Query: 1   MESSSNELNAIIEWSRMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRNYRMESKRI 60
           MESSSNELNAIIEWSRMESS+NGKEWNHRIESNGI IEW RM ST NG KRNYRMESKRI
Sbjct: 1   MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGIIIEWNRMVSTPNGKKRNYRMESKRI 60

Query: 61  IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIIIERNRMESSLDGNEW 115
            E TRMESSNGMEWNNP TRMQSSS  IEWNHRMDSNGIIIERNRMESS DGNEW
Sbjct: 61  FERTRMESSNGMEWNNPWTRMQSSSNGIEWNHRMDSNGIIIERNRMESSSDGNEW 115



 Score = 63.5 bits (153), Expect = 4e-11
 Identities = 33/59 (55%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 4   SSNELNAIIEWSRMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRN-YRMESKRII 61
           SSN +     W+RM+SS+NG EWNHR++SNGI IE  RMES+S+G + N +RME K +I
Sbjct: 68  SSNGMEWNNPWTRMQSSSNGIEWNHRMDSNGIIIERNRMESSSDGNEWNHHRMEMKGVI 126


>gi|239758019 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 86

 Score =  150 bits (379), Expect = 2e-37
 Identities = 71/74 (95%), Positives = 71/74 (95%)

Query: 42  MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIII 101
           MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNN RTR QSSSYRIEWNHRMDSNGIII
Sbjct: 1   MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIII 60

Query: 102 ERNRMESSLDGNEW 115
           ERNRMESS DGNEW
Sbjct: 61  ERNRMESSSDGNEW 74



 Score = 56.6 bits (135), Expect = 4e-09
 Identities = 40/86 (46%), Positives = 49/86 (56%), Gaps = 26/86 (30%)

Query: 1  MESSSN--------ELNAIIEWSRMESSANGKEWN----------------HRIESNGIN 36
          MES+SN        E   IIEW+RMESS NG EWN                HR++SNGI 
Sbjct: 1  MESTSNGIKRNYRMESKRIIEWTRMESS-NGMEWNNTRTRKQSSSYRIEWNHRMDSNGII 59

Query: 37 IEWTRMESTSNGIKRN-YRMESKRII 61
          IE  RMES+S+G + N +RME K +I
Sbjct: 60 IERNRMESSSDGNEWNHHRMEMKGVI 85


>gi|239755284 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 62

 Score = 97.1 bits (240), Expect = 3e-21
 Identities = 45/50 (90%), Positives = 46/50 (92%)

Query: 66  MESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIIIERNRMESSLDGNEW 115
           MESSNGMEWNNP TRMQSS  RIEWNHRMDSNGIIIERNRMESS +GNEW
Sbjct: 1   MESSNGMEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEW 50



 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 10/66 (15%)

Query: 1  MESSSNELNAIIEWS----RMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRN-YRM 55
          MESS+      +EW+    RM+SS N  EWNHR++SNGI IE  RMES+SNG + N +RM
Sbjct: 1  MESSNG-----MEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRM 55

Query: 56 ESKRII 61
          E K +I
Sbjct: 56 EMKGVI 61


>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 465

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 38/76 (50%), Positives = 46/76 (60%), Gaps = 16/76 (21%)

Query: 29  RIESNGINIEWTRMESTSNGIKR-NYRMESKRIIEWTRMESSNGMEWNNPRTRMQSSSYR 87
           ++E NGI IEW RME +SNGI R ++RME   +I          +EWN    R  SS   
Sbjct: 404 KMEWNGIIIEWNRMELSSNGINRDHHRMEPNGVI----------IEWN----RKASSCNG 449

Query: 88  IEWNH-RMDSNGIIIE 102
           IEW+H RMDS GIIIE
Sbjct: 450 IEWHHQRMDSKGIIIE 465



 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 29/53 (54%), Positives = 38/53 (71%), Gaps = 2/53 (3%)

Query: 11  IIEWSRMESSANG-KEWNHRIESNGINIEWTRMESTSNGIK-RNYRMESKRII 61
           IIEW+RME S+NG    +HR+E NG+ IEW R  S+ NGI+  + RM+SK II
Sbjct: 411 IIEWNRMELSSNGINRDHHRMEPNGVIIEWNRKASSCNGIEWHHQRMDSKGII 463



 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 16/57 (28%)

Query: 60  IIEWTRME-SSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIIIERNRMESSLDGNEW 115
           IIEW RME SSNG+  ++               HRM+ NG+IIE NR  SS +G EW
Sbjct: 411 IIEWNRMELSSNGINRDH---------------HRMEPNGVIIEWNRKASSCNGIEW 452



 Score = 28.9 bits (63), Expect = 0.97
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 9/37 (24%)

Query: 93  RMDSNGIIIERNRMESSLDG---------NEWIIIEW 120
           +M+ NGIIIE NRME S +G            +IIEW
Sbjct: 404 KMEWNGIIIEWNRMELSSNGINRDHHRMEPNGVIIEW 440


>gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens]
          Length = 296

 Score = 53.5 bits (127), Expect = 4e-08
 Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 14/67 (20%)

Query: 7  ELNAIIEWSRMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRN-YRMESKRIIEWTR 65
          E NAIIEW+R           HR+ESN I I+W RME  SNG++ N ++MES  IIEW R
Sbjct: 2  ESNAIIEWNR-----------HRMESNAIIIKWNRME--SNGVEWNHHQMESSGIIEWIR 48

Query: 66 MESSNGM 72
          +     M
Sbjct: 49 VSVQTAM 55



 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 27/71 (38%)

Query: 30  IESNGINIEWTRMESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNPRTRMQSSSYRIE 89
           +ESN I IEW R    SN I          II+W RMES NG+EWN              
Sbjct: 1   MESNAI-IEWNRHRMESNAI----------IIKWNRMES-NGVEWN-------------- 34

Query: 90  WNHRMDSNGII 100
            +H+M+S+GII
Sbjct: 35  -HHQMESSGII 44



 Score = 38.5 bits (88), Expect = 0.001
 Identities = 24/42 (57%), Positives = 27/42 (64%), Gaps = 11/42 (26%)

Query: 88  IEWN-HRMDSNGIIIERNRMESSLDGNEWI--------IIEW 120
           IEWN HRM+SN III+ NRMES  +G EW         IIEW
Sbjct: 7   IEWNRHRMESNAIIIKWNRMES--NGVEWNHHQMESSGIIEW 46


>gi|109689695 transient receptor potential cation channel, subfamily
           M, member 8 [Homo sapiens]
          Length = 1104

 Score = 33.9 bits (76), Expect = 0.030
 Identities = 22/77 (28%), Positives = 37/77 (48%)

Query: 2   ESSSNELNAIIEWSRMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRNYRMESKRII 61
           ES    L  I+E S + +    +E    I SN I+    +  STS   K N+  + K ++
Sbjct: 375 ESWIKWLKEILECSHLLTVIKMEEAGDEIVSNAISYALYKAFSTSEQDKDNWNGQLKLLL 434

Query: 62  EWTRMESSNGMEWNNPR 78
           EW +++ +N   + N R
Sbjct: 435 EWNQLDLANDEIFTNDR 451


>gi|54633319 PDZ domain-containing guanine nucleotide exchange factor
            I [Homo sapiens]
          Length = 1601

 Score = 29.6 bits (65), Expect = 0.57
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 39   WTRMESTSNGIKRNYRMESKRIIEWTRMESSNGME 73
            WT   S S+  + NY    +R++E T  ESS G++
Sbjct: 1433 WTSSSSLSDTYEPNYGTVKRRVLESTPAESSEGLD 1467


>gi|11141889 WW45 protein [Homo sapiens]
          Length = 383

 Score = 27.7 bits (60), Expect = 2.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 17  MESSANGKEWNHRIESNGINIEWTRMESTSNG 48
           ++ + N   W+H +E  G+   W R+ES+  G
Sbjct: 218 IDHNTNTTHWSHPLEREGLPPGWERVESSEFG 249


>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
          Length = 712

 Score = 27.7 bits (60), Expect = 2.2
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 61  IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIIIERNRMESSLDGNEWIIIEW 120
           +EW+ +         NP+ R+      ++ N R+   G I++ N  E       W +++W
Sbjct: 275 LEWSAVIVDEAHRIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKEL------WCVMDW 328


>gi|190358501 hypothetical protein LOC55435 isoform b [Homo sapiens]
          Length = 269

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 31  ESNGINIEWTRMESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNPRTRMQSSSYRIEW 90
           +S  +++EW   E  +  +    R +++  I    ++ SN    +NP T     S  +EW
Sbjct: 169 DSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNP-TSASDDSNGLEW 227

Query: 91  NH-----RMDSNG 98
            +      MD NG
Sbjct: 228 ENDFVSAEMDDNG 240


>gi|190358499 hypothetical protein LOC55435 isoform a [Homo sapiens]
          Length = 302

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 31  ESNGINIEWTRMESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNPRTRMQSSSYRIEW 90
           +S  +++EW   E  +  +    R +++  I    ++ SN    +NP T     S  +EW
Sbjct: 202 DSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNP-TSASDDSNGLEW 260

Query: 91  NH-----RMDSNG 98
            +      MD NG
Sbjct: 261 ENDFVSAEMDDNG 273


>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
          Length = 1462

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 18/95 (18%)

Query: 15   SRMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRNYRMESKRIIEWTRMESSNGMEW 74
            SR  S +  K   HR  S    + ++   S S     +YR  S     ++R  S     +
Sbjct: 1315 SRSRSKSETKS-RHRTRS----VSYSHSRSRSRSSTSSYRSRS-----YSRSRSRGW--Y 1362

Query: 75   NNPRTRMQSSSYRIEWNHRMDSNGIIIERNRMESS 109
            +  RTR +SSSYR   +HR  S      R+R  SS
Sbjct: 1363 SRGRTRSRSSSYRSYKSHRTSS------RSRSRSS 1391


>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
          Length = 1670

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 12/85 (14%)

Query: 13  EWSRMESSANGKEWNHRIE-----SNGINIEWTRMESTSNGIKR----NYRMESKRIIEW 63
           EW R +     +EW  ++E          +E  R E     I+R       +E +R +EW
Sbjct: 403 EWERKQRELQEQEWKKQLELEKRLEKQRELERQREEERRKDIERREAAKQELERQRRLEW 462

Query: 64  TRMESSNGMEWNNPRTRMQSSSYRI 88
            R+      E  N + R Q    R+
Sbjct: 463 ERIRR---QELLNQKNREQEEIVRL 484


>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
          Length = 1697

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 12/85 (14%)

Query: 13  EWSRMESSANGKEWNHRIE-----SNGINIEWTRMESTSNGIKR----NYRMESKRIIEW 63
           EW R +     +EW  ++E          +E  R E     I+R       +E +R +EW
Sbjct: 403 EWERKQRELQEQEWKKQLELEKRLEKQRELERQREEERRKDIERREAAKQELERQRRLEW 462

Query: 64  TRMESSNGMEWNNPRTRMQSSSYRI 88
            R+      E  N + R Q    R+
Sbjct: 463 ERIRR---QELLNQKNREQEEIVRL 484


>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
          Length = 1249

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 12/85 (14%)

Query: 13  EWSRMESSANGKEWNHRIE-----SNGINIEWTRMESTSNGIKR----NYRMESKRIIEW 63
           EW R +     +EW  ++E          +E  R E     I+R       +E +R +EW
Sbjct: 403 EWERKQRELQEQEWKKQLELEKRLEKQRELERQREEERRKDIERREAAKQELERQRRLEW 462

Query: 64  TRMESSNGMEWNNPRTRMQSSSYRI 88
            R+      E  N + R Q    R+
Sbjct: 463 ERIRR---QELLNQKNREQEEIVRL 484


>gi|23618926 zinc finger protein 559 [Homo sapiens]
          Length = 538

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 38 EWTRMESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNPRTRM----QSSSYRIEWNH 92
          EWT ++ T   + R+  +E+ + +     ES    +W+ P+        SS   +E NH
Sbjct: 27 EWTLLDQTQRNLYRDVMLENYKNLVAVDWESHINTKWSAPQQNFLQGKTSSVVEMERNH 85


>gi|116008447 CAP-GLY domain containing linker protein 2 isoform 1
           [Homo sapiens]
          Length = 1046

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 28  HRIESNGINIEWTRMESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNPRTRMQSSSYR 87
           H IESN I+ E  R + T  G++       K +   T        + +   ++ +S   +
Sbjct: 807 HMIESNDISEETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKK 866

Query: 88  IEWNHRMDSNGIIIERNRMESSLD 111
           ++         ++ E+ R+E+ L+
Sbjct: 867 VD--------ALLKEKRRLEAELE 882


>gi|14702162 CAP-GLY domain containing linker protein 2 isoform 2
           [Homo sapiens]
          Length = 1011

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 28  HRIESNGINIEWTRMESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNPRTRMQSSSYR 87
           H IESN I+ E  R + T  G++       K +   T        + +   ++ +S   +
Sbjct: 772 HMIESNDISEETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKK 831

Query: 88  IEWNHRMDSNGIIIERNRMESSLD 111
           ++         ++ E+ R+E+ L+
Sbjct: 832 VD--------ALLKEKRRLEAELE 847


>gi|119120894 Dmx-like 2 [Homo sapiens]
          Length = 3036

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 61   IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDS 96
            IEW+ + SS   +W+ P  ++      ++W    DS
Sbjct: 1950 IEWSNVTSSQ-YDWSQPIVKVDEEPLNLDWGEDHDS 1984


>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
          Length = 1603

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 18   ESSANGKEWNHRIESNGINIEWTRMESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNP 77
            ESS++  ++N  +   G        E++S+  + +     K +++W    S+ G  WN  
Sbjct: 1165 ESSSDSTQFNQPVGGGGFRR--ANSEASSSEGQSSLSSLEKLMMDWNEASSAPGYNWNQ- 1221

Query: 78   RTRMQSSS 85
                QSSS
Sbjct: 1222 SVLFQSSS 1229


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.124    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,238,915
Number of Sequences: 37866
Number of extensions: 141781
Number of successful extensions: 390
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 38
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.