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Search of human proteins with 239757471
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757471 PREDICTED: hypothetical protein [Homo sapiens]
(217 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757471 PREDICTED: hypothetical protein [Homo sapiens] 472 e-133
gi|239751989 PREDICTED: hypothetical protein XP_002348071 [Homo ... 472 e-133
gi|239746474 PREDICTED: hypothetical protein XP_002343753 [Homo ... 472 e-133
gi|21735594 programmed cell death 2 isoform 2 [Homo sapiens] 32 0.32
gi|21735592 programmed cell death 2 isoform 1 [Homo sapiens] 32 0.32
gi|188528652 hypothetical protein LOC745 isoform 2 [Homo sapiens] 31 0.92
gi|239745034 PREDICTED: hypothetical protein XP_002343337 [Homo ... 30 2.1
gi|51558777 ATP synthase, H+ transporting, mitochondrial F0 comp... 30 2.1
gi|94536830 DMRT-like family C2 [Homo sapiens] 30 2.1
gi|51558774 ATP synthase, H+ transporting, mitochondrial F0 comp... 30 2.1
gi|51558768 ATP synthase, H+ transporting, mitochondrial F0 comp... 30 2.1
gi|239746480 PREDICTED: hypothetical protein XP_002343771 [Homo ... 29 2.7
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 29 2.7
gi|157388925 solute carrier family 25, member 38 [Homo sapiens] 29 2.7
gi|5729858 nuclear receptor coactivator 2 [Homo sapiens] 29 3.5
gi|15451844 ADAM metallopeptidase domain 19 preproprotein [Homo ... 29 3.5
gi|150170670 piccolo isoform 2 [Homo sapiens] 28 4.6
gi|150378539 piccolo isoform 1 [Homo sapiens] 28 4.6
gi|7019335 hypothetical protein LOC745 isoform 1 [Homo sapiens] 28 4.6
gi|15826862 coiled-coil domain containing 120 isoform 3 [Homo sa... 28 6.0
gi|254039614 coiled-coil domain containing 120 isoform 4 [Homo s... 28 6.0
gi|254039612 coiled-coil domain containing 120 isoform 2 [Homo s... 28 6.0
gi|254039610 coiled-coil domain containing 120 isoform 1 [Homo s... 28 6.0
gi|206725526 signal-induced proliferation-associated protein 1 [... 28 6.0
gi|206725523 signal-induced proliferation-associated protein 1 [... 28 6.0
gi|144953895 nidogen 2 precursor [Homo sapiens] 28 6.0
gi|71274186 hypothetical protein LOC85449 [Homo sapiens] 28 7.8
>gi|239757471 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 472 bits (1214), Expect = e-133
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 MTTWEELQFKSDSKAFSPNPGQHTQPGRVAQDISTAQSPTRHFTDVDLQVFCDLPRVMLV 60
MTTWEELQFKSDSKAFSPNPGQHTQPGRVAQDISTAQSPTRHFTDVDLQVFCDLPRVMLV
Sbjct: 1 MTTWEELQFKSDSKAFSPNPGQHTQPGRVAQDISTAQSPTRHFTDVDLQVFCDLPRVMLV 60
Query: 61 GSKAGKTDSVPPAVFSPRWIRHYTQKRDFGIIDSGVILMFFSVTELLCPHPSRECPREPV 120
GSKAGKTDSVPPAVFSPRWIRHYTQKRDFGIIDSGVILMFFSVTELLCPHPSRECPREPV
Sbjct: 61 GSKAGKTDSVPPAVFSPRWIRHYTQKRDFGIIDSGVILMFFSVTELLCPHPSRECPREPV 120
Query: 121 GCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAFSVPRPP 180
GCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAFSVPRPP
Sbjct: 121 GCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAFSVPRPP 180
Query: 181 TAFLYPGPNHNPITSCPKNLCLQDQVHATELGVCGPF 217
TAFLYPGPNHNPITSCPKNLCLQDQVHATELGVCGPF
Sbjct: 181 TAFLYPGPNHNPITSCPKNLCLQDQVHATELGVCGPF 217
>gi|239751989 PREDICTED: hypothetical protein XP_002348071 [Homo
sapiens]
Length = 217
Score = 472 bits (1214), Expect = e-133
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 MTTWEELQFKSDSKAFSPNPGQHTQPGRVAQDISTAQSPTRHFTDVDLQVFCDLPRVMLV 60
MTTWEELQFKSDSKAFSPNPGQHTQPGRVAQDISTAQSPTRHFTDVDLQVFCDLPRVMLV
Sbjct: 1 MTTWEELQFKSDSKAFSPNPGQHTQPGRVAQDISTAQSPTRHFTDVDLQVFCDLPRVMLV 60
Query: 61 GSKAGKTDSVPPAVFSPRWIRHYTQKRDFGIIDSGVILMFFSVTELLCPHPSRECPREPV 120
GSKAGKTDSVPPAVFSPRWIRHYTQKRDFGIIDSGVILMFFSVTELLCPHPSRECPREPV
Sbjct: 61 GSKAGKTDSVPPAVFSPRWIRHYTQKRDFGIIDSGVILMFFSVTELLCPHPSRECPREPV 120
Query: 121 GCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAFSVPRPP 180
GCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAFSVPRPP
Sbjct: 121 GCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAFSVPRPP 180
Query: 181 TAFLYPGPNHNPITSCPKNLCLQDQVHATELGVCGPF 217
TAFLYPGPNHNPITSCPKNLCLQDQVHATELGVCGPF
Sbjct: 181 TAFLYPGPNHNPITSCPKNLCLQDQVHATELGVCGPF 217
>gi|239746474 PREDICTED: hypothetical protein XP_002343753 [Homo
sapiens]
Length = 217
Score = 472 bits (1214), Expect = e-133
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 MTTWEELQFKSDSKAFSPNPGQHTQPGRVAQDISTAQSPTRHFTDVDLQVFCDLPRVMLV 60
MTTWEELQFKSDSKAFSPNPGQHTQPGRVAQDISTAQSPTRHFTDVDLQVFCDLPRVMLV
Sbjct: 1 MTTWEELQFKSDSKAFSPNPGQHTQPGRVAQDISTAQSPTRHFTDVDLQVFCDLPRVMLV 60
Query: 61 GSKAGKTDSVPPAVFSPRWIRHYTQKRDFGIIDSGVILMFFSVTELLCPHPSRECPREPV 120
GSKAGKTDSVPPAVFSPRWIRHYTQKRDFGIIDSGVILMFFSVTELLCPHPSRECPREPV
Sbjct: 61 GSKAGKTDSVPPAVFSPRWIRHYTQKRDFGIIDSGVILMFFSVTELLCPHPSRECPREPV 120
Query: 121 GCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAFSVPRPP 180
GCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAFSVPRPP
Sbjct: 121 GCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAFSVPRPP 180
Query: 181 TAFLYPGPNHNPITSCPKNLCLQDQVHATELGVCGPF 217
TAFLYPGPNHNPITSCPKNLCLQDQVHATELGVCGPF
Sbjct: 181 TAFLYPGPNHNPITSCPKNLCLQDQVHATELGVCGPF 217
>gi|21735594 programmed cell death 2 isoform 2 [Homo sapiens]
Length = 228
Score = 32.3 bits (72), Expect = 0.32
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 112 SRECPREPVGCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQITSELCGQPPC------ 165
S + P + G WL ++ LP L E +C R Q+ + L G+P
Sbjct: 24 SEQFPSKVGGRPAWLGAAGLPGPQALACE---LCGRPLSFLLQVYAPLPGRPDAFHRCIF 80
Query: 166 -------PLCCQSRAF--SVPRPPTAFLYPGPNHNPITSCPKNLCLQDQVHATELGVCG 215
P C R F +PR + Y P+ NP +++CLQ + A VCG
Sbjct: 81 LFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPETGESVCLQLKSGAHLCRVCG 139
>gi|21735592 programmed cell death 2 isoform 1 [Homo sapiens]
Length = 344
Score = 32.3 bits (72), Expect = 0.32
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 112 SRECPREPVGCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQITSELCGQPPC------ 165
S + P + G WL ++ LP L E +C R Q+ + L G+P
Sbjct: 24 SEQFPSKVGGRPAWLGAAGLPGPQALACE---LCGRPLSFLLQVYAPLPGRPDAFHRCIF 80
Query: 166 -------PLCCQSRAF--SVPRPPTAFLYPGPNHNPITSCPKNLCLQDQVHATELGVCG 215
P C R F +PR + Y P+ NP +++CLQ + A VCG
Sbjct: 81 LFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPETGESVCLQLKSGAHLCRVCG 139
>gi|188528652 hypothetical protein LOC745 isoform 2 [Homo sapiens]
Length = 1151
Score = 30.8 bits (68), Expect = 0.92
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 15/94 (15%)
Query: 104 TELLCPHPSRECPREPVGCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQI-----TSE 158
+E LCP S+ G S LPG+ +P L+ LTS T +
Sbjct: 823 SEALCPWSSQS-----FGTTQLRQSPLTTGLPGI--QPSLLLVTTSLTSSAPGSAVRTLD 875
Query: 159 LCGQPPCPLCCQSRAFSVPRPPTAFLYPGPNHNP 192
+C PCP+ C S S PT GP+ NP
Sbjct: 876 MCSSHPCPVICCS---SPTTNPTTGPSLGPSFNP 906
>gi|239745034 PREDICTED: hypothetical protein XP_002343337 [Homo
sapiens]
Length = 143
Score = 29.6 bits (65), Expect = 2.1
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 160 CGQPPCPLCCQSRAFSVPRPPTAFLYPGPNHNPITSCPKNLCLQ 203
C +PP RAF +P P P +H I CP L LQ
Sbjct: 48 CAKPP-------RAFGLPSPSGCISSPATSHLHIRPCPAPLSLQ 84
>gi|51558777 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit s isoform b precursor [Homo sapiens]
Length = 127
Score = 29.6 bits (65), Expect = 2.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 138 VTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAF 174
V+E L C + + +I+ +LCG P C SR F
Sbjct: 5 VSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYF 41
>gi|94536830 DMRT-like family C2 [Homo sapiens]
Length = 367
Score = 29.6 bits (65), Expect = 2.1
Identities = 28/99 (28%), Positives = 34/99 (34%), Gaps = 31/99 (31%)
Query: 106 LLCPHPSRECPREPVGCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQITSELCGQPP- 164
LL HP P S+ P+ PG W+ H + PP
Sbjct: 155 LLLSHPPEASPL-----------SWTPVPPG-----------PWVPGHWLPPGFSMPPPV 192
Query: 165 -CPLCCQSRAFSVPRPPTAFLYPG-----PNHNPITSCP 197
C L Q A S+P P PG P H P T+CP
Sbjct: 193 VCRLLYQEPAVSLP--PFPGFDPGTSLQLPTHGPFTTCP 229
>gi|51558774 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit s isoform a precursor [Homo sapiens]
Length = 215
Score = 29.6 bits (65), Expect = 2.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 138 VTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAF 174
V+E L C + + +I+ +LCG P C SR F
Sbjct: 5 VSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYF 41
>gi|51558768 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit s isoform c precursor [Homo sapiens]
Length = 136
Score = 29.6 bits (65), Expect = 2.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 138 VTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAF 174
V+E L C + + +I+ +LCG P C SR F
Sbjct: 5 VSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYF 41
>gi|239746480 PREDICTED: hypothetical protein XP_002343771 [Homo
sapiens]
Length = 130
Score = 29.3 bits (64), Expect = 2.7
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 177 PRPPTAFLYPGPNHNPITSCPK---NLCLQDQVHAT 209
PRPPT+F PG P T+C K NL L+D + +T
Sbjct: 64 PRPPTSFSLPGA--LPTTTCAKARENLQLRDVLSST 97
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 29.3 bits (64), Expect = 2.7
Identities = 22/47 (46%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 163 PPCPLCCQSRAFSVPRPPTAFLYPGPN---HNPITSCPKNLCLQDQV 206
PP PLC +SR P PP A PGPN H P+ P LQD V
Sbjct: 224 PPLPLC-RSRWVLAPPPPPA--PPGPNAAAHPPLR--PPRARLQDPV 265
>gi|157388925 solute carrier family 25, member 38 [Homo sapiens]
Length = 304
Score = 29.3 bits (64), Expect = 2.7
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 94 SGVILMFFSVTELLCPHPSRECPREPVGCCDWLYSSFLPILPGLVTEP 141
SG+ LMF++ T+ + PH + P+ ++ F IL LVT+P
Sbjct: 192 SGIYLMFYNQTKNIVPHDQVDATLIPI--TNFSCGIFAGILASLVTQP 237
>gi|5729858 nuclear receptor coactivator 2 [Homo sapiens]
Length = 1464
Score = 28.9 bits (63), Expect = 3.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 102 SVTELLCPHPSRECPREPVGCCDWLY 127
S +LLCPHP+ E P + D LY
Sbjct: 1059 SPDDLLCPHPAAESPSDEGALLDQLY 1084
>gi|15451844 ADAM metallopeptidase domain 19 preproprotein [Homo
sapiens]
Length = 918
Score = 28.9 bits (63), Expect = 3.5
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 163 PPCPLCCQSRAFSVPRPPTAFLYPGP 188
PP P C S+ FS PRPP L P
Sbjct: 841 PPAPNCIVSQDFSRPRPPQKALPANP 866
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 28.5 bits (62), Expect = 4.6
Identities = 26/85 (30%), Positives = 30/85 (35%), Gaps = 8/85 (9%)
Query: 102 SVTELLCPHPSRECPREPVGCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQITSELCG 161
S T L PH ++ PR + LP PG T+ S ITS G
Sbjct: 2556 SPTSPLSPHSNKSSPRFSKSLTETYVVITLPSEPGTPTDSS--------ASQAITSWPLG 2607
Query: 162 QPPCPLCCQSRAFSVPRPPTAFLYP 186
P L FSV P TA P
Sbjct: 2608 SPSKDLVSVEPVFSVVPPVTAVEIP 2632
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 28.5 bits (62), Expect = 4.6
Identities = 26/85 (30%), Positives = 30/85 (35%), Gaps = 8/85 (9%)
Query: 102 SVTELLCPHPSRECPREPVGCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQITSELCG 161
S T L PH ++ PR + LP PG T+ S ITS G
Sbjct: 2556 SPTSPLSPHSNKSSPRFSKSLTETYVVITLPSEPGTPTDSS--------ASQAITSWPLG 2607
Query: 162 QPPCPLCCQSRAFSVPRPPTAFLYP 186
P L FSV P TA P
Sbjct: 2608 SPSKDLVSVEPVFSVVPPVTAVEIP 2632
>gi|7019335 hypothetical protein LOC745 isoform 1 [Homo sapiens]
Length = 1111
Score = 28.5 bits (62), Expect = 4.6
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 134 LPGLVTEPMLVCCREWLTSHQI-----TSELCGQPPCPLCCQSRAFSVPRPPTAFLYPGP 188
LPG+ +P L+ LTS T ++C PCP+ C S S PT GP
Sbjct: 813 LPGI--QPSLLLVTTSLTSSAPGSAVRTLDMCSSHPCPVICCS---SPTTNPTTGPSLGP 867
Query: 189 NHNP 192
+ NP
Sbjct: 868 SFNP 871
>gi|15826862 coiled-coil domain containing 120 isoform 3 [Homo
sapiens]
Length = 630
Score = 28.1 bits (61), Expect = 6.0
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 157 SELCGQ--PPCPLCCQSRAFSVPR-PPTAFLYPGPNHN 191
+EL GQ P CPL R V R PPTA YP P+ N
Sbjct: 61 AELTGQLPPECPLEPGERPQLVRRRPPTARAYPPPHPN 98
>gi|254039614 coiled-coil domain containing 120 isoform 4 [Homo
sapiens]
Length = 618
Score = 28.1 bits (61), Expect = 6.0
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 157 SELCGQ--PPCPLCCQSRAFSVPR-PPTAFLYPGPNHN 191
+EL GQ P CPL R V R PPTA YP P+ N
Sbjct: 49 AELTGQLPPECPLEPGERPQLVRRRPPTARAYPPPHPN 86
>gi|254039612 coiled-coil domain containing 120 isoform 2 [Homo
sapiens]
Length = 649
Score = 28.1 bits (61), Expect = 6.0
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 157 SELCGQ--PPCPLCCQSRAFSVPR-PPTAFLYPGPNHN 191
+EL GQ P CPL R V R PPTA YP P+ N
Sbjct: 49 AELTGQLPPECPLEPGERPQLVRRRPPTARAYPPPHPN 86
>gi|254039610 coiled-coil domain containing 120 isoform 1 [Homo
sapiens]
Length = 661
Score = 28.1 bits (61), Expect = 6.0
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 157 SELCGQ--PPCPLCCQSRAFSVPR-PPTAFLYPGPNHN 191
+EL GQ P CPL R V R PPTA YP P+ N
Sbjct: 61 AELTGQLPPECPLEPGERPQLVRRRPPTARAYPPPHPN 98
>gi|206725526 signal-induced proliferation-associated protein 1
[Homo sapiens]
Length = 1042
Score = 28.1 bits (61), Expect = 6.0
Identities = 23/78 (29%), Positives = 28/78 (35%), Gaps = 14/78 (17%)
Query: 10 KSDSKAFSPNPGQHTQPGRVAQDISTAQSP----TRHFTDVDLQVFCDLPRVMLVGSKAG 65
+S S A P P A A P TR FTD + L+G A
Sbjct: 52 RSGSDAGEARPPTPASPRARAHSHEEASRPAATSTRLFTDP----------LALLGLPAE 101
Query: 66 KTDSVPPAVFSPRWIRHY 83
+ + P V PRW HY
Sbjct: 102 EPEPAFPPVLEPRWFAHY 119
>gi|206725523 signal-induced proliferation-associated protein 1
[Homo sapiens]
Length = 1042
Score = 28.1 bits (61), Expect = 6.0
Identities = 23/78 (29%), Positives = 28/78 (35%), Gaps = 14/78 (17%)
Query: 10 KSDSKAFSPNPGQHTQPGRVAQDISTAQSP----TRHFTDVDLQVFCDLPRVMLVGSKAG 65
+S S A P P A A P TR FTD + L+G A
Sbjct: 52 RSGSDAGEARPPTPASPRARAHSHEEASRPAATSTRLFTDP----------LALLGLPAE 101
Query: 66 KTDSVPPAVFSPRWIRHY 83
+ + P V PRW HY
Sbjct: 102 EPEPAFPPVLEPRWFAHY 119
>gi|144953895 nidogen 2 precursor [Homo sapiens]
Length = 1375
Score = 28.1 bits (61), Expect = 6.0
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 8 QFKSDSKAFSPNPGQHTQPGRVAQDISTAQSPTRHFTDVDLQVF 51
+F + K P H G+V+ + +P HFTDVDL +
Sbjct: 515 KFYGNGKHCLPEGAPHRVNGKVSGHLHVGHTPV-HFTDVDLHAY 557
>gi|71274186 hypothetical protein LOC85449 [Homo sapiens]
Length = 1200
Score = 27.7 bits (60), Expect = 7.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 156 TSELCGQPPCPLCCQSRAFSVPRPPT 181
T E G+ P P+ C SR S P PPT
Sbjct: 443 TKERNGRLPKPMPCPSRNTSSPEPPT 468
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,294,938
Number of Sequences: 37866
Number of extensions: 597317
Number of successful extensions: 1298
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1288
Number of HSP's gapped (non-prelim): 34
length of query: 217
length of database: 18,247,518
effective HSP length: 98
effective length of query: 119
effective length of database: 14,536,650
effective search space: 1729861350
effective search space used: 1729861350
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.