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Search of human proteins with 239757572
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757572 PREDICTED: hypothetical protein [Homo sapiens]
(97 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757572 PREDICTED: hypothetical protein [Homo sapiens] 207 2e-54
gi|239752082 PREDICTED: hypothetical protein XP_002348102 [Homo ... 207 2e-54
gi|239746579 PREDICTED: hypothetical protein XP_002343785 [Homo ... 207 2e-54
gi|93277088 mediator of RNA polymerase II transcription, subunit... 29 0.71
gi|20127448 DNA-directed DNA polymerase alpha 2 [Homo sapiens] 27 2.7
gi|188219575 putative homeodomain transcription factor 2 isoform... 27 3.5
gi|188219573 putative homeodomain transcription factor 2 isoform... 27 3.5
gi|188219571 putative homeodomain transcription factor 2 isoform... 27 3.5
gi|188219569 putative homeodomain transcription factor 2 isoform... 27 3.5
gi|188219565 putative homeodomain transcription factor 2 isoform... 27 3.5
gi|9945320 cyclin L1 [Homo sapiens] 27 3.5
gi|239754361 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239748908 PREDICTED: hypothetical protein XP_002346853 [Homo ... 27 4.6
gi|239742932 PREDICTED: hypothetical protein XP_002342691 [Homo ... 27 4.6
gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens] 27 4.6
gi|183396804 Regulation of nuclear pre-mRNA domain containing 2 ... 27 4.6
gi|55742730 storkhead box 2 [Homo sapiens] 27 4.6
gi|24234760 chondrosarcoma associated gene 1 [Homo sapiens] 26 6.0
gi|156547151 chondrosarcoma associated gene 1 [Homo sapiens] 26 6.0
gi|153070262 meprin A alpha [Homo sapiens] 26 6.0
gi|34996489 pleckstrin homology domain interacting protein [Homo... 26 6.0
gi|56711322 ring finger protein 43 [Homo sapiens] 26 7.8
>gi|239757572 PREDICTED: hypothetical protein [Homo sapiens]
Length = 97
Score = 207 bits (526), Expect = 2e-54
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MTEGTACWKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPRSHSPEDNQHEGHMQKH 60
MTEGTACWKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPRSHSPEDNQHEGHMQKH
Sbjct: 1 MTEGTACWKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPRSHSPEDNQHEGHMQKH 60
Query: 61 KRARGALGNVRSYILLDPRISESLPYDSSPLTCKYIA 97
KRARGALGNVRSYILLDPRISESLPYDSSPLTCKYIA
Sbjct: 61 KRARGALGNVRSYILLDPRISESLPYDSSPLTCKYIA 97
>gi|239752082 PREDICTED: hypothetical protein XP_002348102 [Homo
sapiens]
Length = 97
Score = 207 bits (526), Expect = 2e-54
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MTEGTACWKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPRSHSPEDNQHEGHMQKH 60
MTEGTACWKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPRSHSPEDNQHEGHMQKH
Sbjct: 1 MTEGTACWKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPRSHSPEDNQHEGHMQKH 60
Query: 61 KRARGALGNVRSYILLDPRISESLPYDSSPLTCKYIA 97
KRARGALGNVRSYILLDPRISESLPYDSSPLTCKYIA
Sbjct: 61 KRARGALGNVRSYILLDPRISESLPYDSSPLTCKYIA 97
>gi|239746579 PREDICTED: hypothetical protein XP_002343785 [Homo
sapiens]
Length = 97
Score = 207 bits (526), Expect = 2e-54
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MTEGTACWKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPRSHSPEDNQHEGHMQKH 60
MTEGTACWKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPRSHSPEDNQHEGHMQKH
Sbjct: 1 MTEGTACWKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPRSHSPEDNQHEGHMQKH 60
Query: 61 KRARGALGNVRSYILLDPRISESLPYDSSPLTCKYIA 97
KRARGALGNVRSYILLDPRISESLPYDSSPLTCKYIA
Sbjct: 61 KRARGALGNVRSYILLDPRISESLPYDSSPLTCKYIA 97
>gi|93277088 mediator of RNA polymerase II transcription, subunit 12
homolog (S. cerevisiae)-like [Homo sapiens]
Length = 2145
Score = 29.3 bits (64), Expect = 0.71
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 19 RGVWTVSPLTIRSTGTNKMRKLRAPRSHSPEDNQHEGHMQKHKRARGALGNVRSYILLDP 78
RGVW V+PL R + + R L+A E QH G K +R R +S LL
Sbjct: 1409 RGVWLVAPLIARLPTSVQGRVLKA-AGEELEKGQHLGSSSKKERDR---QKQKSMSLLSQ 1464
Query: 79 RISESLPYDSSPLTC 93
+ P+ S LTC
Sbjct: 1465 Q-----PFLSLVLTC 1474
>gi|20127448 DNA-directed DNA polymerase alpha 2 [Homo sapiens]
Length = 598
Score = 27.3 bits (59), Expect = 2.7
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 24/94 (25%)
Query: 25 SPLTIRSTGTNKMRKLRAPRSHSPEDNQHEGHMQKHKR----------------ARGALG 68
+PLT RS T +L +P S SP + + + R RG G
Sbjct: 130 TPLTKRSVSTRSPHQLLSPSSFSPSATPSQKYNSRSNRGEVVTSFGLAQGVSWSGRGGAG 189
Query: 69 NVRSYILLDPR--------ISESLPYDSSPLTCK 94
N+ +L P + + LP LTCK
Sbjct: 190 NISLKVLGCPEALTGSYKSMFQKLPDIREVLTCK 223
>gi|188219575 putative homeodomain transcription factor 2 isoform 4
[Homo sapiens]
Length = 352
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 8 WKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPR---------SHSPEDNQHEGHMQ 58
W + G C+ V T +P STG + RKLR S DN EG +Q
Sbjct: 136 WLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQ 195
Query: 59 KH 60
H
Sbjct: 196 NH 197
>gi|188219573 putative homeodomain transcription factor 2 isoform 3
[Homo sapiens]
Length = 356
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 8 WKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPR---------SHSPEDNQHEGHMQ 58
W + G C+ V T +P STG + RKLR S DN EG +Q
Sbjct: 140 WLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQ 199
Query: 59 KH 60
H
Sbjct: 200 NH 201
>gi|188219571 putative homeodomain transcription factor 2 isoform 2
[Homo sapiens]
Length = 747
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 8 WKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPR---------SHSPEDNQHEGHMQ 58
W + G C+ V T +P STG + RKLR S DN EG +Q
Sbjct: 136 WLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQ 195
Query: 59 KH 60
H
Sbjct: 196 NH 197
>gi|188219569 putative homeodomain transcription factor 2 isoform 1
[Homo sapiens]
Length = 751
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 8 WKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPR---------SHSPEDNQHEGHMQ 58
W + G C+ V T +P STG + RKLR S DN EG +Q
Sbjct: 140 WLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQ 199
Query: 59 KH 60
H
Sbjct: 200 NH 201
>gi|188219565 putative homeodomain transcription factor 2 isoform 2
[Homo sapiens]
Length = 747
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 8 WKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPR---------SHSPEDNQHEGHMQ 58
W + G C+ V T +P STG + RKLR S DN EG +Q
Sbjct: 136 WLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQ 195
Query: 59 KH 60
H
Sbjct: 196 NH 197
>gi|9945320 cyclin L1 [Homo sapiens]
Length = 526
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 32 TGTNKMRKLRAPRSHSPEDNQHEGHMQKHKRARGALGNVRS 72
+GT R RSHS +H H H +A+ +++S
Sbjct: 419 SGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTRDDLKS 459
>gi|239754361 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 29 IRSTGTNKMRKLRAPRSHSPEDNQHEGHM--QKHKR---ARGALGNVRS 72
+R T+ R LR P SH H GH+ Q H R GAL R+
Sbjct: 95 LRRNSTSPARPLRPPSSHPAPSRTHLGHVITQCHVRRGHVPGALARRRA 143
>gi|239748908 PREDICTED: hypothetical protein XP_002346853 [Homo
sapiens]
Length = 165
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 29 IRSTGTNKMRKLRAPRSHSPEDNQHEGHM--QKHKR---ARGALGNVRS 72
+R T+ R LR P SH H GH+ Q H R GAL R+
Sbjct: 95 LRRNSTSPARPLRPPSSHPAPSRTHLGHVITQCHVRRGHVPGALARRRA 143
>gi|239742932 PREDICTED: hypothetical protein XP_002342691 [Homo
sapiens]
Length = 165
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 29 IRSTGTNKMRKLRAPRSHSPEDNQHEGHM--QKHKR---ARGALGNVRS 72
+R T+ R LR P SH H GH+ Q H R GAL R+
Sbjct: 95 LRRNSTSPARPLRPPSSHPAPSRTHLGHVITQCHVRRGHVPGALARRRA 143
>gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens]
Length = 1834
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 40 LRAPRSHSPEDNQH-EGHMQKHKRARGALGNVRSYILLDPRISESLPYDSSPLT 92
L P+ SP + H G R+RG V S LL P + D S LT
Sbjct: 1037 LGPPQGGSPRGSHHTSGSSLSTPRSRGGTSQVGSPTLLSPAVPSKQKRDRSILT 1090
>gi|183396804 Regulation of nuclear pre-mRNA domain containing 2 [Homo
sapiens]
Length = 1461
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 14 GLEPCRGVWTVSPLTIRSTGTNKMRKLRAPRSHSPEDNQHEG 55
G P GV V TI +T T + + + S P D++H G
Sbjct: 986 GHPPTSGVEKVLASTISTTSTIEFKNMLKNASRKPSDDKHFG 1027
>gi|55742730 storkhead box 2 [Homo sapiens]
Length = 926
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 36 KMRKLRAPRSHSPEDNQHEGHMQKHKRARGALGNVRSYILLDPRISESLPYDSSPL 91
K+ + +A RS + H G +K + R + G RS+ R+S+ P D S L
Sbjct: 336 KLEEEKAQRSKAGSSAHHSGRSKKSRTHRKSHGKSRSH--SKTRVSKGDPSDGSHL 389
>gi|24234760 chondrosarcoma associated gene 1 [Homo sapiens]
Length = 78
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 1 MTEGTACWKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPRSHSPEDNQHEGHMQKH 60
M+ TACW L RG R TG KM R PR+ SP N H ++
Sbjct: 1 MSATTACWPAFTV-LGEARGDQVDWSRLYRDTGLVKMS--RKPRASSPFSNNHPSTPKRF 57
Query: 61 KR 62
R
Sbjct: 58 PR 59
>gi|156547151 chondrosarcoma associated gene 1 [Homo sapiens]
Length = 78
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 1 MTEGTACWKVRQPGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPRSHSPEDNQHEGHMQKH 60
M+ TACW L RG R TG KM R PR+ SP N H ++
Sbjct: 1 MSATTACWPAFTV-LGEARGDQVDWSRLYRDTGLVKMS--RKPRASSPFSNNHPSTPKRF 57
Query: 61 KR 62
R
Sbjct: 58 PR 59
>gi|153070262 meprin A alpha [Homo sapiens]
Length = 746
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 17 PC-RGVWTVSPLTIRSTGTNKMRKLRAPRSHSPE 49
PC GVWTV + T+K KL++PR ++ E
Sbjct: 430 PCPTGVWTVRNFSQVLENTSKGDKLQSPRFYNSE 463
>gi|34996489 pleckstrin homology domain interacting protein [Homo
sapiens]
Length = 1821
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 13 PGLEPCRGVWTVSPLTIRSTGTNKMRKLRAPRSHSPEDNQHEGHMQKHK-RARGALGNVR 71
PG E CR + + + S+G N++ +A + SP D+ + Q+ R G G
Sbjct: 607 PGRENCREEQLIPQMGVTSSGLNQVLSQQANQEISPLDSMIQRLQQEQDLRRSGEAGISN 666
Query: 72 SYILLDPRISESLPYDSSP 90
+ L IS + S P
Sbjct: 667 TSRLSRGSISSTSEVHSPP 685
>gi|56711322 ring finger protein 43 [Homo sapiens]
Length = 783
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 52 QHEGHMQKHKRARGALGNVRSYILLDPRISESLP 85
QH GH H A LG RS + PR LP
Sbjct: 344 QHPGHAHYHLPAAYLLGPSRSAVARPPRPGPFLP 377
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,367,056
Number of Sequences: 37866
Number of extensions: 179411
Number of successful extensions: 485
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 474
Number of HSP's gapped (non-prelim): 23
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.