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Search of human proteins with 239757041
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757041 PREDICTED: hypothetical protein LOC100128893 [Homo
sapiens]
(82 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757041 PREDICTED: hypothetical protein LOC100128893 [Homo ... 169 3e-43
gi|239751524 PREDICTED: hypothetical protein LOC100128893 [Homo ... 169 3e-43
gi|239746035 PREDICTED: hypothetical protein LOC100128893 [Homo ... 169 3e-43
gi|170784817 transcription factor CP2-like 3 [Homo sapiens] 30 0.32
gi|239753180 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|239747754 PREDICTED: hypothetical protein XP_002348260 [Homo ... 28 2.1
gi|239741620 PREDICTED: hypothetical protein XP_002342250 [Homo ... 28 2.1
gi|18702331 OTU domain containing 7A [Homo sapiens] 27 2.7
gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo ... 27 3.5
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 27 3.5
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 27 3.5
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 27 3.5
gi|4507741 twist [Homo sapiens] 27 4.6
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|212274327 transmembrane protein 151B [Homo sapiens] 27 4.6
gi|50980301 myosin phosphatase-Rho interacting protein isoform 2... 26 6.0
gi|50980307 myosin phosphatase-Rho interacting protein isoform 1... 26 6.0
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 26 7.8
gi|169209545 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|169210556 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|169210041 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|56606125 hypothetical protein LOC201725 [Homo sapiens] 26 7.8
>gi|239757041 PREDICTED: hypothetical protein LOC100128893 [Homo
sapiens]
Length = 82
Score = 169 bits (429), Expect = 3e-43
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MSAWISLDTRYPPGTCFSRSSADAAGGRAGPGAAGTEVSSGVDIDRFDNVRALRAREGTR 60
MSAWISLDTRYPPGTCFSRSSADAAGGRAGPGAAGTEVSSGVDIDRFDNVRALRAREGTR
Sbjct: 1 MSAWISLDTRYPPGTCFSRSSADAAGGRAGPGAAGTEVSSGVDIDRFDNVRALRAREGTR 60
Query: 61 HFTLQIPNLFLKIMFKTYGKNK 82
HFTLQIPNLFLKIMFKTYGKNK
Sbjct: 61 HFTLQIPNLFLKIMFKTYGKNK 82
>gi|239751524 PREDICTED: hypothetical protein LOC100128893 [Homo
sapiens]
Length = 82
Score = 169 bits (429), Expect = 3e-43
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MSAWISLDTRYPPGTCFSRSSADAAGGRAGPGAAGTEVSSGVDIDRFDNVRALRAREGTR 60
MSAWISLDTRYPPGTCFSRSSADAAGGRAGPGAAGTEVSSGVDIDRFDNVRALRAREGTR
Sbjct: 1 MSAWISLDTRYPPGTCFSRSSADAAGGRAGPGAAGTEVSSGVDIDRFDNVRALRAREGTR 60
Query: 61 HFTLQIPNLFLKIMFKTYGKNK 82
HFTLQIPNLFLKIMFKTYGKNK
Sbjct: 61 HFTLQIPNLFLKIMFKTYGKNK 82
>gi|239746035 PREDICTED: hypothetical protein LOC100128893 [Homo
sapiens]
Length = 82
Score = 169 bits (429), Expect = 3e-43
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MSAWISLDTRYPPGTCFSRSSADAAGGRAGPGAAGTEVSSGVDIDRFDNVRALRAREGTR 60
MSAWISLDTRYPPGTCFSRSSADAAGGRAGPGAAGTEVSSGVDIDRFDNVRALRAREGTR
Sbjct: 1 MSAWISLDTRYPPGTCFSRSSADAAGGRAGPGAAGTEVSSGVDIDRFDNVRALRAREGTR 60
Query: 61 HFTLQIPNLFLKIMFKTYGKNK 82
HFTLQIPNLFLKIMFKTYGKNK
Sbjct: 61 HFTLQIPNLFLKIMFKTYGKNK 82
>gi|170784817 transcription factor CP2-like 3 [Homo sapiens]
Length = 625
Score = 30.4 bits (67), Expect = 0.32
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 2 SAWISLDTRYPPGTCFSRSSADAAGGRAGPGAAGTE------VSSGVDIDRFDNVRALRA 55
SA++ D R P + +S S DAA + + G E SSG + ++LR
Sbjct: 201 SAYLKDDQRSTPDSTYSESFKDAATEKFRSASVGAEEYMYDQTSSGTFQYTLEATKSLRQ 260
Query: 56 REGTRHFTLQIPNLFLKIMFKTYGKNK 82
++G T F I G NK
Sbjct: 261 KQGEGPMTYLNKGQFYAITLSETGDNK 287
>gi|239753180 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 1 MSAWISLDTRYPPGTCFSRSS 21
+ W+ DT PGTCF SS
Sbjct: 46 LPGWVCSDTHISPGTCFPASS 66
>gi|239747754 PREDICTED: hypothetical protein XP_002348260 [Homo
sapiens]
Length = 130
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 1 MSAWISLDTRYPPGTCFSRSS 21
+ W+ DT PGTCF SS
Sbjct: 46 LPGWVCSDTHISPGTCFPASS 66
>gi|239741620 PREDICTED: hypothetical protein XP_002342250 [Homo
sapiens]
Length = 130
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 1 MSAWISLDTRYPPGTCFSRSS 21
+ W+ DT PGTCF SS
Sbjct: 46 LPGWVCSDTHISPGTCFPASS 66
>gi|18702331 OTU domain containing 7A [Homo sapiens]
Length = 926
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 5 ISLDTRYPPGTCFSRSSADAAGGRAGPGAAGTEVSS 40
+ L R PG R++ AAGG A PG S+
Sbjct: 719 LKLKERPSPGPAAGRAARAAAGGTASPGGGARRASA 754
>gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo
sapiens]
Length = 538
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 18 SRSSADAAG-GRAGPGAAGTEVSSGVDIDRFDNVRALRA 55
+R + AAG GR+GPG+A + SG D R RA RA
Sbjct: 113 ARPAGMAAGTGRSGPGSARLGLGSGWDPARAVAPRAARA 151
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 12 PPGTCFSRSSADAAGGRAGPGAAGTEVSSGVDIDRFDNVRALRAREGTR 60
PPG R A A G R PG G + G FD + L +G R
Sbjct: 444 PPGKAGRRGRAGADGARGMPGDPGVKGDRG-----FDGLPGLPGEKGHR 487
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 12 PPGTCFSRSSADAAGGRAGPGAAGTEVSSGVDIDRFDNVRALRAREGTR 60
PPG R A A G R PG G + G FD + L +G R
Sbjct: 423 PPGKAGRRGRAGADGARGMPGDPGVKGDRG-----FDGLPGLPGEKGHR 466
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 12 PPGTCFSRSSADAAGGRAGPGAAGTEVSSGVDIDRFDNVRALRAREGTR 60
PPG R A A G R PG G + G FD + L +G R
Sbjct: 530 PPGKAGRRGRAGADGARGMPGDPGVKGDRG-----FDGLPGLPGEKGHR 573
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 8 DTRYPP----GTCFSRSSADAAGGRAGP-GAAGTEVSSG 41
D + PP G RSS +AGG AGP GAAG V G
Sbjct: 25 DRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVGGG 63
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 10 RYPPGTCFSRSSADAAGGRAGPGAA 34
R PG+C +R + AAGG GP A
Sbjct: 63 RTHPGSCRARCPSPAAGGLRGPWTA 87
>gi|212274327 transmembrane protein 151B [Homo sapiens]
Length = 566
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 12 PPGTCFSRSSADAAGGRAGPGAA 34
PPG+ S+A GG GPG +
Sbjct: 3 PPGSAAGESAAGGGGGGGGPGVS 25
>gi|50980301 myosin phosphatase-Rho interacting protein isoform 2
[Homo sapiens]
Length = 1025
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 13 PGTCFSRSSADAAGGRAGPGAAGTEVSSGVDIDRFDNVRALRAREGTRHFTLQ 65
P S+S AA PG E S + DR D R +R G +F+L+
Sbjct: 221 PAQSPSQSQPPAASSLREPGLESKEEESAMSSDRMDCGRKVRVESG--YFSLE 271
>gi|50980307 myosin phosphatase-Rho interacting protein isoform 1
[Homo sapiens]
Length = 1038
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 13 PGTCFSRSSADAAGGRAGPGAAGTEVSSGVDIDRFDNVRALRAREGTRHFTLQ 65
P S+S AA PG E S + DR D R +R G +F+L+
Sbjct: 221 PAQSPSQSQPPAASSLREPGLESKEEESAMSSDRMDCGRKVRVESG--YFSLE 271
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 5 ISLDTRYPPGTCFSRSSADAAGG------RAGPGAAGTEVSSGVDID 45
ISL R PG C S SA A R G GTE +D +
Sbjct: 7103 ISLPGRPKPGPCSSPGSASQASSSQVSSLRVGSSQVGTEPGPSLDAE 7149
>gi|169209545 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 8/29 (27%)
Query: 2 SAWISLDTRYPPGTCFSRSSADAAGGRAG 30
SAW+ GTCF S AAGG AG
Sbjct: 99 SAWV--------GTCFPLSLLQAAGGPAG 119
>gi|169210556 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 8/29 (27%)
Query: 2 SAWISLDTRYPPGTCFSRSSADAAGGRAG 30
SAW+ GTCF S AAGG AG
Sbjct: 99 SAWV--------GTCFPLSLLQAAGGPAG 119
>gi|169210041 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 8/29 (27%)
Query: 2 SAWISLDTRYPPGTCFSRSSADAAGGRAG 30
SAW+ GTCF S AAGG AG
Sbjct: 99 SAWV--------GTCFPLSLLQAAGGPAG 119
>gi|56606125 hypothetical protein LOC201725 [Homo sapiens]
Length = 113
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 12 PPGTCFSRSSADAAGGRAGPGAAGTEV---SSGVDIDRFDNV 50
PP + S S A AA GP + G V SSG +D+ + V
Sbjct: 15 PPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEV 56
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,368,832
Number of Sequences: 37866
Number of extensions: 119474
Number of successful extensions: 776
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 36
length of query: 82
length of database: 18,247,518
effective HSP length: 54
effective length of query: 28
effective length of database: 16,202,754
effective search space: 453677112
effective search space used: 453677112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.