Guide to the Human Genome
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Name: GZF1 Sequence: fasta or formatted (711aa) NCBI GI: 11968150
Description:

GDNF-inducible zinc finger protein 1

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         39           2
 C cysteine            4.1         29           2
 D aspartate           4.9         35           2
 E glutamate           9.4         67           9
 F phenylalanine       4.4         31           2
 G glycine             5.9         42           3
 H histidine           4.9         35           2
 I isoleucine          1.5         11           1
 K lysine              8.9         63           3
 L leucine             7.7         55           2
 M methionine          2.0         14           1
 N asparagine          3.0         21           1
 P proline             4.1         29           2
 Q glutamine           4.6         33           2
 R arginine            6.2         44           2
 S serine              8.3         59           2
 T threonine           6.0         43           2
 V valine              6.3         45           2
 W tryptophan          0.1          1           1
 Y tyrosine            2.1         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GDNF-inducible zinc finger protein 1 
ZNF658                0.181   zinc finger protein 658 
ZNF585A               0.181   zinc finger protein 585A 
ZNF585A               0.181   zinc finger protein 585A 
ZNF135                0.180   zinc finger protein 135 
ZNF678                0.179   zinc finger protein 678 
ZNF568                0.179   zinc finger protein 568 
ZNF585B               0.179   zinc finger protein 585B 
ZNF569                0.178   zinc finger protein 569 
ZNF253                0.178   zinc finger protein 253 
ZNF225                0.178   zinc finger protein 225 
ZNF16                 0.177   zinc finger protein 16 
ZNF16                 0.177   zinc finger protein 16 
LOC646864             0.177   PREDICTED: similar to hCG36734 
LOC646864             0.177   PREDICTED: similar to hCG36734 
LOC646864             0.177   PREDICTED: similar to hCG36734 
ZNF211                0.177   zinc finger protein 211 isoform 2 
ZNF211                0.177   zinc finger protein 211 isoform 1 
ZNF782                0.177   zinc finger protein 782 
ZNF551                0.177   zinc finger protein 551 
ZNF45                 0.176   zinc finger protein 45 
ZNF93                 0.176   zinc finger protein 93 
ZFP112                0.176   zinc finger protein 228 isoform 1 
ZFP112                0.176   zinc finger protein 228 isoform 2 
LOC647678             0.176   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC647678             0.176   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC100287477          0.176   PREDICTED: hypothetical protein XP_002343697 
ZNF665                0.175   zinc finger protein 665 
ZNF234                0.175   zinc finger protein 234 
ZNF234                0.175   zinc finger protein 234 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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