Guide to the Human Genome
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Name: ATP5S Sequence: fasta or formatted (127aa) NCBI GI: 51558777
Description:

ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s isoform b precursor

Referenced in:

Oxidative Phosphorylation

Other entries for this name:
alt prot [136aa] ATP synthase, H+ transporting, mitochondrial F0 complex, subunit ...
alt prot [215aa] ATP synthase, H+ transporting, mitochondrial F0 complex, subunit ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3          8           2
 C cysteine            7.1          9           2
 D aspartate           8.7         11           1
 E glutamate           3.1          4           1
 F phenylalanine       3.1          4           1
 G glycine             6.3          8           1
 H histidine           2.4          3           1
 I isoleucine          5.5          7           1
 K lysine              5.5          7           2
 L leucine             6.3          8           2
 M methionine          4.7          6           2
 N asparagine          3.1          4           1
 P proline             3.9          5           1
 Q glutamine           5.5          7           2
 R arginine            6.3          8           1
 S serine              6.3          8           1
 T threonine           3.1          4           1
 V valine              4.7          6           1
 W tryptophan          3.9          5           1
 Y tyrosine            3.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP synthase, H+ transporting, mitochondrial F0 comp... 
ATP5S                 0.945   ATP synthase, H+ transporting, mitochondrial F0 comp...
ATP5S                 0.938   ATP synthase, H+ transporting, mitochondrial F0 comp...
TG                    0.020   thyroglobulin 
LOC100293184          0.020   PREDICTED: hypothetical protein 
LOC100290867          0.020   PREDICTED: hypothetical protein XP_002348071 
LOC100287479          0.020   PREDICTED: hypothetical protein XP_002343753 
LOC100292390          0.008   PREDICTED: hypothetical protein 
LOC100291400          0.008   PREDICTED: hypothetical protein XP_002348330 
LOC100288057          0.008   PREDICTED: hypothetical protein XP_002342282 
IGLON5                0.008   IgLON family member 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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