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Search of human proteins with 239757014
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757014 PREDICTED: hypothetical protein [Homo sapiens]
(281 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757014 PREDICTED: hypothetical protein [Homo sapiens] 582 e-166
gi|239747122 PREDICTED: hypothetical protein XP_002343916 [Homo ... 528 e-150
gi|239746558 PREDICTED: hypothetical protein XP_002343788 [Homo ... 528 e-150
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 37 0.015
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 37 0.015
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 37 0.015
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 37 0.015
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 37 0.015
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 37 0.015
gi|239756899 PREDICTED: hypothetical protein [Homo sapiens] 37 0.019
gi|113427491 PREDICTED: hypothetical protein [Homo sapiens] 37 0.019
gi|239745902 PREDICTED: hypothetical protein [Homo sapiens] 37 0.019
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 37 0.019
gi|239750652 PREDICTED: hypothetical protein XP_002347499 [Homo ... 36 0.043
gi|239744960 PREDICTED: hypothetical protein XP_002343317 [Homo ... 36 0.043
gi|87298836 NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho... 35 0.096
gi|23200002 NOL1/NOP2/Sun domain family, member 5C isoform 2 [Ho... 35 0.096
gi|23200000 NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho... 35 0.096
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 34 0.16
gi|239756120 PREDICTED: hypothetical protein [Homo sapiens] 34 0.16
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 34 0.16
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ... 34 0.16
gi|28557777 immunoglobulin-like domain containing receptor 1 [Ho... 33 0.21
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 33 0.21
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 33 0.36
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 32 0.48
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 32 0.48
gi|239757158 PREDICTED: hypothetical protein [Homo sapiens] 32 0.62
gi|169167813 PREDICTED: hypothetical protein [Homo sapiens] 32 0.62
gi|239751647 PREDICTED: hypothetical protein XP_002347957 [Homo ... 32 0.62
>gi|239757014 PREDICTED: hypothetical protein [Homo sapiens]
Length = 281
Score = 582 bits (1500), Expect = e-166
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MLSATIQSSPCIRSSDGGSQQGWMPESHRLLLHGTCGQKNGYHLDHGVSRSRAALPGEER 60
MLSATIQSSPCIRSSDGGSQQGWMPESHRLLLHGTCGQKNGYHLDHGVSRSRAALPGEER
Sbjct: 1 MLSATIQSSPCIRSSDGGSQQGWMPESHRLLLHGTCGQKNGYHLDHGVSRSRAALPGEER 60
Query: 61 APRKYLLGNNTPVSVLGRTSHYLRPQKCKHPPVFQCAVNPGIRAVPAMDTALLPPLVFFA 120
APRKYLLGNNTPVSVLGRTSHYLRPQKCKHPPVFQCAVNPGIRAVPAMDTALLPPLVFFA
Sbjct: 61 APRKYLLGNNTPVSVLGRTSHYLRPQKCKHPPVFQCAVNPGIRAVPAMDTALLPPLVFFA 120
Query: 121 SLSPAAGIRLGCSPSHLLGRDHLSRPRPRPTRGDPPPSPDTGFSARACERVPARRPARRR 180
SLSPAAGIRLGCSPSHLLGRDHLSRPRPRPTRGDPPPSPDTGFSARACERVPARRPARRR
Sbjct: 121 SLSPAAGIRLGCSPSHLLGRDHLSRPRPRPTRGDPPPSPDTGFSARACERVPARRPARRR 180
Query: 181 ERALCGRCCSVVVAVRRRRRRRSSSRTRLPSSSGAALRRPWQGAWEVSVRPSLPAVSVRV 240
ERALCGRCCSVVVAVRRRRRRRSSSRTRLPSSSGAALRRPWQGAWEVSVRPSLPAVSVRV
Sbjct: 181 ERALCGRCCSVVVAVRRRRRRRSSSRTRLPSSSGAALRRPWQGAWEVSVRPSLPAVSVRV 240
Query: 241 HRCRRLEVGGHGSPGANGADMGLVERRSDRLSVQQDIFLTW 281
HRCRRLEVGGHGSPGANGADMGLVERRSDRLSVQQDIFLTW
Sbjct: 241 HRCRRLEVGGHGSPGANGADMGLVERRSDRLSVQQDIFLTW 281
>gi|239747122 PREDICTED: hypothetical protein XP_002343916 [Homo
sapiens]
Length = 598
Score = 528 bits (1360), Expect = e-150
Identities = 258/280 (92%), Positives = 262/280 (93%)
Query: 2 LSATIQSSPCIRSSDGGSQQGWMPESHRLLLHGTCGQKNGYHLDHGVSRSRAALPGEERA 61
L+AT ++ + GG G LLLHGTCGQKNGYHLDHGVSRSRAALPGEERA
Sbjct: 319 LAATTEAYLLVPQPTGGHTPGLWALPRTLLLHGTCGQKNGYHLDHGVSRSRAALPGEERA 378
Query: 62 PRKYLLGNNTPVSVLGRTSHYLRPQKCKHPPVFQCAVNPGIRAVPAMDTALLPPLVFFAS 121
PRKYLLGNNTPVSVLGRTSHYLRPQKCKHPPVFQCAVNPGIRAVPAMDTALLPPLVFFAS
Sbjct: 379 PRKYLLGNNTPVSVLGRTSHYLRPQKCKHPPVFQCAVNPGIRAVPAMDTALLPPLVFFAS 438
Query: 122 LSPAAGIRLGCSPSHLLGRDHLSRPRPRPTRGDPPPSPDTGFSARACERVPARRPARRRE 181
LSPAAGIRLGCSPSHLLGRDHLSRPRPRPTRGDPPPSPDTGFSARACERVPARRPARRRE
Sbjct: 439 LSPAAGIRLGCSPSHLLGRDHLSRPRPRPTRGDPPPSPDTGFSARACERVPARRPARRRE 498
Query: 182 RALCGRCCSVVVAVRRRRRRRSSSRTRLPSSSGAALRRPWQGAWEVSVRPSLPAVSVRVH 241
RALCGRCCSVVVAVRRRRRRRSSSRTRLPSSSGAALRRPWQGAWEVSVRPSLPAVSVRVH
Sbjct: 499 RALCGRCCSVVVAVRRRRRRRSSSRTRLPSSSGAALRRPWQGAWEVSVRPSLPAVSVRVH 558
Query: 242 RCRRLEVGGHGSPGANGADMGLVERRSDRLSVQQDIFLTW 281
RCRRLEVGGHGSPGANGADMGLVERRSDRLSVQQDIFLTW
Sbjct: 559 RCRRLEVGGHGSPGANGADMGLVERRSDRLSVQQDIFLTW 598
>gi|239746558 PREDICTED: hypothetical protein XP_002343788 [Homo
sapiens]
Length = 616
Score = 528 bits (1360), Expect = e-150
Identities = 258/280 (92%), Positives = 262/280 (93%)
Query: 2 LSATIQSSPCIRSSDGGSQQGWMPESHRLLLHGTCGQKNGYHLDHGVSRSRAALPGEERA 61
L+AT ++ + GG G LLLHGTCGQKNGYHLDHGVSRSRAALPGEERA
Sbjct: 337 LAATTEAYLLVPQPTGGHTPGLWALPRTLLLHGTCGQKNGYHLDHGVSRSRAALPGEERA 396
Query: 62 PRKYLLGNNTPVSVLGRTSHYLRPQKCKHPPVFQCAVNPGIRAVPAMDTALLPPLVFFAS 121
PRKYLLGNNTPVSVLGRTSHYLRPQKCKHPPVFQCAVNPGIRAVPAMDTALLPPLVFFAS
Sbjct: 397 PRKYLLGNNTPVSVLGRTSHYLRPQKCKHPPVFQCAVNPGIRAVPAMDTALLPPLVFFAS 456
Query: 122 LSPAAGIRLGCSPSHLLGRDHLSRPRPRPTRGDPPPSPDTGFSARACERVPARRPARRRE 181
LSPAAGIRLGCSPSHLLGRDHLSRPRPRPTRGDPPPSPDTGFSARACERVPARRPARRRE
Sbjct: 457 LSPAAGIRLGCSPSHLLGRDHLSRPRPRPTRGDPPPSPDTGFSARACERVPARRPARRRE 516
Query: 182 RALCGRCCSVVVAVRRRRRRRSSSRTRLPSSSGAALRRPWQGAWEVSVRPSLPAVSVRVH 241
RALCGRCCSVVVAVRRRRRRRSSSRTRLPSSSGAALRRPWQGAWEVSVRPSLPAVSVRVH
Sbjct: 517 RALCGRCCSVVVAVRRRRRRRSSSRTRLPSSSGAALRRPWQGAWEVSVRPSLPAVSVRVH 576
Query: 242 RCRRLEVGGHGSPGANGADMGLVERRSDRLSVQQDIFLTW 281
RCRRLEVGGHGSPGANGADMGLVERRSDRLSVQQDIFLTW
Sbjct: 577 RCRRLEVGGHGSPGANGADMGLVERRSDRLSVQQDIFLTW 616
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 37.4 bits (85), Expect = 0.015
Identities = 37/135 (27%), Positives = 49/135 (36%), Gaps = 19/135 (14%)
Query: 90 HPPVFQCAVNPGIRAVPAMDTALLPPLVFFASLSPAA----GIRLGCSPSH------LLG 139
HPP + AV+ +RA PA LLP ++ A A +R + +H G
Sbjct: 58 HPPSSRAAVHSRLRAAPAAAPRLLPRVLAGAPARTGALAGSRLRAAAAAAHDQEAAAPTG 117
Query: 140 RDHLSRPRPRPTRGDPPPSPDTGFSARACERVPARRPARRRERALCGRCCSVVVAVRRRR 199
R RP P P P T + E P R P R RA C R
Sbjct: 118 RRWRRRPGPSPPLQPRSRHPHTRYPRAVPEATPLRPPPGTRPRAKSRPGC---------R 168
Query: 200 RRRSSSRTRLPSSSG 214
+R+R P +G
Sbjct: 169 SSPFPARSRTPGEAG 183
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.4 bits (85), Expect = 0.015
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 74 SVLGRTSHYLRPQKCKHPPVFQCAVNPGIRAVPAMDTALLPPLVFFASLSPAAGIRLGCS 133
S+ G + Y + PPV + PGI A P + PP+ L PA G +G
Sbjct: 160 SIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPP---PGMRPPMGPPIGLPPARGTPIGMP 216
Query: 134 PSHLLGRDHLSRPRPRPTRGDPPP 157
P + RP P RG PPP
Sbjct: 217 PPGM-------RPPPPGIRGPPPP 233
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.4 bits (85), Expect = 0.015
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 74 SVLGRTSHYLRPQKCKHPPVFQCAVNPGIRAVPAMDTALLPPLVFFASLSPAAGIRLGCS 133
S+ G + Y + PPV + PGI A P + PP+ L PA G +G
Sbjct: 160 SIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPP---PGMRPPMGPPIGLPPARGTPIGMP 216
Query: 134 PSHLLGRDHLSRPRPRPTRGDPPP 157
P + RP P RG PPP
Sbjct: 217 PPGM-------RPPPPGIRGPPPP 233
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.4 bits (85), Expect = 0.015
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 74 SVLGRTSHYLRPQKCKHPPVFQCAVNPGIRAVPAMDTALLPPLVFFASLSPAAGIRLGCS 133
S+ G + Y + PPV + PGI A P + PP+ L PA G +G
Sbjct: 160 SIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPP---PGMRPPMGPPIGLPPARGTPIGMP 216
Query: 134 PSHLLGRDHLSRPRPRPTRGDPPP 157
P + RP P RG PPP
Sbjct: 217 PPGM-------RPPPPGIRGPPPP 233
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.4 bits (85), Expect = 0.015
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 74 SVLGRTSHYLRPQKCKHPPVFQCAVNPGIRAVPAMDTALLPPLVFFASLSPAAGIRLGCS 133
S+ G + Y + PPV + PGI A P + PP+ L PA G +G
Sbjct: 160 SIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPP---PGMRPPMGPPIGLPPARGTPIGMP 216
Query: 134 PSHLLGRDHLSRPRPRPTRGDPPP 157
P + RP P RG PPP
Sbjct: 217 PPGM-------RPPPPGIRGPPPP 233
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.4 bits (85), Expect = 0.015
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 74 SVLGRTSHYLRPQKCKHPPVFQCAVNPGIRAVPAMDTALLPPLVFFASLSPAAGIRLGCS 133
S+ G + Y + PPV + PGI A P + PP+ L PA G +G
Sbjct: 160 SIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPP---PGMRPPMGPPIGLPPARGTPIGMP 216
Query: 134 PSHLLGRDHLSRPRPRPTRGDPPP 157
P + RP P RG PPP
Sbjct: 217 PPGM-------RPPPPGIRGPPPP 233
>gi|239756899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 37.0 bits (84), Expect = 0.019
Identities = 41/128 (32%), Positives = 48/128 (37%), Gaps = 26/128 (20%)
Query: 146 PRPRPTRGDP-----PPSPDTGFSARACERVPARRPARRRERALCGRCCSVVVAVRRRRR 200
P P RGDP PP+P+ AR + A R R R L G R
Sbjct: 55 PAGEPRRGDPGVAPSPPAPEDS-DARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGA 113
Query: 201 RRSSSRTRLPSSSGAALRRPWQGAWEVSVRPSLPAVSV---RVHRC-----------RRL 246
+ + LP S+ RRP A +RP PA V RV C RRL
Sbjct: 114 QTREGKMGLPDSA----RRP--RAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRL 167
Query: 247 EVGGHGSP 254
V G GSP
Sbjct: 168 RVSGRGSP 175
>gi|113427491 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 37.0 bits (84), Expect = 0.019
Identities = 41/128 (32%), Positives = 48/128 (37%), Gaps = 26/128 (20%)
Query: 146 PRPRPTRGDP-----PPSPDTGFSARACERVPARRPARRRERALCGRCCSVVVAVRRRRR 200
P P RGDP PP+P+ AR + A R R R L G R
Sbjct: 55 PAGEPRRGDPGVAPSPPAPEDS-DARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGA 113
Query: 201 RRSSSRTRLPSSSGAALRRPWQGAWEVSVRPSLPAVSV---RVHRC-----------RRL 246
+ + LP S+ RRP A +RP PA V RV C RRL
Sbjct: 114 QTREGKMGLPDSA----RRP--RAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRL 167
Query: 247 EVGGHGSP 254
V G GSP
Sbjct: 168 RVSGRGSP 175
>gi|239745902 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 37.0 bits (84), Expect = 0.019
Identities = 41/128 (32%), Positives = 48/128 (37%), Gaps = 26/128 (20%)
Query: 146 PRPRPTRGDP-----PPSPDTGFSARACERVPARRPARRRERALCGRCCSVVVAVRRRRR 200
P P RGDP PP+P+ AR + A R R R L G R
Sbjct: 55 PAGEPRRGDPGVAPSPPAPEDS-DARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGA 113
Query: 201 RRSSSRTRLPSSSGAALRRPWQGAWEVSVRPSLPAVSV---RVHRC-----------RRL 246
+ + LP S+ RRP A +RP PA V RV C RRL
Sbjct: 114 QTREGKMGLPDSA----RRP--RAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRL 167
Query: 247 EVGGHGSP 254
V G GSP
Sbjct: 168 RVSGRGSP 175
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 37.0 bits (84), Expect = 0.019
Identities = 57/209 (27%), Positives = 73/209 (34%), Gaps = 50/209 (23%)
Query: 71 TPVSVLGRTSHYLRPQKCKHPPVFQCA-VNPGIRAVPAMDTALLPPLVFFASLSPAAGIR 129
TP S +TS +P K PPV Q A PG A P P R
Sbjct: 1871 TPSSSSSQTSPASQPLPRKRPPVTQAAGALPGPGASPV----------------PKTPAR 1914
Query: 130 LGCSPSHLLGRDHLSRP-RPRPTRGDPPP----SPDTGFSARA-CERVPARRPAR----- 178
+ H R + P RP R PPP P+ G RA E P R R
Sbjct: 1915 TLLAKQHKTQRSPVRIPFMQRPARRGPPPLARAVPEPGPRGRAGTEAGPGARGGRLGLVR 1974
Query: 179 ----------RRERALCGRCCSVV---VAVRRRRRRRSSSRTRLPSSSGAALRRPWQGAW 225
+R+ R + + +RRRR SS+ + + GA+ RR
Sbjct: 1975 VASALSSGSESSDRSGFRRQLTFIKESPGLRRRRSELSSAESAASAPQGASPRRG----- 2029
Query: 226 EVSVRPSLPAVSVRVHRCRRLEVGGHGSP 254
RP+LPAV + RC L P
Sbjct: 2030 ----RPALPAVFLCSSRCEELRAAPRQGP 2054
>gi|239750652 PREDICTED: hypothetical protein XP_002347499 [Homo
sapiens]
Length = 166
Score = 35.8 bits (81), Expect = 0.043
Identities = 37/121 (30%), Positives = 44/121 (36%), Gaps = 20/121 (16%)
Query: 150 PTRGDPP--PSPDTGFSARACERVPARRPARRRERALCGRCCSVVVAVRRRRRRRSSSRT 207
P PP P+ G SA P + A + R RCCSVV A R RSS+R
Sbjct: 20 PAESAPPLQSHPENGVSA------PGKGTAAKGARGGQSRCCSVVAARLLRLTPRSSARR 73
Query: 208 RLPSSSGAALRRPWQGAWEVSVRPSLPAVSVRVHRCRRLEVGGHGSPGANGADMGLVERR 267
P S A QG LPA+S R G GA + G R
Sbjct: 74 GRPESEPATNGTRQQG--------DLPALSAAAEAPRE----GGKEEGAGAREAGAARGR 121
Query: 268 S 268
+
Sbjct: 122 A 122
>gi|239744960 PREDICTED: hypothetical protein XP_002343317 [Homo
sapiens]
Length = 166
Score = 35.8 bits (81), Expect = 0.043
Identities = 37/121 (30%), Positives = 44/121 (36%), Gaps = 20/121 (16%)
Query: 150 PTRGDPP--PSPDTGFSARACERVPARRPARRRERALCGRCCSVVVAVRRRRRRRSSSRT 207
P PP P+ G SA P + A + R RCCSVV A R RSS+R
Sbjct: 20 PAESAPPLQSHPENGVSA------PGKGTAAKGARGGQSRCCSVVAARLLRLTPRSSARR 73
Query: 208 RLPSSSGAALRRPWQGAWEVSVRPSLPAVSVRVHRCRRLEVGGHGSPGANGADMGLVERR 267
P S A QG LPA+S R G GA + G R
Sbjct: 74 GRPESEPATNGTRQQG--------DLPALSAAAEAPRE----GGKEEGAGAREAGAARGR 121
Query: 268 S 268
+
Sbjct: 122 A 122
>gi|87298836 NOL1/NOP2/Sun domain family, member 5C isoform 1 [Homo
sapiens]
Length = 315
Score = 34.7 bits (78), Expect = 0.096
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 18/112 (16%)
Query: 122 LSPAAGIRLGCSPSHLLGRDHLSRPRPRPT-----------RGDPPPSPDTGFSARACER 170
L+PA R S G +H R P+ T R + P S A A ER
Sbjct: 199 LAPALPARPHRGLSTFPGAEHCLRASPKTTLSGGFFVAVIERVEMPTSASQA-KASAPER 257
Query: 171 VPARRPARRRERALCGRCCSVVVAVRRRRRRRSSSRTRLPSSSGAALRRPWQ 222
P+ P R++ C RC + + + + LP G L PW+
Sbjct: 258 TPSPAPKRKKRAKSCSRCLHTALHI------AEAPGSLLPGGKGRCLSSPWK 303
>gi|23200002 NOL1/NOP2/Sun domain family, member 5C isoform 2 [Homo
sapiens]
Length = 291
Score = 34.7 bits (78), Expect = 0.096
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 18/112 (16%)
Query: 122 LSPAAGIRLGCSPSHLLGRDHLSRPRPRPT-----------RGDPPPSPDTGFSARACER 170
L+PA R S G +H R P+ T R + P S A A ER
Sbjct: 175 LAPALPARPHRGLSTFPGAEHCLRASPKTTLSGGFFVAVIERVEMPTSASQA-KASAPER 233
Query: 171 VPARRPARRRERALCGRCCSVVVAVRRRRRRRSSSRTRLPSSSGAALRRPWQ 222
P+ P R++ C RC + + + + LP G L PW+
Sbjct: 234 TPSPAPKRKKRAKSCSRCLHTALHI------AEAPGSLLPGGKGRCLSSPWK 279
>gi|23200000 NOL1/NOP2/Sun domain family, member 5C isoform 1 [Homo
sapiens]
Length = 315
Score = 34.7 bits (78), Expect = 0.096
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 18/112 (16%)
Query: 122 LSPAAGIRLGCSPSHLLGRDHLSRPRPRPT-----------RGDPPPSPDTGFSARACER 170
L+PA R S G +H R P+ T R + P S A A ER
Sbjct: 199 LAPALPARPHRGLSTFPGAEHCLRASPKTTLSGGFFVAVIERVEMPTSASQA-KASAPER 257
Query: 171 VPARRPARRRERALCGRCCSVVVAVRRRRRRRSSSRTRLPSSSGAALRRPWQ 222
P+ P R++ C RC + + + + LP G L PW+
Sbjct: 258 TPSPAPKRKKRAKSCSRCLHTALHI------AEAPGSLLPGGKGRCLSSPWK 303
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 33.9 bits (76), Expect = 0.16
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 22/81 (27%)
Query: 143 LSRPRPRPTRGDPPPSPDTGFSARACERVP---------ARRPARRRERALCGRCCSVVV 193
LS PRP PPP P R+ R P +R +RRR R+L
Sbjct: 6 LSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSL--------- 56
Query: 194 AVRRRRRRRSSSRTRLPSSSG 214
R RRRS SR+R P SSG
Sbjct: 57 ---RWLRRRSRSRSR-PFSSG 73
>gi|239756120 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 33.9 bits (76), Expect = 0.16
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 150 PTRGDPP--PSPDTGFSARACERVPARRPARRRERALCGRCCSVVVAVRRRRRRRSSSRT 207
P PP P+ G SA P + A + R RCCSVV A R RSS+R
Sbjct: 20 PAESAPPLQSHPENGVSA------PGKGTAAKGARGGQSRCCSVVAARLLRLTPRSSARR 73
Query: 208 RLPSSSGAALRRPWQGAWEVSVRPSLPAVS 237
P S A QG LPA+S
Sbjct: 74 GRPESEPATNGTRQQG--------DLPALS 95
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 33.9 bits (76), Expect = 0.16
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 22/81 (27%)
Query: 143 LSRPRPRPTRGDPPPSPDTGFSARACERVP---------ARRPARRRERALCGRCCSVVV 193
LS PRP PPP P R+ R P +R +RRR R+L
Sbjct: 6 LSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSL--------- 56
Query: 194 AVRRRRRRRSSSRTRLPSSSG 214
R RRRS SR+R P SSG
Sbjct: 57 ---RWLRRRSRSRSR-PFSSG 73
>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
Length = 231
Score = 33.9 bits (76), Expect = 0.16
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 22/81 (27%)
Query: 143 LSRPRPRPTRGDPPPSPDTGFSARACERVP---------ARRPARRRERALCGRCCSVVV 193
LS PRP PPP P R+ R P +R +RRR R+L
Sbjct: 6 LSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSL--------- 56
Query: 194 AVRRRRRRRSSSRTRLPSSSG 214
R RRRS SR+R P SSG
Sbjct: 57 ---RWLRRRSRSRSR-PFSSG 73
>gi|28557777 immunoglobulin-like domain containing receptor 1 [Homo
sapiens]
Length = 502
Score = 33.5 bits (75), Expect = 0.21
Identities = 47/151 (31%), Positives = 56/151 (37%), Gaps = 31/151 (20%)
Query: 129 RLGCSPSHLLGRDHLSR-PRPRPTRGDPPPSPDTGFSARACERVPARRPARRRERALCGR 187
RL SP H RD LS P R P P F +R ER RRP+ R GR
Sbjct: 363 RLNGSPIHWSDRDSLSDVPSSSEARWRPSHPP---FRSRCQER--PRRPSPRESTQRHGR 417
Query: 188 CCSVVVAVRRRRRRRSSSRTRLPS------SSGAALRRP--WQGAWEVSVRPSLPAVSVR 239
RRR S LPS S R+P W+ S P P
Sbjct: 418 -----------RRRHRSYSPPLPSGLSSWSSEEDKERQPQSWRAHRRGSHSPHWPEEKPP 466
Query: 240 VHRCRRLEVGGHGSPGANGADMGLVERRSDR 270
+R + +PG N G VERRS++
Sbjct: 467 SYRSLDI------TPGKNSRKKGSVERRSEK 491
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 33.5 bits (75), Expect = 0.21
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 141 DHLSRPRPRPTRGDPPPSPDTGFSARACERVPARRPARRRERALCGRCCSVVVAVRRRRR 200
D L P+P P PSP+ S + E+ R +R R ++ R RRR
Sbjct: 243 DILKVPKPEPIPEPKEPSPEKN-SKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRR 301
Query: 201 RRSSSRTRLPSSSGAALRRP 220
RS SR+ P + RRP
Sbjct: 302 HRSRSRSYSPRRRPSPRRRP 321
Score = 29.6 bits (65), Expect = 3.1
Identities = 30/89 (33%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 133 SPSHLLGRD-HLSRPRPRPTRGDPPPSPDTGFSARACERVPARRPARRRERALCGRCCSV 191
SPSH R H SR R R P P R R P RR R+
Sbjct: 292 SPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRS-------- 343
Query: 192 VVAVRRRRRRRSSSRTRLPSSSGAALRRP 220
VRRRRR +S SSS + R P
Sbjct: 344 --PVRRRRRSSASLSGSSSSSSSSRSRSP 370
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 32.7 bits (73), Expect = 0.36
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 146 PRPRPTRGDPPPS--PDTGFSARACE---RVPARR-PARRRERALCGRCCSVVVAVRRRR 199
P PRP PP+ PD FS A R P RR P+ RR L + R
Sbjct: 33 PTPRPLLPTRPPASPPDKAFSTHAFSENPRPPPRRDPSTRRPPVLAKGDDPL---PPRAA 89
Query: 200 RRRSSSRTRLPSSSGAALRRPWQGAWEVSVRPSLPAVSV 238
R S +R P G++ RR W V++RP + + +
Sbjct: 90 RPVSQARCPTPVGDGSSSRRCWDNG-RVNLRPVVQLIDI 127
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 32.3 bits (72), Expect = 0.48
Identities = 47/152 (30%), Positives = 62/152 (40%), Gaps = 32/152 (21%)
Query: 148 PRPTRGDPP---PSPDTGFSARACERVPARRPARRRERALCGRCCSVVVA---VRRRRRR 201
P P R PP S D + R P + P + R L GR +VV VRRRR++
Sbjct: 2714 PSPAR--PPRRRTSADVEIRGQGTGR-PGQPPGPKVLRKLPGRLVTVVEEKELVRRRRQQ 2770
Query: 202 RSSSRTRLP---------------SSSGAALRRPWQGAWEVSVRPSLPAVSVRVHRCRR- 245
R ++ T +P S SG P G E + SLP + RR
Sbjct: 2771 RGAASTLVPGVSETSASPGSPSVRSMSGPESSPPIGGPCEAAPSSSLPTPPQQPFIARRH 2830
Query: 246 --LEVGGHGSP-GANGADMGL----VERRSDR 270
L V G GSP +GA + + V+RR R
Sbjct: 2831 IELGVTGGGSPENGDGALLAITPPAVKRRRGR 2862
Score = 28.5 bits (62), Expect = 6.9
Identities = 32/111 (28%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 69 NNTPVSVLGRTSHYLRPQKCKHPPVFQCAVNPGIRAVPAMDTALLPPLVFFASLSP---A 125
N+TPV +T P +C P R PA A +P LV +P +
Sbjct: 2410 NHTPVISAHQTRSTTTPPRCSPARERVPRPAPRPRPTPASAPAAIPALVPVPVSAPVPIS 2469
Query: 126 AGIRLGCSPSHLLGRDHLSRPRPRPTRGDPPPSPDTGFSARACERVPARRP 176
A + P H+L P P PPPS S+ AC PA P
Sbjct: 2470 APNPITILPVHIL---------PSP----PPPSQIPPCSSPACTPPPACTP 2507
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 32.3 bits (72), Expect = 0.48
Identities = 47/172 (27%), Positives = 61/172 (35%), Gaps = 33/172 (19%)
Query: 126 AGIRLGCSPSHLLGRDHLSRPRPRPTRGDPPPSPDTGFSARACERVPARRPARRRERALC 185
AG L SP H + + PRP P SPD G + R + + RRR R
Sbjct: 212 AGPFLTPSPLHAV-----AMRSPRPCGRPPTDSPDAGGAGRPLDGYISALLRRRRRRG-A 265
Query: 186 GRCCSVVVAVRRRRRRRSSSRTRLPS-----------------------SSGAALRRPWQ 222
G+ + RR++S R R P +S AAL R W
Sbjct: 266 GQPRTSPGGADGGPRRQNSVRQRPPDASPSPGSARPAREPSLERVGGHPTSPAALSRAWA 325
Query: 223 GAW--EVSVRPSLP--AVSVRVHRCRRLEVGGHGSPGANGADMGLVERRSDR 270
+W E + P+ P A S V PGA A GL R + R
Sbjct: 326 SSWESEAAPEPAAPPAAPSPPDSPAEGRLVKAQYIPGAQAATRGLPGRAARR 377
>gi|239757158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 32.0 bits (71), Expect = 0.62
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 155 PPPSPDTGFSARACERVPARRPARRRERALCGRCCSVVVAVRRRRRRRSSSRTRLPSSSG 214
PPP P SAR+ R AR R R G C+ + + R R S R P S
Sbjct: 64 PPPRPSPALSARSSRRALARTALPGRGRGAPG--CAALPSRLPSPRPRPSRRAPPPVSRR 121
Query: 215 AALRRPWQGAWEVSVRPSLPAVSVRVHRCRRLEVGGHGSP 254
A R W+ + RP PA RR +GG SP
Sbjct: 122 TA--RGWEPGPTLG-RPRGPA--------RRPPLGGRVSP 150
Score = 28.1 bits (61), Expect = 9.0
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 10/42 (23%)
Query: 143 LSRPRPRPTRGDPPPSPDTGFSARACE--------RVPARRP 176
L PRPRP+R PPP + +AR E R PARRP
Sbjct: 103 LPSPRPRPSRRAPPPV--SRRTARGWEPGPTLGRPRGPARRP 142
>gi|169167813 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 32.0 bits (71), Expect = 0.62
Identities = 34/112 (30%), Positives = 42/112 (37%), Gaps = 36/112 (32%)
Query: 150 PTRGDPPPSPDTGFSARACERVPARRPARRRERALCGRCCSVVVAVRRRRRRRSSSRTRL 209
P+ G PPP P +RRR R RCC R RRRRRS
Sbjct: 105 PSPGSPPP--------------PGLSSSRRRHRHCSSRCC------RCRRRRRSL----- 139
Query: 210 PSSSGAALRRPW-QGAWEVSVRPSLPAVSVRVHRCRR-----LEVGGHGSPG 255
A L PW + AW+++ + R R + GGH SPG
Sbjct: 140 -----ALLLFPWLRPAWQLAGCQAWGGERGRGETGREDGRAGVGKGGHRSPG 186
>gi|239751647 PREDICTED: hypothetical protein XP_002347957 [Homo
sapiens]
Length = 150
Score = 32.0 bits (71), Expect = 0.62
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 155 PPPSPDTGFSARACERVPARRPARRRERALCGRCCSVVVAVRRRRRRRSSSRTRLPSSSG 214
PPP P SAR+ R AR R R G C+ + + R R S R P S
Sbjct: 64 PPPRPSPALSARSSRRALARTALPGRGRGAPG--CAALPSRLPSPRPRPSRRAPPPVSRR 121
Query: 215 AALRRPWQGAWEVSVRPSLPAVSVRVHRCRRLEVGGHGSP 254
A R W+ + RP PA RR +GG SP
Sbjct: 122 TA--RGWEPGPTLG-RPRGPA--------RRPPLGGRVSP 150
Score = 28.1 bits (61), Expect = 9.0
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 10/42 (23%)
Query: 143 LSRPRPRPTRGDPPPSPDTGFSARACE--------RVPARRP 176
L PRPRP+R PPP + +AR E R PARRP
Sbjct: 103 LPSPRPRPSRRAPPPV--SRRTARGWEPGPTLGRPRGPARRP 142
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,524,768
Number of Sequences: 37866
Number of extensions: 753412
Number of successful extensions: 3447
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 142
Number of HSP's that attempted gapping in prelim test: 3330
Number of HSP's gapped (non-prelim): 234
length of query: 281
length of database: 18,247,518
effective HSP length: 101
effective length of query: 180
effective length of database: 14,423,052
effective search space: 2596149360
effective search space used: 2596149360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.