Guide to the Human Genome
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Name: LOC100290557 Sequence: fasta or formatted (112aa) NCBI GI: 239752154
Description:

PREDICTED: hypothetical protein XP_002348155

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4          6           1
 C cysteine            3.6          4           1
 D aspartate           1.8          2           1
 E glutamate           3.6          4           2
 F phenylalanine       0.9          1           1
 G glycine             9.8         11           1
 H histidine           3.6          4           1
 I isoleucine          5.4          6           1
 K lysine              3.6          4           1
 L leucine             5.4          6           2
 M methionine          1.8          2           1
 N asparagine          2.7          3           2
 P proline            11.6         13           2
 Q glutamine           6.2          7           2
 R arginine           10.7         12           2
 S serine              9.8         11           3
 T threonine           5.4          6           1
 V valine              3.6          4           1
 W tryptophan          2.7          3           1
 Y tyrosine            2.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348155 
LOC100290481          0.324   PREDICTED: hypothetical protein XP_002348153 
LOC100293440          0.265   PREDICTED: similar to Ig lambda chain 
LOC100293277          0.155   PREDICTED: similar to hCG2040021 
LOC100291786          0.128   PREDICTED: similar to hCG2043206 
LOC440871             0.123   PREDICTED: similar to hCG2043206 
LOC100291682          0.123   PREDICTED: similar to hCG1686089 
LOC100290992          0.123   PREDICTED: hypothetical protein XP_002347049 
LOC651536             0.119   PREDICTED: similar to hCG96018 
LOC651536             0.119   PREDICTED: similar to hCG96018 
LOC642424             0.105   PREDICTED: similar to hCG1742442 
LOC642424             0.105   PREDICTED: similar to hCG1742442 
LOC642424             0.105   PREDICTED: similar to hCG1742442 
LOC100287723          0.105   PREDICTED: hypothetical protein XP_002342271 
LOC100293142          0.105   PREDICTED: similar to hCG2040019 
LOC652493             0.105   PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...
LOC100291731          0.100   PREDICTED: similar to hCG36857 
LOC650405             0.100   PREDICTED: similar to hCG2042707 
LOC100291027          0.100   PREDICTED: hypothetical protein XP_002348323 
LOC100290819          0.100   PREDICTED: hypothetical protein XP_002348319 
LOC642838             0.100   PREDICTED: similar to hCG1742442 
VPREB1                0.100   immunoglobulin iota chain precursor 
LOC100130100          0.100   PREDICTED: similar to hCG26659 
LOC100291464          0.100   PREDICTED: hypothetical protein XP_002346449 
LOC100130100          0.100   PREDICTED: similar to hCG26659 
LOC439957             0.096   PREDICTED: similar to hCG1742442 
LOC439957             0.096   PREDICTED: similar to hCG1742442 
LOC100132426          0.087   PREDICTED: similar to hCG1742442 
LOC100288993          0.087   PREDICTED: hypothetical protein XP_002342967 
VPREB3                0.082   pre-B lymphocyte 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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